OpenMS: Member List

| OpenMS 2.5.0

ConsensusXMLFile Member List

This is the complete list of members for ConsensusXMLFile, including all inherited members.

accession_to_id_ | ConsensusXMLFile | protected
act_cons_element_ | ConsensusXMLFile | protected
ActionMode enum name | XMLHandler |
asBool_(const String &in) | XMLHandler | inlineprotected
asDateTime_(String date_string) | XMLHandler | inlineprotected
asDouble_(const String &in) | XMLHandler | inlineprotected
asFloat_(const String &in) | XMLHandler | inlineprotected
asInt_(const String &in) | XMLHandler | inlineprotected
asInt_(const XMLCh *in) | XMLHandler | inlineprotected
asUInt_(const String &in) | XMLHandler | inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) override | ConsensusXMLFile | protected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler |
CMD enum value | ProgressLogger |
consensus_map_ | ConsensusXMLFile | protected
ConsensusXMLFile() | ConsensusXMLFile |
current_logger_ | ProgressLogger | mutableprotected
cv_terms_ | XMLHandler | protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | ConsensusXMLFile | protected
endProgress() const | ProgressLogger |
enforced_encoding_ | XMLFile | protected
enforceEncoding_(const String &encoding) | XMLFile | protected
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected
error(const xercesc::SAXParseException &exception) override | XMLHandler |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
error_message_ | XMLHandler | mutableprotected
errorString() | XMLHandler |
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
file_ | XMLHandler | protected
getLoadDetail() const | XMLHandler | virtual
getLogType() const | ProgressLogger |
getOptions() | ConsensusXMLFile |
getOptions() const | ConsensusXMLFile |
getVersion() const | XMLFile |
GUI enum value | ProgressLogger |
id_identifier_ | ConsensusXMLFile | protected
identifier_id_ | ConsensusXMLFile | protected
isValid(const String &filename, std::ostream &os) | XMLFile |
it_ | ConsensusXMLFile | protected
last_invoke_ | ProgressLogger | mutableprotected
last_meta_ | ConsensusXMLFile | protected
LD_ALLDATA enum value | XMLHandler |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler |
LD_RAWCOUNTS enum value | XMLHandler |
load(const String &filename, ConsensusMap &map) | ConsensusXMLFile |
LOAD enum value | XMLHandler |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler |
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
open_tags_ | XMLHandler | protected
operator=(const ProgressLogger &other) | ProgressLogger |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
options_ | ConsensusXMLFile | protected
parse_(const String &filename, XMLHandler *handler) | XMLFile | protected
parseBuffer_(const std::string &buffer, XMLHandler *handler) | XMLFile | protected
pep_hit_ | ConsensusXMLFile | protected
pep_id_ | ConsensusXMLFile | protected
peptide_evidences_ | ConsensusXMLFile | protected
pos_ | ConsensusXMLFile | protected
progress_ | ConsensusXMLFile | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
prot_hit_ | ConsensusXMLFile | protected
prot_id_ | ConsensusXMLFile | protected
proteinid_to_accession_ | ConsensusXMLFile | protected
recursion_depth_ | ProgressLogger | protectedstatic
reset() | XMLHandler |
save_(const String &filename, XMLHandler *handler) const | XMLFile | protected
schema_location_ | XMLFile | protected
schema_version_ | XMLFile | protected
search_param_ | ConsensusXMLFile | protected
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual
setLogType(LogType type) const | ProgressLogger |
setProgress(SignedSize value) const | ProgressLogger |
sm_ | XMLHandler | protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | ConsensusXMLFile | protected
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
store(const String &filename, const ConsensusMap &consensus_map) | ConsensusXMLFile |
STORE enum value | XMLHandler |
type_ | ProgressLogger | mutableprotected
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level) | ConsensusXMLFile | protected
writeTo(std::ostream &) | XMLHandler | virtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic
XMLFile() | XMLFile |
XMLFile(const String &schema_location, const String &version) | XMLFile |
XMLHandler(const String &filename, const String &version) | XMLHandler |
~ConsensusXMLFile() override | ConsensusXMLFile |
~ProgressLogger() | ProgressLogger |
~XMLFile() | XMLFile | virtual
~XMLHandler() override | XMLHandler |