| OpenMS 2.5.0

DataFrameWriter.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Witold Wolski $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <fstream>
38 #include <string>
39 #include <vector>
40
41 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
42
43 namespace OpenSwath
44 {
45 struct OPENSWATHALGO_DLLAPI IDataFrameWriter
46 {
47 virtual ~IDataFrameWriter();
48 virtual void colnames(const std::vector<std::string>& colnames) = 0;
49 virtual void store(const std::string& rowname,
50 const std::vector<double>& values) = 0;
51 };
52
53 struct OPENSWATHALGO_DLLAPI DataMatrix :
54 IDataFrameWriter
55 {
56 private:
57 std::vector<std::string> colnames_;
58 std::vector<std::string> rownames_;
59 std::vector<std::vector<double> > store_;
60
61 public:
62 DataMatrix();
63
64 void store(const std::string& rowname,
65 const std::vector<double>& values) override;
66
67 void colnames(const std::vector<std::string>& colnames) override;
68
69 };
70
71 struct OPENSWATHALGO_DLLAPI CSVWriter :
72 IDataFrameWriter
73 {
74 private:
75 std::ofstream file_stream_;
76 std::string sep_;
77 std::string eol_;
78
79 public:
80 explicit CSVWriter(std::string filename);
81
82 void store(const std::string& rowname,
83 const std::vector<double>& values) override;
84
85 ~CSVWriter() override;
86
87 void colnames(const std::vector<std::string>& colnames) override;
88
89 };
90 }
91
OpenSwath::DataMatrix::rownames_
std::vector< std::string > rownames_
Definition: DataFrameWriter.h:58
OpenSwath
Definition: MRMScoring.h:49
OpenSwath::CSVWriter::file_stream_
std::ofstream file_stream_
Definition: DataFrameWriter.h:75
OpenSwath::DataMatrix::store_
std::vector< std::vector< double > > store_
Definition: DataFrameWriter.h:59
OpenSwath::CSVWriter
Definition: DataFrameWriter.h:71
OpenSwath::CSVWriter::eol_
std::string eol_
Definition: DataFrameWriter.h:77
OpenSwath::DataMatrix::colnames_
std::vector< std::string > colnames_
Definition: DataFrameWriter.h:57
OpenSwath::IDataFrameWriter
Definition: DataFrameWriter.h:45
OpenSwath::CSVWriter::sep_
std::string sep_
Definition: DataFrameWriter.h:76
OpenSwath::DataMatrix
Definition: DataFrameWriter.h:53