OpenMS: AbsoluteQuantitationMethodFile.h Source File

| OpenMS 2.5.0

AbsoluteQuantitationMethodFile.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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31 // $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $
32 // $Authors: Douglas McCloskey, Pasquale Domenico Colaianni $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37
38 #include <OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.h>
39 #include <OpenMS/CONCEPT/LogStream.h>
40 #include <OpenMS/FORMAT/CsvFile.h>
41 #include <map>
42 #include <fstream>
43 #include <boost/regex.hpp>
44
45 namespace OpenMS
46 {
54 class OPENMS_DLLAPI AbsoluteQuantitationMethodFile :
55 private CsvFile
56 {
57 public:
59 AbsoluteQuantitationMethodFile() = default;
61 ~AbsoluteQuantitationMethodFile() = default;
62
72 void load(const String & filename, std::vector<AbsoluteQuantitationMethod> & aqm_list);
73
82 void store(const String & filename, const std::vector<AbsoluteQuantitationMethod> & aqm_list);
83
84 protected:
92 void parseLine_(
93 const StringList & line,
94 const std::map<String, Size> & headers,
95 AbsoluteQuantitationMethod & aqm
96 ) const;
97
106 void setCastValue_(const String& key, const String& value, Param& params) const;
107
108 };
109
110 } // namespace OpenMS
111
OpenMS::AbsoluteQuantitationMethodFile
File adapter for AbsoluteQuantitationMethod files.
Definition: AbsoluteQuantitationMethodFile.h:54
CsvFile.h
OpenMS::CsvFile
This class handles csv files. Currently only loading is implemented.
Definition: CsvFile.h:49
LogStream.h
OpenMS::Param
Management and storage of parameters / INI files.
Definition: Param.h:73
OpenMS::StringList
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
OpenMS::String
A more convenient string class.
Definition: String.h:58
AbsoluteQuantitationMethod.h
OpenMS::AbsoluteQuantitationMethod
AbsoluteQuantitationMethod is a class to hold information about the quantitation method and for apply...
Definition: AbsoluteQuantitationMethod.h:52
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46