| OpenMS 2.5.0

IDSplitter

Splits protein/peptide identifications off of annotated data files.

This performs the reverse operation as IDMapper.

Note
  Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

    IDSplitter -- Splits protein/peptide identifications off of annotated data files

    Full documentation: http://www.openms.de/documentation/UTILS_IDSplitter.html

    Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

    To cite OpenMS:

      Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

    Usage:

      IDSplitter <options>

    Options (mandatory options marked with '*'):

      -in <file>*        Input file (data annotated with identifications) (valid formats: 'mzML', 'featureXML',

                         'consensusXML')

      -out <file>        Output file (data without identifications). Either 'out' or 'id_out' are required. They

                         can be used together. (valid formats: 'mzML', 'featureXML', 'consensusXML')

      -id_out <file>     Output file (identifications). Either 'out' or 'id_out' are required. They can be used

                         together. (valid formats: 'idXML')

    Common UTIL options:

      -ini <file>        Use the given TOPP INI file

      -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')

      -write_ini <file>  Writes the default configuration file

      --help             Shows options

      --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+IDSplitter Splits protein/peptide identifications off of annotated data files
version 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1 Instance '1' section for 'IDSplitter'
in Input file (data annotated with identifications)input file*.mzML,*.featureXML,*.consensusXML
out Output file (data without identifications). Either 'out' or 'id_out' are required. They can be used together.output file*.mzML,*.featureXML,*.consensusXML
id_out Output file (identifications). Either 'out' or 'id_out' are required. They can be used together.output file*.idXML
log Name of log file (created only when specified)
debug 0 Sets the debug level
threads 1 Sets the number of threads allowed to be used by the TOPP tool
no_progress false Disables progress logging to command line true,false
force false Overwrite tool specific checks.true,false
test false Enables the test mode (needed for internal use only)true,false