| OpenMS 2.5.0

QcMLFile Member List

This is the complete list of members for QcMLFile, including all inherited members.

ActionMode enum name | XMLHandler |
addRunAttachment(String r, Attachment at) | QcMLFile |
addRunQualityParameter(String r, QualityParameter qp) | QcMLFile |
addSetAttachment(String r, Attachment at) | QcMLFile |
addSetQualityParameter(String r, QualityParameter qp) | QcMLFile |
asBool_(const String &in) | XMLHandler | inline protected
asDateTime_(String date_string) | XMLHandler | inline protected
asDouble_(const String &in) | XMLHandler | inline protected
asFloat_(const String &in) | XMLHandler | inline protected
asInt_(const String &in) | XMLHandler | inline protected
asInt_(const XMLCh *in) | XMLHandler | inline protected
asUInt_(const String &in) | XMLHandler | inline protected
at_ | QcMLFile | protected
ats_ | QcMLFile | protected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
characters(const XMLCh *const chars, const XMLSize_t length) override | QcMLFile | protected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler |
CMD enum value | ProgressLogger |
collectSetParameter(const String setname, const String qp, std::vector< String > &ret) | QcMLFile |
current_logger_ | ProgressLogger | mutable protected
cv_terms_ | XMLHandler | protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inline protected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | QcMLFile | protected
endProgress() const | ProgressLogger |
enforced_encoding_ | XMLFile | protected
enforceEncoding_(const String &encoding) | XMLFile | protected
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inline protected
error(const xercesc::SAXParseException &exception) override | XMLHandler |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
error_message_ | XMLHandler | mutable protected
errorString() | XMLHandler |
existsRun(const String filename, bool checkname=false) const | QcMLFile |
existsRunQualityParameter(const String filename, const String qpname, std::vector< String > &ids) const | QcMLFile |
existsSet(const String filename, bool checkname=false) const | QcMLFile |
existsSetQualityParameter(const String filename, const String qpname, std::vector< String > &ids) const | QcMLFile |
exportAttachment(const String filename, const String qpname) const | QcMLFile |
exportIDstats(const String &filename) const | QcMLFile |
exportQP(const String filename, const String qpname) const | QcMLFile |
exportQPs(const String filename, const StringList qpnames) const | QcMLFile |
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
file_ | XMLHandler | protected
getLoadDetail() const | XMLHandler | virtual
getLogType() const | ProgressLogger |
getRunIDs(std::vector< String > &ids) const | QcMLFile |
getRunNames(std::vector< String > &ids) const | QcMLFile |
getVersion() const | XMLFile |
GUI enum value | ProgressLogger |
header_ | QcMLFile | protected
isValid(const String &filename, std::ostream &os) | XMLFile |
last_invoke_ | ProgressLogger | mutable protected
LD_ALLDATA enum value | XMLHandler |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler |
LD_RAWCOUNTS enum value | XMLHandler |
load(const String &filename) | QcMLFile |
LOAD enum value | XMLHandler |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler |
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
map2csv(const std::map< String, std::map< String, String > > &cvs_table, const String &separator) const | QcMLFile |
merge(const QcMLFile &addendum, String setname="") | QcMLFile |
name_ | QcMLFile | protected
names_ | QcMLFile | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
open_tags_ | XMLHandler | protected
operator=(const ProgressLogger &other) | ProgressLogger |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
parse_(const String &filename, XMLHandler *handler) | XMLFile | protected
parseBuffer_(const std::string &buffer, XMLHandler *handler) | XMLFile | protected
progress_ | QcMLFile | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
QcMLFile() | QcMLFile |
qp_ | QcMLFile | protected
qps_ | QcMLFile | protected
recursion_depth_ | ProgressLogger | protected static
registerRun(const String id, const String name) | QcMLFile |
registerSet(const String id, const String name, const std::set< String > &names) | QcMLFile |
removeAllAttachments(String at) | QcMLFile |
removeAttachment(String r, std::vector< String > &ids, String at="") | QcMLFile |
removeAttachment(String r, String at) | QcMLFile |
removeQualityParameter(String r, std::vector< String > &ids) | QcMLFile |
reset() | XMLHandler |
row_ | QcMLFile | protected
run_id_ | QcMLFile | protected
run_Name_ID_map_ | QcMLFile | protected
runQualityAts_ | QcMLFile | protected
runQualityQPs_ | QcMLFile | protected
save_(const String &filename, XMLHandler *handler) const | XMLFile | protected
schema_location_ | XMLFile | protected
schema_version_ | XMLFile | protected
set_Name_ID_map_ | QcMLFile | protected
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual
setLogType(LogType type) const | ProgressLogger |
setProgress(SignedSize value) const | ProgressLogger |
setQualityAts_ | QcMLFile | protected
setQualityQPs_ | QcMLFile | protected
setQualityQPs_members_ | QcMLFile | protected
sm_ | XMLHandler | protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | QcMLFile | protected
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
STORE enum value | XMLHandler |
store(const String &filename) const | QcMLFile |
tag_ | QcMLFile | protected
type_ | ProgressLogger | mutable protected
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
writeTo(std::ostream &) | XMLHandler | virtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inline static
XMLFile() | XMLFile |
XMLFile(const String &schema_location, const String &version) | XMLFile |
XMLHandler(const String &filename, const String &version) | XMLHandler |
~ProgressLogger() | ProgressLogger |
~QcMLFile() override | QcMLFile |
~XMLFile() | XMLFile | virtual
~XMLHandler() override | XMLHandler |