| OpenMS 2.5.0

ConsensusIDAlgorithmIdentity.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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31 // $Maintainer: Hendrik Weisser $
32 // $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h>
38
39 namespace OpenMS
40 {
52 class OPENMS_DLLAPI ConsensusIDAlgorithmIdentity :
53 public ConsensusIDAlgorithm
54 {
55 protected:
57 ConsensusIDAlgorithmIdentity();
58
68 virtual void preprocess_(std::vector<PeptideIdentification>& ids);
69
78 virtual double getAggregateScore_(std::vector<double>& scores,
79 bool higher_better) = 0;
80
81 private:
83 ConsensusIDAlgorithmIdentity(const ConsensusIDAlgorithmIdentity&);
84
86 ConsensusIDAlgorithmIdentity& operator=(const ConsensusIDAlgorithmIdentity&);
87
89 void apply_(std::vector<PeptideIdentification>& ids,
90 SequenceGrouping& results) override;
91 };
92
93 } // namespace OpenMS
94
ConsensusIDAlgorithm.h
OpenMS::ConsensusIDAlgorithm::SequenceGrouping
std::map< AASequence, std::pair< Int, std::vector< double > > > SequenceGrouping
Mapping: peptide sequence -> (charge, scores)
Definition: ConsensusIDAlgorithm.h:80
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::ConsensusIDAlgorithmIdentity
Abstract base class for ConsensusID algorithms that compare only identical sequences.
Definition: ConsensusIDAlgorithmIdentity.h:52
OpenMS::ConsensusIDAlgorithm
Abstract base class for all ConsensusID algorithms (that calculate a consensus from multiple ID runs)...
Definition: ConsensusIDAlgorithm.h:59