| OpenMS 2.5.0

MapAlignmentAlgorithmIdentification Member List

This is the complete list of members for MapAlignmentAlgorithmIdentification, including all inherited members.

align(std::vector< DataType > &data, std::vector< TransformationDescription > &transformations, Int reference_index=-1) | MapAlignmentAlgorithmIdentification | inline
better_ | MapAlignmentAlgorithmIdentification | protected
check_defaults_ | DefaultParamHandler | protected
checkParameters_(const Size runs) | MapAlignmentAlgorithmIdentification | protected
CMD enum value | ProgressLogger |
computeMedians_(SeqToList &rt_data, SeqToValue &medians, bool sorted=false) | MapAlignmentAlgorithmIdentification | protected
computeTransformations_(std::vector< SeqToList > &rt_data, std::vector< TransformationDescription > &transforms, bool sorted=false) | MapAlignmentAlgorithmIdentification | protected
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getReference_() | MapAlignmentAlgorithmIdentification | protected
getRetentionTimes_(std::vector< PeptideIdentification > &peptides, SeqToList &rt_data) | MapAlignmentAlgorithmIdentification | protected
getRetentionTimes_(PeakMap &experiment, SeqToList &rt_data) | MapAlignmentAlgorithmIdentification | protected
getRetentionTimes_(MapType &features, SeqToList &rt_data) | MapAlignmentAlgorithmIdentification | inline protected
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
MapAlignmentAlgorithmIdentification() | MapAlignmentAlgorithmIdentification |
MapAlignmentAlgorithmIdentification(const MapAlignmentAlgorithmIdentification &) | MapAlignmentAlgorithmIdentification | private
min_run_occur_ | MapAlignmentAlgorithmIdentification | protected
min_score_ | MapAlignmentAlgorithmIdentification | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const MapAlignmentAlgorithmIdentification &) | MapAlignmentAlgorithmIdentification | private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
reference_ | MapAlignmentAlgorithmIdentification | protected
reference_index_ | MapAlignmentAlgorithmIdentification | protected
score_cutoff_ | MapAlignmentAlgorithmIdentification | protected
SeqToList typedef | MapAlignmentAlgorithmIdentification | protected
SeqToValue typedef | MapAlignmentAlgorithmIdentification | protected
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
setReference(DataType &data) | MapAlignmentAlgorithmIdentification | inline
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutable protected
updateMembers_() | DefaultParamHandler | protected virtual
use_feature_rt_ | MapAlignmentAlgorithmIdentification | protected
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~MapAlignmentAlgorithmIdentification() override | MapAlignmentAlgorithmIdentification |
~ProgressLogger() | ProgressLogger |