| OpenMS 2.5.0

DIAScoring Member List

This is the complete list of members for DIAScoring, including all inherited members.

check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
dia_by_ion_score(SpectrumPtrType spectrum, AASequence &sequence, int charge, double &bseries_score, double &yseries_score) | DIAScoring |
dia_byseries_intensity_min_ | DIAScoring | private
dia_byseries_ppm_diff_ | DIAScoring | private
dia_centroided_ | DIAScoring | private
dia_extract_window_ | DIAScoring | private
dia_extraction_ppm_ | DIAScoring | private
dia_isotope_scores(const std::vector< TransitionType > &transitions, SpectrumPtrType spectrum, OpenSwath::IMRMFeature *mrmfeature, double &isotope_corr, double &isotope_overlap) | DIAScoring |
dia_massdiff_score(const std::vector< TransitionType > &transitions, SpectrumPtrType spectrum, const std::vector< double > &normalized_library_intensity, double &ppm_score, double &ppm_score_weighted, std::vector< double > &diff_ppm) | DIAScoring |
dia_ms1_isotope_scores(double precursor_mz, SpectrumPtrType spectrum, size_t charge_state, double &isotope_corr, double &isotope_overlap, const std::string &sum_formula="") | DIAScoring |
dia_ms1_massdiff_score(double precursor_mz, SpectrumPtrType spectrum, double &ppm_score) | DIAScoring |
dia_nr_charges_ | DIAScoring | private
dia_nr_isotopes_ | DIAScoring | private
diaIsotopeScoresSub_(const std::vector< TransitionType > &transitions, SpectrumPtrType spectrum, std::map< std::string, double > &intensities, double &isotope_corr, double &isotope_overlap) | DIAScoring | private
DIAScoring() | DIAScoring |
DIAScoring(const DIAScoring &rhs) | DIAScoring | private
error_name_ | DefaultParamHandler | protected
generator | DIAScoring | private
getDefaults() const | DefaultParamHandler |
getFirstIsotopeRelativeIntensities_(const std::vector< TransitionType > &transitions, OpenSwath::IMRMFeature *mrmfeature, std::map< std::string, double > &intensities) | DIAScoring | private
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
largePeaksBeforeFirstIsotope_(SpectrumPtrType spectrum, double mono_mz, double mono_int, int &nr_occurrences, double &max_ratio) | DIAScoring | private
operator=(const DIAScoring &rhs) | DIAScoring | private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
peak_before_mono_max_ppm_diff_ | DIAScoring | private
score_with_isotopes(SpectrumPtrType spectrum, const std::vector< TransitionType > &transitions, double &dotprod, double &manhattan) | DIAScoring |
scoreIsotopePattern_(double product_mz, const std::vector< double > &isotopes_int, int putative_fragment_charge, const std::string &sum_formula="") | DIAScoring | private
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
SpectrumPtrType typedef | DIAScoring | private
subsections_ | DefaultParamHandler | protected
TransitionType typedef | DIAScoring | private
updateMembers_() override | DIAScoring | private virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~DIAScoring() override | DIAScoring |