| OpenMS 2.5.0

IDFilter

Filters peptide/protein identification results by different criteria.

potential predecessor tools | IDFilter | potential successor tools
MascotAdapterOnline (or other ID engines) | PeptideIndexer
IDFileConverter | ProteinInference
FalseDiscoveryRate | IDMapper
ConsensusID | ProteinQuantifier (for spectral counting)

This tool is used to filter the identifications found by a peptide/protein identification engine like Mascot. Different filters can be applied. To enable any of them, just change their default value. All active filters are applied in order.

Most filtering options should be straight-forward - see the documentation of the different parameters. For some filters that warrent further discussion, see below.

Score filters (`score:pep`, `score:prot`):

Peptide or protein hits with scores at least as good as the given cut-off are retained by the filter; hits with worse scores are removed. Whether scores should be higher or lower than the cut-off depends on the type/orientation of the score.

The score that was most recently set by a processing step is considered for filtering. For example, it could be a Mascot score (if MascotAdapterOnline was applied) or an FDR (if FalseDiscoveryRate was applied), etc. IDScoreSwitcher is useful to switch to a particular score before filtering.

Protein accession filters (`whitelist:proteins`, `whitelist:protein_accessions`, `blacklist:proteins`, `blacklist:protein_accessions`):

These filters retain only peptide and protein hits that do (whitelist) or do not (blacklist) match any of the proteins from a given set. This set of proteins can be given through a FASTA file (`...:proteins`) or as a list of accessions (`...:protein_accessions`).

Note that even in the case of a FASTA file, matching is only done by protein accession, not by sequence. If necessary, use PeptideIndexer to generate protein references for peptide hits via sequence look-up.

Note
  Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

    IDFilter -- Filters results from protein or peptide identification engines based on different criteria.

    Full documentation: http://www.openms.de/documentation/TOPP_IDFilter.html

    Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

    To cite OpenMS:

      Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

    Usage:

      IDFilter <options>

    Options (mandatory options marked with '*'):

      -in <file>*                                               Input file  (valid formats: 'idXML')

      -out <file>*                                              Output file  (valid formats: 'idXML')

    Filtering by precursor attributes (RT, m/z, charge, length):

      -precursor:rt [min]:[max]                                 Retention time range to extract. (default: ':')

      -precursor:mz [min]:[max]                                 Mass-to-charge range to extract. (default: ':')

      -precursor:length [min]:[max]                             Keep only peptide hits with a sequence length in

                                                                this range. (default: ':')

      -precursor:charge [min]:[max]                             Keep only peptide hits with charge states in this

                                                                range. (default: ':')

    Filtering by peptide/protein score.:

      -score:pep <score>                                        The score which should be reached by a peptide

                                                                hit to be kept. (default: '0.0')

      -score:prot <score>                                       The score which should be reached by a protein

                                                                hit to be kept. Use in combination with 'delete_u

                                                                nreferenced_peptide_hits' to remove affected pept

                                                                ides. (default: '0.0')

    Filtering by whitelisting (only peptides/proteins from a given set can pass):

      -whitelist:proteins <file>                                Filename of a FASTA file containing protein seque

                                                                nces.

                                                                All peptides that are not referencing a protein

                                                                in this file are removed.

                                                                All proteins whose accessions are not present in

                                                                this file are removed. (valid formats: 'fasta')

      -whitelist:protein_accessions <accessions>                All peptides that do not reference at least one

                                                                of the provided protein accession are removed.

                                                                Only proteins of the provided list are retained.

      -whitelist:peptides <file>                                Only peptides with the same sequence and modifica

                                                                tion assignment as any peptide in this file are

                                                                kept. Use with 'whitelist:ignore_modifications'

                                                                to only compare by sequence.

                                                                (valid formats: 'idXML')

    Filtering by blacklisting (only peptides/proteins NOT present in a given set can pass):

      -blacklist:proteins <file>                                Filename of a FASTA file containing protein seque

                                                                nces.

                                                                All peptides that are referencing a protein in t

                                                                his file are removed.

                                                                All proteins whose accessions are present in thi

                                                                s file are removed. (valid formats: 'fasta')

      -blacklist:protein_accessions <accessions>                All peptides that reference at least one of the

                                                                provided protein accession are removed.

                                                                Only proteins not in the provided list are retai

                                                                ned.

      -blacklist:peptides <file>                                Peptides with the same sequence and modification

                                                                assignment as any peptide in this file are filter

                                                                ed out. Use with 'blacklist:ignore_modifications'

                                                                to only compare by sequence.

                                                                (valid formats: 'idXML')

    This filter option removes peptide hits which are not in the list of in silico peptides generated by the rule

    s specified below:

      -in_silico_digestion:fasta <file>                         Fasta protein sequence database. (valid formats:

                                                                'fasta')

    This filter option removes peptide hits which do not confirm with the allowed missed cleavages specified belo

    w.:

      -missed_cleavages:number_of_missed_cleavages [min]:[max]  Range of allowed missed cleavages in the peptide

                                                                sequences.

                                                                For example: 0:1 -> peptides with two or more mi

                                                                ssed cleavages will be removed,

                                                                0:0 -> peptides with any missed cleavages will b

                                                                e removed (default: ':')

    Filtering best hits per spectrum (for peptides) or from proteins:

      -best:n_peptide_hits <integer>                            Keep only the 'n' highest scoring peptide hits

                                                                per spectrum (for n > 0). (default: '0' min: '0')

      -best:n_protein_hits <integer>                            Keep only the 'n' highest scoring protein hits

                                                                (for n > 0). (default: '0' min: '0')

      -best:strict                                              Keep only the highest scoring peptide hit.

                                                                Similar to n_peptide_hits=1, but if there are ti

                                                                es between two or more highest scoring hits, none

                                                                are kept.

      -var_mods                                                 Keep only peptide hits with variable modification

                                                                s (as defined in the 'SearchParameters' section

                                                                of the input file).

      -remove_shared_peptides                                   Only peptides matching exactly one protein are

                                                                kept. Remember that isoforms count as different

                                                                proteins!

      -keep_unreferenced_protein_hits                           Proteins not referenced by a peptide are retained

                                                                in the IDs.

      -remove_decoys                                            Remove proteins according to the information in

                                                                the user parameters. Usually used in combination

                                                                with 'delete_unreferenced_peptide_hits'.

      -delete_unreferenced_peptide_hits                         Peptides not referenced by any protein are delete

                                                                d in the IDs. Usually used in combination with

                                                                'score:prot' or 'thresh:prot'.

    Common TOPP options:

      -ini <file>                                               Use the given TOPP INI file

      -threads <n>                                              Sets the number of threads allowed to be used by

                                                                the TOPP tool (default: '1')

      -write_ini <file>                                         Writes the default configuration file

      --help                                                    Shows options

      --helphelp                                                Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+IDFilter Filters results from protein or peptide identification engines based on different criteria.
version 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1 Instance '1' section for 'IDFilter'
in input file input file*.idXML
out output file output file*.idXML
var_mods false Keep only peptide hits with variable modifications (as defined in the 'SearchParameters' section of the input file).true,false
remove_duplicate_psm false Removes duplicated PSMs per spectrum and retains the one with the higher score.true,false
remove_shared_peptides false Only peptides matching exactly one protein are kept. Remember that isoforms count as different proteins!true,false
keep_unreferenced_protein_hits false Proteins not referenced by a peptide are retained in the IDs.true,false
remove_decoys false Remove proteins according to the information in the user parameters. Usually used in combination with 'delete_unreferenced_peptide_hits'.true,false
delete_unreferenced_peptide_hits false Peptides not referenced by any protein are deleted in the IDs. Usually used in combination with 'score:prot' or 'thresh:prot'.true,false
remove_peptide_hits_by_metavalue[] Expects a 3-tuple (=3 entries in the list), i.e. 'lt|eq|gt|ne' ; the first is the name of meta value, followed by the comparison operator (equal, less, greater, not equal) and the value to compare to. All comparisons are done after converting the given value to the corresponding data value type of the meta value (for lists, this simply compares length, not content!)!
log Name of log file (created only when specified)
debug 0 Sets the debug level
threads 1 Sets the number of threads allowed to be used by the TOPP tool
no_progress false Disables progress logging to command line true,false
force false Overwrite tool specific checks.true,false
test false Enables the test mode (needed for internal use only)true,false
+++precursor Filtering by precursor attributes (RT, m/z, charge, length)
rt: Retention time range to extract.
mz: Mass-to-charge range to extract.
length: Keep only peptide hits with a sequence length in this range.
charge: Keep only peptide hits with charge states in this range.
+++score Filtering by peptide/protein score.
pep 0.0 The score which should be reached by a peptide hit to be kept.
prot 0.0 The score which should be reached by a protein hit to be kept. Use in combination with 'delete_unreferenced_peptide_hits' to remove affected peptides.
+++whitelist Filtering by whitelisting (only peptides/proteins from a given set can pass)
proteins Filename of a FASTA file containing protein sequences.
All peptides that are not referencing a protein in this file are removed.
All proteins whose accessions are not present in this file are removed.input file*.fasta
protein_accessions[] All peptides that do not reference at least one of the provided protein accession are removed.
Only proteins of the provided list are retained.
peptides Only peptides with the same sequence and modification assignment as any peptide in this file are kept. Use with 'whitelist:ignore_modifications' to only compare by sequence.
input file*.idXML
ignore_modifications false Compare whitelisted peptides by sequence only.true,false
modifications[] Keep only peptides with sequences that contain (any of) the selected modification(s)15N-oxobutanoic (N-term C),15N-oxobutanoic (Protein N-term S),15N-oxobutanoic (Protein N-term T),2-dimethylsuccinyl (C),2-monomethylsuccinyl (C),2-nitrobenzyl (Y),2-succinyl (C),2HPG (R),3-deoxyglucosone (R),3-phosphoglyceryl (K),3sulfo (N-term),4-ONE (C),4-ONE (H),4-ONE (K),4-ONE+Delta:H(-2)O(-1) (C),4-ONE+Delta:H(-2)O(-1) (H),4-ONE+Delta:H(-2)O(-1) (K),4AcAllylGal (C),a-type-ion (C-term),AccQTag (K),AccQTag (N-term),Acetyl (C),Acetyl (H),Acetyl (K),Acetyl (N-term),Acetyl (Protein N-term),Acetyl (S),Acetyl (T),Acetyl (Y),Acetyl:13C(2) (K),Acetyl:13C(2) (Protein N-term),Acetyl:2H(3) (H),Acetyl:2H(3) (K),Acetyl:2H(3) (N-term),Acetyl:2H(3) (Protein N-term),Acetyl:2H(3) (S),Acetyl:2H(3) (T),Acetyl:2H(3) (Y),Acetyldeoxyhypusine (K),Acetylhypusine (K),ADP-Ribosyl (C),ADP-Ribosyl (D),ADP-Ribosyl (E),ADP-Ribosyl (K),ADP-Ribosyl (N),ADP-Ribosyl (R),ADP-Ribosyl (S),ADP-Ribosyl (T),AEBS (H),AEBS (K),AEBS (Protein N-term),AEBS (S),AEBS (Y),AEC-MAEC (S),AEC-MAEC (T),AEC-MAEC:2H(4) (S),AEC-MAEC:2H(4) (T),AHA-Alkyne (M),AHA-Alkyne-KDDDD (M),AHA-SS (M),AHA-SS_CAM (M),Ahx2+Hsl (C-term),Ala->Arg (A),Ala->Asn (A),Ala->Asp (A),Ala->Cys (A),Ala->Gln (A),Ala->Glu (A),Ala->Gly (A),Ala->His (A),Ala->Lys (A),Ala->Met (A),Ala->Phe (A),Ala->Pro (A),Ala->Ser (A),Ala->Thr (A),Ala->Trp (A),Ala->Tyr (A),Ala->Val (A),Ala->Xle (A),Amidated (C-term),Amidated (Protein C-term),Amidine (K),Amidine (N-term),Amidino (C),Amino (Y),Ammonia-loss (N),Ammonia-loss (N-term C),Ammonia-loss (Protein N-term S),Ammonia-loss (Protein N-term T),Ammonium (C-term),Ammonium (D),Ammonium (E),AMTzHexNAc2 (N),AMTzHexNAc2 (S),AMTzHexNAc2 (T),Archaeol (C),Arg (N-term),Arg->Ala (R),Arg->Asn (R),Arg->Asp (R),Arg->Cys (R),Arg->Gln (R),Arg->Glu (R),Arg->GluSA (R),Arg->Gly (R),Arg->His (R),Arg->Lys (R),Arg->Met (R),Arg->Npo (R),Arg->Orn (R),Arg->Phe (R),Arg->Pro (R),Arg->Ser (R),Arg->Thr (R),Arg->Trp (R),Arg->Tyr (R),Arg->Val (R),Arg->Xle (R),Arg-loss (C-term R),Arg2PG (R),Argbiotinhydrazide (R),AROD (C),Asn->Ala (N),Asn->Arg (N),Asn->Asp (N),Asn->Cys (N),Asn->Gln (N),Asn->Glu (N),Asn->Gly (N),Asn->His (N),Asn->Lys (N),Asn->Met (N),Asn->Phe (N),Asn->Pro (N),Asn->Ser (N),Asn->Thr (N),Asn->Trp (N),Asn->Tyr (N),Asn->Val (N),Asn->Xle (N),Asp->Ala (D),Asp->Arg (D),Asp->Asn (D),Asp->Cys (D),Asp->Gln (D),Asp->Glu (D),Asp->Gly (D),Asp->His (D),Asp->Lys (D),Asp->Met (D),Asp->Phe (D),Asp->Pro (D),Asp->Ser (D),Asp->Thr (D),Asp->Trp (D),Asp->Tyr (D),Asp->Val (D),Asp->Xle (D),Atto495Maleimide (C),azole (C),azole (S),Bacillosamine (N),BADGE (C),BDMAPP (H),BDMAPP (K),BDMAPP (Protein N-term),BDMAPP (W),BDMAPP (Y),Benzoyl (K),Benzoyl (N-term),benzylguanidine (K),beta FNA (C),beta FNA (K),BHT (C),BHT (H),BHT (K),BHTOH (C),BHTOH (H),BHTOH (K),Biotin (K),Biotin (N-term),Biotin-HPDP (C),Biotin-PEG-PRA (M),Biotin-PEO-Amine (D),Biotin-PEO-Amine (E),Biotin-PEO-Amine (Protein C-term),Biotin-phenacyl (C),Biotin-phenacyl (H),Biotin-phenacyl (S),Biotin-tyramide (Y),Biotin:Cayman-10013 (C),Biotin:Cayman-10141 (C),Biotin:Invitrogen-M1602 (C),Biotin:Sigma-B1267 (C),Biotin:Thermo-21325 (K),Biotin:Thermo-21330 (K),Biotin:Thermo-21330 (N-term),Biotin:Thermo-21345 (Q),Biotin:Thermo-21360 (X),Biotin:Thermo-21901+2H2O (C),Biotin:Thermo-21901+H2O (C),Biotin:Thermo-21911 (C),Biotin:Thermo-33033 (X),Biotin:Thermo-33033-H (X),Biotin:Thermo-88310 (K),Biotin:Thermo-88317 (S),Biotin:Thermo-88317 (Y),biotinAcrolein298 (C),biotinAcrolein298 (H),biotinAcrolein298 (K),biotinAcrolein298 (Protein N-term),BisANS (K),bisANS-sulfonates (K),bisANS-sulfonates (S),bisANS-sulfonates (T),BITC (C),BITC (K),BITC (N-term),BMOE (C),BMP-piperidinol (C),BMP-piperidinol (M),Bodipy (C),Brij35 (N-term),Brij58 (N-term),Bromo (F),Bromo (H),Bromo (W),Bromo (Y),Bromobimane (C),Butyryl (K),C8-QAT (K),C8-QAT (N-term),CAF (N-term),CAMthiopropanoyl (K),CAMthiopropanoyl (Protein N-term),Can-FP-biotin (S),Can-FP-biotin (T),Can-FP-biotin (Y),Carbamidomethyl (C),Carbamidomethyl (D),Carbamidomethyl (E),Carbamidomethyl (H),Carbamidomethyl (K),Carbamidomethyl (N-term),Carbamidomethyl (S),Carbamidomethyl (T),Carbamidomethyl (U),Carbamidomethyl (Y),CarbamidomethylDTT (C),Carbamyl (C),Carbamyl (K),Carbamyl (M),Carbamyl (N-term),Carbamyl (Protein N-term),Carbamyl (R),Carbamyl (S),Carbamyl (T),Carbamyl (Y),Carbofuran (S),Carboxy (D),Carboxy (E),Carboxy (K),Carboxy (Protein N-term M),Carboxy (W),Carboxy->Thiocarboxy (Protein C-term G),Carboxyethyl (H),Carboxyethyl (K),Carboxyethylpyrrole (K),Carboxymethyl (C),Carboxymethyl (K),Carboxymethyl (N-term),Carboxymethyl (U),Carboxymethyl (W),Carboxymethyl:13C(2) (C),CarboxymethylDMAP (N-term),CarboxymethylDTT (C),Cation:Ag (C-term),Cation:Ag (D),Cation:Ag (E),Cation:Ca[II] (C-term),Cation:Ca[II] (D),Cation:Ca[II] (E),Cation:Cu[I] (C-term),Cation:Cu[I] (D),Cation:Cu[I] (E),Cation:Cu[I] (H),Cation:Fe[II] (C-term),Cation:Fe[II] (D),Cation:Fe[II] (E),Cation:K (C-term),Cation:K (D),Cation:K (E),Cation:Li (C-term),Cation:Li (D),Cation:Li (E),Cation:Mg[II] (C-term),Cation:Mg[II] (D),Cation:Mg[II] (E),Cation:Na (C-term),Cation:Na (D),Cation:Na (E),Cation:Ni[II] (C-term),Cation:Ni[II] (D),Cation:Ni[II] (E),Cation:Zn[II] (C-term),Cation:Zn[II] (D),Cation:Zn[II] (E),Cation:Zn[II] (H),cGMP (C),cGMP (S),cGMP+RMP-loss (C),cGMP+RMP-loss (S),CHDH (D),Chlorination (Y),Chlorpyrifos (S),Chlorpyrifos (T),Chlorpyrifos (Y),Cholesterol (Protein C-term),CLIP_TRAQ_2 (K),CLIP_TRAQ_2 (N-term),CLIP_TRAQ_2 (Y),CLIP_TRAQ_3 (K),CLIP_TRAQ_3 (N-term),CLIP_TRAQ_3 (Y),CLIP_TRAQ_4 (K),CLIP_TRAQ_4 (N-term),CLIP_TRAQ_4 (Y),CoenzymeA (C),Cresylphosphate (H),Cresylphosphate (K),Cresylphosphate (R),Cresylphosphate (S),Cresylphosphate (T),Cresylphosphate (Y),CresylSaligeninPhosphate (H),CresylSaligeninPhosphate (K),CresylSaligeninPhosphate (R),CresylSaligeninPhosphate (S),CresylSaligeninPhosphate (T),CresylSaligeninPhosphate (Y),Crotonaldehyde (C),Crotonaldehyde (H),Crotonaldehyde (K),Crotonyl (K),CuSMo (C),CUSTOM0 (A),CUSTOM0 (C),CUSTOM0 (C-term),CUSTOM0 (D),CUSTOM0 (E),CUSTOM0 (F),CUSTOM0 (G),CUSTOM0 (H),CUSTOM0 (I),CUSTOM0 (K),CUSTOM0 (L),CUSTOM0 (M),CUSTOM0 (N),CUSTOM0 (N-term),CUSTOM0 (P),CUSTOM0 (Q),CUSTOM0 (R),CUSTOM0 (S),CUSTOM0 (T),CUSTOM0 (V),CUSTOM0 (W),CUSTOM0 (Y),CUSTOM1 (A),CUSTOM1 (C),CUSTOM1 (C-term),CUSTOM1 (D),CUSTOM1 (E),CUSTOM1 (F),CUSTOM1 (G),CUSTOM1 (H),CUSTOM1 (I),CUSTOM1 (K),CUSTOM1 (L),CUSTOM1 (M),CUSTOM1 (N),CUSTOM1 (N-term),CUSTOM1 (P),CUSTOM1 (Q),CUSTOM1 (R),CUSTOM1 (S),CUSTOM1 (T),CUSTOM1 (V),CUSTOM1 (W),CUSTOM1 (Y),CUSTOM2 (A),CUSTOM2 (C),CUSTOM2 (C-term),CUSTOM2 (D),CUSTOM2 (E),CUSTOM2 (F),CUSTOM2 (G),CUSTOM2 (H),CUSTOM2 (I),CUSTOM2 (K),CUSTOM2 (L),CUSTOM2 (M),CUSTOM2 (N),CUSTOM2 (N-term),CUSTOM2 (P),CUSTOM2 (Q),CUSTOM2 (R),CUSTOM2 (S),CUSTOM2 (T),CUSTOM2 (V),CUSTOM2 (W),CUSTOM2 (Y),CUSTOM3 (A),CUSTOM3 (C),CUSTOM3 (C-term),CUSTOM3 (D),CUSTOM3 (E),CUSTOM3 (F),CUSTOM3 (G),CUSTOM3 (H),CUSTOM3 (I),CUSTOM3 (K),CUSTOM3 (L),CUSTOM3 (M),CUSTOM3 (N),CUSTOM3 (N-term),CUSTOM3 (P),CUSTOM3 (Q),CUSTOM3 (R),CUSTOM3 (S),CUSTOM3 (T),CUSTOM3 (V),CUSTOM3 (W),CUSTOM3 (Y),CUSTOM4 (A),CUSTOM4 (C),CUSTOM4 (C-term),CUSTOM4 (D),CUSTOM4 (E),CUSTOM4 (F),CUSTOM4 (G),CUSTOM4 (H),CUSTOM4 (I),CUSTOM4 (K),CUSTOM4 (L),CUSTOM4 (M),CUSTOM4 (N),CUSTOM4 (N-term),CUSTOM4 (P),CUSTOM4 (Q),CUSTOM4 (R),CUSTOM4 (S),CUSTOM4 (T),CUSTOM4 (V),CUSTOM4 (W),CUSTOM4 (Y),CUSTOM5 (A),CUSTOM5 (C),CUSTOM5 (C-term),CUSTOM5 (D),CUSTOM5 (E),CUSTOM5 (F),CUSTOM5 (G),CUSTOM5 (H),CUSTOM5 (I),CUSTOM5 (K),CUSTOM5 (L),CUSTOM5 (M),CUSTOM5 (N),CUSTOM5 (N-term),CUSTOM5 (P),CUSTOM5 (Q),CUSTOM5 (R),CUSTOM5 (S),CUSTOM5 (T),CUSTOM5 (V),CUSTOM5 (W),CUSTOM5 (Y),CUSTOM6 (A),CUSTOM6 (C),CUSTOM6 (C-term),CUSTOM6 (D),CUSTOM6 (E),CUSTOM6 (F),CUSTOM6 (G),CUSTOM6 (H),CUSTOM6 (I),CUSTOM6 (K),CUSTOM6 (L),CUSTOM6 (M),CUSTOM6 (N),CUSTOM6 (N-term),CUSTOM6 (P),CUSTOM6 (Q),CUSTOM6 (R),CUSTOM6 (S),CUSTOM6 (T),CUSTOM6 (V),CUSTOM6 (W),CUSTOM6 (Y),CUSTOM7 (A),CUSTOM7 (C),CUSTOM7 (C-term),CUSTOM7 (D),CUSTOM7 (E),CUSTOM7 (F),CUSTOM7 (G),CUSTOM7 (H),CUSTOM7 (I),CUSTOM7 (K),CUSTOM7 (L),CUSTOM7 (M),CUSTOM7 (N),CUSTOM7 (N-term),CUSTOM7 (P),CUSTOM7 (Q),CUSTOM7 (R),CUSTOM7 (S),CUSTOM7 (T),CUSTOM7 (V),CUSTOM7 (W),CUSTOM7 (Y),CUSTOM8 (A),CUSTOM8 (C),CUSTOM8 (C-term),CUSTOM8 (D),CUSTOM8 (E),CUSTOM8 (F),CUSTOM8 (G),CUSTOM8 (H),CUSTOM8 (I),CUSTOM8 (K),CUSTOM8 (L),CUSTOM8 (M),CUSTOM8 (N),CUSTOM8 (N-term),CUSTOM8 (P),CUSTOM8 (Q),CUSTOM8 (R),CUSTOM8 (S),CUSTOM8 (T),CUSTOM8 (V),CUSTOM8 (W),CUSTOM8 (Y),CUSTOM9 (A),CUSTOM9 (C),CUSTOM9 (C-term),CUSTOM9 (D),CUSTOM9 (E),CUSTOM9 (F),CUSTOM9 (G),CUSTOM9 (H),CUSTOM9 (I),CUSTOM9 (K),CUSTOM9 (L),CUSTOM9 (M),CUSTOM9 (N),CUSTOM9 (N-term),CUSTOM9 (P),CUSTOM9 (Q),CUSTOM9 (R),CUSTOM9 (S),CUSTOM9 (T),CUSTOM9 (V),CUSTOM9 (W),CUSTOM9 (Y),Cy3-maleimide (C),Cy3b-maleimide (C),Cyano (C),CyDye-Cy3 (C),CyDye-Cy5 (C),Cys->Ala (C),Cys->Arg (C),Cys->Asn (C),Cys->Asp (C),Cys->CamSec (C),Cys->Dha (C),Cys->ethylaminoAla (C),Cys->Gln (C),Cys->Glu (C),Cys->Gly (C),Cys->His (C),Cys->Lys (C),Cys->Met (C),Cys->methylaminoAla (C),Cys->Oxoalanine (C),Cys->Phe (C),Cys->Pro (C),Cys->PyruvicAcid (Protein N-term C),Cys->SecNEM (C),Cys->SecNEM:2H(5) (C),Cys->Ser (C),Cys->Thr (C),Cys->Trp (C),Cys->Tyr (C),Cys->Val (C),Cys->Xle (C),Cysteinyl (C),cysTMT (C),cysTMT6plex (C),Cytopiloyne (C),Cytopiloyne (K),Cytopiloyne (N-term),Cytopiloyne (P),Cytopiloyne (R),Cytopiloyne (S),Cytopiloyne (Y),Cytopiloyne+water (C),Cytopiloyne+water (K),Cytopiloyne+water (N-term),Cytopiloyne+water (R),Cytopiloyne+water (S),Cytopiloyne+water (T),Cytopiloyne+water (Y),DAET (S),DAET (T),Dansyl (K),Dansyl (N-term),Dap-DSP (A),Dap-DSP (E),Dap-DSP (K),Deamidated (N),Deamidated (Protein N-term F),Deamidated (Q),Deamidated (R),Deamidated:18O(1) (N),Deamidated:18O(1) (Q),Decanoyl (S),Decanoyl (T),DEDGFLYMVYASQETFG (K),Dehydrated (D),Dehydrated (N-term C),Dehydrated (Protein C-term N),Dehydrated (Protein C-term Q),Dehydrated (S),Dehydrated (T),Dehydrated (Y),Dehydro (C),Delta:H(1)N(-1)18O(1) (N),Delta:H(2)C(2) (H),Delta:H(2)C(2) (K),Delta:H(2)C(2) (N-term),Delta:H(2)C(2) (Protein N-term),Delta:H(2)C(3) (K),Delta:H(2)C(3)O(1) (K),Delta:H(2)C(3)O(1) (R),Delta:H(2)C(5) (K),Delta:H(4)C(2) (H),Delta:H(4)C(2) (K),Delta:H(4)C(2) (N-term),Delta:H(4)C(2)O(-1)S(1) (S),Delta:H(4)C(3) (H),Delta:H(4)C(3) (K),Delta:H(4)C(3) (Protein N-term),Delta:H(4)C(3)O(1) (C),Delta:H(4)C(3)O(1) (H),Delta:H(4)C(3)O(1) (K),Delta:H(4)C(6) (K),Delta:H(5)C(2) (P),Delta:H(6)C(3)O(1) (C),Delta:H(6)C(3)O(1) (H),Delta:H(6)C(3)O(1) (K),Delta:H(6)C(3)O(1) (Protein N-term),Delta:H(6)C(6)O(1) (K),Delta:H(8)C(6)O(1) (K),Delta:H(8)C(6)O(1) (Protein N-term),Delta:H(8)C(6)O(2) (K),Delta:Hg(1) (C),Delta:S(-1)Se(1) (C),Delta:S(-1)Se(1) (M),Delta:Se(1) (C),Deoxy (D),Deoxy (S),Deoxy (T),Deoxyhypusine (K),Deoxyhypusine (Q),DeStreak (C),Dethiomethyl (M),DFDNB (K),DFDNB (N),DFDNB (Q),DFDNB (R),dHex (N),dHex (S),dHex (T),dHex(1)Hex(1) (S),dHex(1)Hex(1) (T),dHex(1)Hex(1)HexA(1)HexNAc(3) (S),dHex(1)Hex(1)HexA(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(1)Kdn(1) (S),dHex(1)Hex(1)HexNAc(1)Kdn(1) (T),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(2)Kdn(1) (S),dHex(1)Hex(1)HexNAc(2)Kdn(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(1)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3) (S),dHex(1)Hex(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(1)HexNAc(4) (S),dHex(1)Hex(1)HexNAc(4) (T),dHex(1)Hex(2) (S),dHex(1)Hex(2) (T),dHex(1)Hex(2)HexA(1) (S),dHex(1)Hex(2)HexA(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(2) (S),dHex(1)Hex(2)HexA(1)HexNAc(2) (T),dHex(1)Hex(2)HexNAc(1) (S),dHex(1)Hex(2)HexNAc(1) (T),dHex(1)Hex(2)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (T),dHex(1)Hex(2)HexNAc(2)Pent(1) (N),dHex(1)Hex(2)HexNAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3) (N),dHex(1)Hex(2)HexNAc(3) (S),dHex(1)Hex(2)HexNAc(3) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)Sulf(1) (T),dHex(1)Hex(2)HexNAc(4) (S),dHex(1)Hex(2)HexNAc(4) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (T),dHex(1)Hex(3) (S),dHex(1)Hex(3) (T),dHex(1)Hex(3)HexA(1)HexNAc(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(2) (S),dHex(1)Hex(3)HexA(1)HexNAc(2) (T),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexA(2)HexNAc(2) (S),dHex(1)Hex(3)HexA(2)HexNAc(2) (T),dHex(1)Hex(3)HexNAc(1) (S),dHex(1)Hex(3)HexNAc(1) (T),dHex(1)Hex(3)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexNAc(2) (N),dHex(1)Hex(3)HexNAc(2) (S),dHex(1)Hex(3)HexNAc(2) (T),dHex(1)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(3)HexNAc(2)Pent(1) (N),dHex(1)Hex(3)HexNAc(2)Sulf(1) (N),dHex(1)Hex(3)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexNAc(3) (N),dHex(1)Hex(3)HexNAc(3) (S),dHex(1)Hex(3)HexNAc(3) (T),dHex(1)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(1)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(1)Hex(3)HexNAc(3)Pent(1) (N),dHex(1)Hex(3)HexNAc(3)Pent(2) (N),dHex(1)Hex(3)HexNAc(3)Pent(3) (N),dHex(1)Hex(3)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexNAc(4) (N),dHex(1)Hex(3)HexNAc(4) (S),dHex(1)Hex(3)HexNAc(4) (T),dHex(1)Hex(3)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(3)HexNAc(4)Pent(1) (N),dHex(1)Hex(3)HexNAc(4)Pent(2) (N),dHex(1)Hex(3)HexNAc(4)Pent(3) (N),dHex(1)Hex(3)HexNAc(4)Sulf(1) (N),dHex(1)Hex(3)HexNAc(5) (N),dHex(1)Hex(3)HexNAc(5) (S),dHex(1)Hex(3)HexNAc(5) (T),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (N),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (S),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (T),dHex(1)Hex(3)HexNAc(5)Sulf(1) (N),dHex(1)Hex(3)HexNAc(6) (N),dHex(1)Hex(3)HexNAc(6) (S),dHex(1)Hex(3)HexNAc(6) (T),dHex(1)Hex(3)HexNAc(6)Sulf(1) (N),dHex(1)Hex(4) (S),dHex(1)Hex(4) (T),dHex(1)Hex(4)HexA(1)HexNAc(2) (S),dHex(1)Hex(4)HexA(1)HexNAc(2) (T),dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(4)HexNAc(1)Pent(1) (N),dHex(1)Hex(4)HexNAc(2) (N),dHex(1)Hex(4)HexNAc(2) (S),dHex(1)Hex(4)HexNAc(2) (T),dHex(1)Hex(4)HexNAc(2)Pent(1) (N),dHex(1)Hex(4)HexNAc(3) (N),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (N),dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(1)Hex(4)HexNAc(3)NeuGc(1) (N),dHex(1)Hex(4)HexNAc(3)Pent(1) (N),dHex(1)Hex(4)HexNAc(3)Sulf(1) (N),dHex(1)Hex(4)HexNAc(4) (N),dHex(1)Hex(4)HexNAc(4) (S),dHex(1)Hex(4)HexNAc(4) (T),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1) (N),dHex(1)Hex(4)HexNAc(4)Pent(1) (N),dHex(1)Hex(4)HexNAc(4)Sulf(1) (N),dHex(1)Hex(4)HexNAc(5) (N),dHex(1)Hex(4)HexNAc(5)Sulf(1) (N),dHex(1)Hex(5) (S),dHex(1)Hex(5) (T),dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1) (N),dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2) (N),dHex(1)Hex(5)HexNAc(2) (N),dHex(1)Hex(5)HexNAc(2)Pent(1) (N),dHex(1)Hex(5)HexNAc(3) (N),dHex(1)Hex(5)HexNAc(3)NeuAc(1) (N),dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(1)Hex(5)HexNAc(3)NeuGc(1) (N),dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1) (N),dHex(1)Hex(5)HexNAc(3)Sulf(1) (N),dHex(1)Hex(5)HexNAc(4) (N),dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1) (N),dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N),dHex(1)Hex(5)HexNAc(4)Pent(1) (N),dHex(1)Hex(5)HexNAc(4)Sulf(1) (N),dHex(1)Hex(5)HexNAc(4)Sulf(2) (N),dHex(1)Hex(5)HexNAc(5) (N),dHex(1)Hex(6) (S),dHex(1)Hex(6) (T),dHex(1)Hex(6)HexNAc(2) (N),dHex(1)Hex(6)HexNAc(3) (N),dHex(1)Hex(6)HexNAc(3)Sulf(1) (N),dHex(1)Hex(6)HexNAc(4) (N),dHex(1)Hex(7)HexNAc(2) (N),dHex(1)Hex(7)HexNAc(3) (N),dHex(1)Hex(7)HexNAc(3)Phos(1) (N),dHex(1)Hex(7)HexNAc(3)Sulf(1) (N),dHex(1)Hex(7)HexNAc(4) (N),dHex(1)HexNAc(3) (S),dHex(1)HexNAc(3) (T),dHex(1)HexNAc(4) (S),dHex(1)HexNAc(4) (T),dHex(1)HexNAc(5) (S),dHex(1)HexNAc(5) (T),dHex(2)Hex(1)HexNAc(1)Kdn(1) (S),dHex(2)Hex(1)HexNAc(1)Kdn(1) (T),dHex(2)Hex(1)HexNAc(2)Kdn(1) (S),dHex(2)Hex(1)HexNAc(2)Kdn(1) (T),dHex(2)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(2)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(2)Hex(1)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(1)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(1)HexNAc(3) (S),dHex(2)Hex(1)HexNAc(3) (T),dHex(2)Hex(2) (S),dHex(2)Hex(2) (T),dHex(2)Hex(2)HexA(1) (S),dHex(2)Hex(2)HexA(1) (T),dHex(2)Hex(2)HexA(1)HexNAc(1) (S),dHex(2)Hex(2)HexA(1)HexNAc(1) (T),dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(2)HexNAc(1) (S),dHex(2)Hex(2)HexNAc(1) (T),dHex(2)Hex(2)HexNAc(2) (N),dHex(2)Hex(2)HexNAc(2) (S),dHex(2)Hex(2)HexNAc(2) (T),dHex(2)Hex(2)HexNAc(2)Kdn(1) (S),dHex(2)Hex(2)HexNAc(2)Kdn(1) (T),dHex(2)Hex(2)HexNAc(2)NeuAc(1) (S),dHex(2)Hex(2)HexNAc(2)NeuAc(1) (T),dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(2)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(2)HexNAc(2)Sulf(1) (S),dHex(2)Hex(2)HexNAc(2)Sulf(1) (T),dHex(2)Hex(2)HexNAc(2)Sulf(2) (S),dHex(2)Hex(2)HexNAc(2)Sulf(2) (T),dHex(2)Hex(2)HexNAc(3) (N),dHex(2)Hex(2)HexNAc(3) (S),dHex(2)Hex(2)HexNAc(3) (T),dHex(2)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(2)HexNAc(3)NeuGc(1) (S),dHex(2)Hex(2)HexNAc(3)NeuGc(1) (T),dHex(2)Hex(2)HexNAc(3)Sulf(1) (S),dHex(2)Hex(2)HexNAc(3)Sulf(1) (T),dHex(2)Hex(2)HexNAc(4) (S),dHex(2)Hex(2)HexNAc(4) (T),dHex(2)Hex(2)HexNAc(5) (S),dHex(2)Hex(2)HexNAc(5) (T),dHex(2)Hex(3) (S),dHex(2)Hex(3) (T),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(3)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexNAc(2) (N),dHex(2)Hex(3)HexNAc(2) (S),dHex(2)Hex(3)HexNAc(2) (T),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(3)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexNAc(3) (N),dHex(2)Hex(3)HexNAc(3) (S),dHex(2)Hex(3)HexNAc(3) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(2)Hex(3)HexNAc(3)NeuGc(1) (S),dHex(2)Hex(3)HexNAc(3)NeuGc(1) (T),dHex(2)Hex(3)HexNAc(3)Pent(1) (N),dHex(2)Hex(3)HexNAc(3)Pent(2) (N),dHex(2)Hex(3)HexNAc(4) (N),dHex(2)Hex(3)HexNAc(4) (S),dHex(2)Hex(3)HexNAc(4) (T),dHex(2)Hex(3)HexNAc(4)Pent(1) (N),dHex(2)Hex(3)HexNAc(4)Pent(2) (N),dHex(2)Hex(3)HexNAc(5) (S),dHex(2)Hex(3)HexNAc(5) (T),dHex(2)Hex(3)HexNAc(6) (N),dHex(2)Hex(4) (S),dHex(2)Hex(4) (T),dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(4)HexNAc(1) (S),dHex(2)Hex(4)HexNAc(1) (T),dHex(2)Hex(4)HexNAc(2) (N),dHex(2)Hex(4)HexNAc(2) (S),dHex(2)Hex(4)HexNAc(2) (T),dHex(2)Hex(4)HexNAc(3) (N),dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(2)Hex(4)HexNAc(3)Pent(1) (N),dHex(2)Hex(4)HexNAc(4) (N),dHex(2)Hex(4)HexNAc(4) (S),dHex(2)Hex(4)HexNAc(4) (T),dHex(2)Hex(4)HexNAc(4)Pent(1) (N),dHex(2)Hex(4)HexNAc(4)Sulf(1) (N),dHex(2)Hex(4)HexNAc(5) (N),dHex(2)Hex(4)HexNAc(5) (S),dHex(2)Hex(4)HexNAc(5) (T),dHex(2)Hex(5)HexNAc(3)Pent(1) (N),dHex(2)Hex(5)HexNAc(4) (N),dHex(2)HexNAc(2)Kdn(1) (S),dHex(2)HexNAc(2)Kdn(1) (T),dHex(2)HexNAc(5) (S),dHex(2)HexNAc(5) (T),dHex(2)HexNAc(7) (S),dHex(2)HexNAc(7) (T),dHex(3)Hex(1)HexNAc(2)Kdn(1) (S),dHex(3)Hex(1)HexNAc(2)Kdn(1) (T),dHex(3)Hex(1)HexNAc(3)Kdn(1) (S),dHex(3)Hex(1)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(3)Hex(2)HexNAc(2) (S),dHex(3)Hex(2)HexNAc(2) (T),dHex(3)Hex(2)HexNAc(2)Kdn(1) (S),dHex(3)Hex(2)HexNAc(2)Kdn(1) (T),dHex(3)Hex(2)HexNAc(3) (S),dHex(3)Hex(2)HexNAc(3) (T),dHex(3)Hex(2)HexNAc(3)Kdn(1) (S),dHex(3)Hex(2)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexNAc(4) (S),dHex(3)Hex(2)HexNAc(4) (T),dHex(3)Hex(3)HexNAc(3) (S),dHex(3)Hex(3)HexNAc(3) (T),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(3)Hex(3)HexNAc(3)Pent(1) (N),dHex(3)Hex(3)HexNAc(4) (N),dHex(3)Hex(3)HexNAc(4)Pent(1) (N),dHex(3)Hex(4)HexNAc(4) (N),dHex(3)Hex(4)HexNAc(4) (S),dHex(3)Hex(4)HexNAc(4) (T),dHex(3)Hex(4)HexNAc(4)Sulf(1) (N),dHex(3)HexNAc(3)Kdn(1) (S),dHex(3)HexNAc(3)Kdn(1) (T),dHex(4)Hex(1)HexNAc(1)Kdn(2) (S),dHex(4)Hex(1)HexNAc(1)Kdn(2) (T),dHex(4)Hex(1)HexNAc(2)Kdn(1) (S),dHex(4)Hex(1)HexNAc(2)Kdn(1) (T),dHex(4)Hex(1)HexNAc(3)Kdn(1) (S),dHex(4)Hex(1)HexNAc(3)Kdn(1) (T),dHex(4)Hex(2)HexNAc(2)Kdn(1) (S),dHex(4)Hex(2)HexNAc(2)Kdn(1) (T),dHex(4)Hex(2)HexNAc(3) (S),dHex(4)Hex(2)HexNAc(3) (T),dHex(4)Hex(3)HexNAc(3) (S),dHex(4)Hex(3)HexNAc(3) (T),dHex(4)HexNAc(3)Kdn(1) (S),dHex(4)HexNAc(3)Kdn(1) (T),DHP (C),Diacylglycerol (C),DiART6plex (K),DiART6plex (N-term),DiART6plex (Protein N-term),DiART6plex (Y),DiART6plex115 (K),DiART6plex115 (N-term),DiART6plex115 (Protein N-term),DiART6plex115 (Y),DiART6plex116/119 (K),DiART6plex116/119 (N-term),DiART6plex116/119 (Protein N-term),DiART6plex116/119 (Y),DiART6plex117 (K),DiART6plex117 (N-term),DiART6plex117 (Protein N-term),DiART6plex117 (Y),DiART6plex118 (K),DiART6plex118 (N-term),DiART6plex118 (Protein N-term),DiART6plex118 (Y),Dibromo (Y),Dicarbamidomethyl (C),Dicarbamidomethyl (H),Dicarbamidomethyl (K),Dicarbamidomethyl (N-term),Dicarbamidomethyl (R),dichlorination (C),dichlorination (Y),Didehydro (C-term K),Didehydro (S),Didehydro (T),Didehydro (Y),Didehydroretinylidene (K),Diethyl (K),Diethyl (N-term),Diethylphosphate (C),Diethylphosphate (H),Diethylphosphate (K),Diethylphosphate (N-term),Diethylphosphate (S),Diethylphosphate (T),Diethylphosphate (Y),Difuran (Y),Dihydroxyimidazolidine (R),Diiodo (H),Diiodo (Y),Diironsubcluster (C),Diisopropylphosphate (K),Diisopropylphosphate (N-term),Diisopropylphosphate (S),Diisopropylphosphate (T),Diisopropylphosphate (Y),DiLeu4plex (K),DiLeu4plex (N-term),DiLeu4plex (Y),DiLeu4plex115 (K),DiLeu4plex115 (N-term),DiLeu4plex115 (Y),DiLeu4plex117 (K),DiLeu4plex117 (N-term),DiLeu4plex117 (Y),DiLeu4plex118 (K),DiLeu4plex118 (N-term),DiLeu4plex118 (Y),Dimethyl (K),Dimethyl (N),Dimethyl (N-term),Dimethyl (Protein N-term P),Dimethyl (Protein N-term),Dimethyl (R),Dimethyl:2H(2)13C (K),Dimethyl:2H(2)13C (N),Dimethyl:2H(2)13C (N-term),Dimethyl:2H(2)13C (Protein N-term P),Dimethyl:2H(2)13C (R),Dimethyl:2H(4) (K),Dimethyl:2H(4) (N-term),Dimethyl:2H(4) (Protein N-term),Dimethyl:2H(4) (R),Dimethyl:2H(4)13C(2) (K),Dimethyl:2H(4)13C(2) (N-term),Dimethyl:2H(4)13C(2) (Protein N-term),Dimethyl:2H(4)13C(2) (R),Dimethyl:2H(6) (K),Dimethyl:2H(6) (N-term),Dimethyl:2H(6) (R),Dimethyl:2H(6)13C(2) (K),Dimethyl:2H(6)13C(2) (N-term),Dimethyl:2H(6)13C(2) (Protein N-term),Dimethyl:2H(6)13C(2) (R),DimethylamineGMBS (C),DimethylArsino (C),DimethylpyrroleAdduct (K),Dioxidation (C),Dioxidation (F),Dioxidation (K),Dioxidation (M),Dioxidation (P),Dioxidation (R),Dioxidation (U),Dioxidation (W),Dioxidation (Y),Diphthamide (H),Dipyridyl (C),Dipyrrolylmethanemethyl (C),DMPO (C),DMPO (H),DMPO (Y),DNCB_hapten (C),DNCB_hapten (H),DNCB_hapten (K),DNCB_hapten (Y),dNIC (K),dNIC (N-term),DNPS (C),DNPS (W),DTBP (K),DTBP (N),DTBP (Protein N-term),DTBP (Q),DTBP (R),DTT_C (C),DTT_C:2H(6) (C),DTT_ST (S),DTT_ST (T),DTT_ST:2H(6) (S),DTT_ST:2H(6) (T),DyLight-maleimide (C),EDEDTIDVFQQQTGG (K),EDT-iodoacetyl-PEO-biotin (S),EDT-iodoacetyl-PEO-biotin (T),EDT-maleimide-PEO-biotin (S),EDT-maleimide-PEO-biotin (T),EEEDVIEVYQEQTGG (K),EGCG1 (C),EGCG2 (C),EHD-diphenylpentanone (C),EHD-diphenylpentanone (M),EQAT (C),EQAT:2H(5) (C),EQIGG (K),ESP (K),ESP (N-term),ESP:2H(10) (K),ESP:2H(10) (N-term),Ethanedithiol (S),Ethanedithiol (T),Ethanolamine (C),Ethanolamine (C-term),Ethanolamine (D),Ethanolamine (E),Ethanolyl (C),Ethanolyl (K),Ethanolyl (R),Ethoxyformyl (H),Ethyl (C-term),Ethyl (D),Ethyl (E),Ethyl (K),Ethyl (N-term),Ethyl (Protein N-term),Ethyl+Deamidated (N),Ethyl+Deamidated (Q),ethylamino (S),ethylamino (T),Ethylphosphate (K),Ethylphosphate (N-term),Ethylphosphate (S),Ethylphosphate (T),Ethylphosphate (Y),ethylsulfonylethyl (C),ethylsulfonylethyl (H),ethylsulfonylethyl (K),ExacTagAmine (K),ExacTagThiol (C),FAD (C),FAD (H),FAD (Y),Farnesyl (C),Fluorescein (C),Fluorescein-tyramine (Y),Fluoro (A),Fluoro (F),Fluoro (W),Fluoro (Y),FMN (S),FMN (T),FMNC (C),FMNH (C),FMNH (H),FNEM (C),Formyl (K),Formyl (N-term),Formyl (Protein N-term),Formyl (S),Formyl (T),FormylMet (Protein N-term),FP-Biotin (K),FP-Biotin (S),FP-Biotin (T),FP-Biotin (Y),FTC (C),FTC (K),FTC (P),FTC (R),FTC (S),Furan (Y),G-H1 (R),Galactosyl (K),Galactosyl (N-term),GEE (Q),GeranylGeranyl (C),GG (C),GG (K),GG (S),GG (T),GGQ (K),GIST-Quat (K),GIST-Quat (N-term),GIST-Quat:2H(3) (K),GIST-Quat:2H(3) (N-term),GIST-Quat:2H(6) (K),GIST-Quat:2H(6) (N-term),GIST-Quat:2H(9) (K),GIST-Quat:2H(9) (N-term),Gln->Ala (Q),Gln->Arg (Q),Gln->Asn (Q),Gln->Asp (Q),Gln->Cys (Q),Gln->Glu (Q),Gln->Gly (Q),Gln->His (Q),Gln->Lys (Q),Gln->Met (Q),Gln->Phe (Q),Gln->Pro (Q),Gln->pyro-Glu (N-term Q),Gln->Ser (Q),Gln->Thr (Q),Gln->Trp (Q),Gln->Tyr (Q),Gln->Val (Q),Gln->Xle (Q),Glu (E),Glu (Protein C-term),Glu->Ala (E),Glu->Arg (E),Glu->Asn (E),Glu->Asp (E),Glu->Cys (E),Glu->Gln (E),Glu->Gly (E),Glu->His (E),Glu->Lys (E),Glu->Met (E),Glu->Phe (E),Glu->Pro (E),Glu->pyro-Glu (N-term E),Glu->pyro-Glu+Methyl (N-term E),Glu->pyro-Glu+Methyl (N-term E),Glu->pyro-Glu+Methyl:2H(2)13C (N-term E),Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E),Glu->Ser (E),Glu->Thr (E),Glu->Trp (E),Glu->Tyr (E),Glu->Val (E),Glu->Xle (E),glucosone (R),Glucosylgalactosyl (K),Glucuronyl (Protein N-term),Glucuronyl (S),Glucuronyl (T),GluGlu (E),GluGlu (Protein C-term),GluGluGlu (E),GluGluGlu (Protein C-term),GluGluGluGlu (E),GluGluGluGlu (Protein C-term),Glutathione (C),Gly (K),Gly (S),Gly (T),Gly->Ala (G),Gly->Arg (G),Gly->Asn (G),Gly->Asp (G),Gly->Cys (G),Gly->Gln (G),Gly->Glu (G),Gly->His (G),Gly->Lys (G),Gly->Met (G),Gly->Phe (G),Gly->Pro (G),Gly->Ser (G),Gly->Thr (G),Gly->Trp (G),Gly->Tyr (G),Gly->Val (G),Gly->Xle (G),Gly-loss+Amide (C-term G),Glycerophospho (S),GlycerylPE (E),glycidamide (K),glycidamide (N-term),Glycosyl (P),GPIanchor (Protein C-term),Guanidinyl (K),Guanidinyl (N-term),HCysteinyl (C),HCysThiolactone (K),Heme (C),Heme (H),Hep (K),Hep (N),Hep (Q),Hep (R),Hep (S),Hep (T),Hex (C),Hex (K),Hex (N),Hex (N-term),Hex (R),Hex (S),Hex (T),Hex (W),Hex (Y),Hex(1)HexA(1) (S),Hex(1)HexA(1) (T),Hex(1)HexA(1)HexNAc(1) (S),Hex(1)HexA(1)HexNAc(1) (T),Hex(1)HexA(1)HexNAc(2) (S),Hex(1)HexA(1)HexNAc(2) (T),Hex(1)HexNAc(1) (N),Hex(1)HexNAc(1) (S),Hex(1)HexNAc(1) (T),Hex(1)HexNAc(1)dHex(1) (N),Hex(1)HexNAc(1)dHex(1) (S),Hex(1)HexNAc(1)dHex(1) (T),Hex(1)HexNAc(1)dHex(1)Me(1) (S),Hex(1)HexNAc(1)dHex(1)Me(1) (T),Hex(1)HexNAc(1)dHex(1)Me(2) (S),Hex(1)HexNAc(1)dHex(1)Me(2) (T),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(1) (N),Hex(1)HexNAc(1)NeuAc(1) (S),Hex(1)HexNAc(1)NeuAc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(2) (N),Hex(1)HexNAc(1)NeuAc(2) (S),Hex(1)HexNAc(1)NeuAc(2) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T),Hex(1)HexNAc(1)NeuAc(3) (S),Hex(1)HexNAc(1)NeuAc(3) (T),Hex(1)HexNAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuGc(2) (S),Hex(1)HexNAc(1)NeuGc(2) (T),Hex(1)HexNAc(1)NeuGc(3) (S),Hex(1)HexNAc(1)NeuGc(3) (T),Hex(1)HexNAc(1)NeuGc(4) (S),Hex(1)HexNAc(1)NeuGc(4) (T),Hex(1)HexNAc(1)NeuGc(5) (S),Hex(1)HexNAc(1)NeuGc(5) (T),Hex(1)HexNAc(1)Phos(1) (S),Hex(1)HexNAc(1)Phos(1) (T),Hex(1)HexNAc(1)Sulf(1) (S),Hex(1)HexNAc(1)Sulf(1) (T),Hex(1)HexNAc(2) (N),Hex(1)HexNAc(2) (S),Hex(1)HexNAc(2) (T),Hex(1)HexNAc(2)dHex(1) (N),Hex(1)HexNAc(2)dHex(1) (S),Hex(1)HexNAc(2)dHex(1) (T),Hex(1)HexNAc(2)dHex(1)Pent(1) (N),Hex(1)HexNAc(2)dHex(2) (N),Hex(1)HexNAc(2)dHex(2) (S),Hex(1)HexNAc(2)dHex(2) (T),Hex(1)HexNAc(2)NeuAc(1) (S),Hex(1)HexNAc(2)NeuAc(1) (T),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(2)NeuAc(2) (S),Hex(1)HexNAc(2)NeuAc(2) (T),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(1)HexNAc(2)NeuGc(1) (S),Hex(1)HexNAc(2)NeuGc(1) (T),Hex(1)HexNAc(2)Pent(1) (N),Hex(1)HexNAc(2)Sulf(1) (S),Hex(1)HexNAc(2)Sulf(1) (T),Hex(1)HexNAc(3) (S),Hex(1)HexNAc(3) (T),Hex(1)HexNAc(3)NeuAc(1) (S),Hex(1)HexNAc(3)NeuAc(1) (T),Hex(1)HexNAc(3)NeuAc(2) (S),Hex(1)HexNAc(3)NeuAc(2) (T),Hex(1)HexNAc(3)NeuGc(1) (S),Hex(1)HexNAc(3)NeuGc(1) (T),Hex(1)HexNAc(3)Sulf(1) (S),Hex(1)HexNAc(3)Sulf(1) (T),Hex(1)NeuAc(1) (S),Hex(1)NeuAc(1) (T),Hex(1)NeuAc(1)Pent(1) (S),Hex(1)NeuAc(1)Pent(1) (T),Hex(1)NeuGc(1) (S),Hex(1)NeuGc(1) (T),Hex(1)Pent(1) (S),Hex(1)Pent(1) (T),Hex(1)Pent(2) (S),Hex(1)Pent(2) (T),Hex(10)Phos(3) (S),Hex(10)Phos(3) (T),Hex(2) (K),Hex(2) (R),Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (T),Hex(2)HexA(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)Pent(1)Sulf(1) (T),Hex(2)HexNAc(1) (S),Hex(2)HexNAc(1) (T),Hex(2)HexNAc(1)Me(1) (S),Hex(2)HexNAc(1)Me(1) (T),Hex(2)HexNAc(1)NeuGc(1) (S),Hex(2)HexNAc(1)NeuGc(1) (T),Hex(2)HexNAc(1)NeuGc(2) (S),Hex(2)HexNAc(1)NeuGc(2) (T),Hex(2)HexNAc(1)NeuGc(3) (S),Hex(2)HexNAc(1)NeuGc(3) (T),Hex(2)HexNAc(1)NeuGc(4) (S),Hex(2)HexNAc(1)NeuGc(4) (T),Hex(2)HexNAc(1)Sulf(1) (S),Hex(2)HexNAc(1)Sulf(1) (T),Hex(2)HexNAc(2) (N),Hex(2)HexNAc(2) (S),Hex(2)HexNAc(2) (T),Hex(2)HexNAc(2)dHex(1) (N),Hex(2)HexNAc(2)dHex(1) (S),Hex(2)HexNAc(2)dHex(1) (T),Hex(2)HexNAc(2)NeuAc(1) (N),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(2)NeuAc(2) (S),Hex(2)HexNAc(2)NeuAc(2) (T),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(2)HexNAc(2)NeuGc(1) (S),Hex(2)HexNAc(2)NeuGc(1) (T),Hex(2)HexNAc(2)Pent(1) (N),Hex(2)HexNAc(2)Sulf(1) (S),Hex(2)HexNAc(2)Sulf(1) (T),Hex(2)HexNAc(3) (S),Hex(2)HexNAc(3) (T),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (S),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (T),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(3)NeuAc(2) (S),Hex(2)HexNAc(3)NeuAc(2) (T),Hex(2)HexNAc(3)NeuAc(3) (S),Hex(2)HexNAc(3)NeuAc(3) (T),Hex(2)HexNAc(3)NeuGc(1) (S),Hex(2)HexNAc(3)NeuGc(1) (T),Hex(2)HexNAc(3)NeuGc(2) (S),Hex(2)HexNAc(3)NeuGc(2) (T),Hex(2)HexNAc(3)NeuGc(3) (S),Hex(2)HexNAc(3)NeuGc(3) (T),Hex(2)HexNAc(3)Sulf(1) (S),Hex(2)HexNAc(3)Sulf(1) (T),Hex(2)HexNAc(4) (S),Hex(2)HexNAc(4) (T),Hex(2)HexNAc(4)NeuAc(1) (S),Hex(2)HexNAc(4)NeuAc(1) (T),Hex(2)HexNAc(5) (S),Hex(2)HexNAc(5) (T),Hex(2)NeuAc(1) (S),Hex(2)NeuAc(1) (T),Hex(3) (N),Hex(3) (S),Hex(3) (T),Hex(3)HexNAc(1) (S),Hex(3)HexNAc(1) (T),Hex(3)HexNAc(1)Me(1) (S),Hex(3)HexNAc(1)Me(1) (T),Hex(3)HexNAc(1)Pent(1) (N),Hex(3)HexNAc(2) (N),Hex(3)HexNAc(2) (S),Hex(3)HexNAc(2) (T),Hex(3)HexNAc(2)NeuAc(1) (N),Hex(3)HexNAc(2)NeuAc(2) (S),Hex(3)HexNAc(2)NeuAc(2) (T),Hex(3)HexNAc(2)Pent(1) (N),Hex(3)HexNAc(2)Phos(1) (N),Hex(3)HexNAc(3) (N),Hex(3)HexNAc(3) (S),Hex(3)HexNAc(3) (T),Hex(3)HexNAc(3)NeuAc(1) (S),Hex(3)HexNAc(3)NeuAc(1) (T),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(3)HexNAc(3)NeuAc(2) (S),Hex(3)HexNAc(3)NeuAc(2) (T),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (T),Hex(3)HexNAc(3)NeuGc(1) (S),Hex(3)HexNAc(3)NeuGc(1) (T),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (T),Hex(3)HexNAc(3)Pent(1) (N),Hex(3)HexNAc(3)Sulf(1) (S),Hex(3)HexNAc(3)Sulf(1) (T),Hex(3)HexNAc(4) (N),Hex(3)HexNAc(4) (S),Hex(3)HexNAc(4) (T),Hex(3)HexNAc(4)NeuAc(1) (N),Hex(3)HexNAc(4)Pent(1) (N),Hex(3)HexNAc(4)Sulf(1) (N),Hex(3)HexNAc(5) (N),Hex(3)HexNAc(5) (S),Hex(3)HexNAc(5) (T),Hex(3)HexNAc(5)Sulf(1) (N),Hex(3)HexNAc(6) (N),Hex(3)HexNAc(6) (S),Hex(3)HexNAc(6) (T),Hex(3)HexNAc(6)NeuAc(1) (N),Hex(3)HexNAc(6)Sulf(1) (N),Hex(3)HexNAc(6)Sulf(2) (N),Hex(3)HexNAc(7) (N),Hex(3)HexNAc(7)Sulf(1) (N),Hex(3)Phos(1) (S),Hex(3)Phos(1) (T),Hex(4) (S),Hex(4) (T),Hex(4)HexNAc(1) (S),Hex(4)HexNAc(1) (T),Hex(4)HexNAc(2) (N),Hex(4)HexNAc(2)NeuAc(1) (N),Hex(4)HexNAc(2)Pent(1) (N),Hex(4)HexNAc(3) (N),Hex(4)HexNAc(3) (S),Hex(4)HexNAc(3) (T),Hex(4)HexNAc(3)NeuAc(1) (N),Hex(4)HexNAc(3)NeuAc(1) (S),Hex(4)HexNAc(3)NeuAc(1) (T),Hex(4)HexNAc(3)NeuAc(2) (N),Hex(4)HexNAc(3)NeuGc(1) (N),Hex(4)HexNAc(3)Pent(1) (N),Hex(4)HexNAc(4) (N),Hex(4)HexNAc(4) (S),Hex(4)HexNAc(4) (T),Hex(4)HexNAc(4)Me(2)Pent(1) (N),Hex(4)HexNAc(4)NeuAc(1) (N),Hex(4)HexNAc(4)NeuAc(1) (S),Hex(4)HexNAc(4)NeuAc(1) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (T),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (T),Hex(4)HexNAc(4)Pent(1) (N),Hex(4)HexNAc(4)Sulf(1) (N),Hex(4)HexNAc(4)Sulf(2) (S),Hex(4)HexNAc(4)Sulf(2) (T),Hex(4)HexNAc(5) (N),Hex(4)HexNAc(5)NeuAc(1) (N),Hex(4)HexNAc(5)Sulf(1) (N),Hex(4)HexNAc(6) (N),Hex(4)Phos(1) (S),Hex(4)Phos(1) (T),Hex(5) (S),Hex(5) (T),Hex(5)HexNAc(1) (S),Hex(5)HexNAc(1) (T),Hex(5)HexNAc(2) (N),Hex(5)HexNAc(2)Phos(1) (N),Hex(5)HexNAc(3) (N),Hex(5)HexNAc(3)Pent(1) (N),Hex(5)HexNAc(4) (N),Hex(5)HexNAc(4) (S),Hex(5)HexNAc(4) (T),Hex(5)HexNAc(4)Me(2)Pent(1) (N),Hex(5)HexNAc(4)NeuAc(1) (N),Hex(5)HexNAc(4)NeuAc(1)Sulf(1) (N),Hex(5)HexNAc(4)NeuAc(2) (N),Hex(5)HexNAc(4)NeuGc(1) (N),Hex(5)HexNAc(4)Sulf(1) (N),Hex(5)HexNAc(5) (N),Hex(5)HexNAc(5) (S),Hex(5)HexNAc(5) (T),Hex(5)Phos(1) (S),Hex(5)Phos(1) (T),Hex(5)Phos(3) (S),Hex(5)Phos(3) (T),Hex(6)HexNAc(2) (N),Hex(6)HexNAc(2)Phos(1) (N),Hex(6)HexNAc(3) (N),Hex(6)HexNAc(3)Phos(1) (N),Hex(6)HexNAc(4) (N),Hex(6)HexNAc(4) (S),Hex(6)HexNAc(4) (T),Hex(6)HexNAc(4)Me(3) (N),Hex(6)HexNAc(4)Me(3)Pent(1) (N),Hex(6)HexNAc(5) (N),Hex(6)Phos(1) (S),Hex(6)Phos(1) (T),Hex(6)Phos(3) (S),Hex(6)Phos(3) (T),Hex(7)HexNAc(1) (N),Hex(7)HexNAc(2) (N),Hex(7)HexNAc(2)Phos(1) (N),Hex(7)HexNAc(2)Phos(2) (N),Hex(7)HexNAc(3) (N),Hex(7)HexNAc(3)Phos(1) (N),Hex(7)HexNAc(4) (N),Hex(7)Phos(3) (S),Hex(7)Phos(3) (T),Hex(8)HexNAc(1) (N),Hex(8)HexNAc(2) (N),Hex(8)Phos(3) (S),Hex(8)Phos(3) (T),Hex(9)HexNAc(2) (N),Hex(9)Phos(3) (S),Hex(9)Phos(3) (T),HexN (K),HexN (N),HexN (S),HexN (T),HexN (W),HexNAc (N),HexNAc (S),HexNAc (T),HexNAc(1)dHex(1) (N),HexNAc(1)dHex(1) (S),HexNAc(1)dHex(1) (T),HexNAc(1)dHex(2) (N),HexNAc(1)Kdn(2) (S),HexNAc(1)Kdn(2) (T),HexNAc(1)NeuAc(1) (S),HexNAc(1)NeuAc(1) (T),HexNAc(1)NeuGc(1) (S),HexNAc(1)NeuGc(1) (T),HexNAc(1)NeuGc(2) (S),HexNAc(1)NeuGc(2) (T),HexNAc(2) (N),HexNAc(2) (S),HexNAc(2) (T),HexNAc(2)dHex(1) (N),HexNAc(2)dHex(2) (N),HexNAc(2)NeuAc(1) (S),HexNAc(2)NeuAc(1) (T),HexNAc(2)NeuAc(1)Sulf(1) (S),HexNAc(2)NeuAc(1)Sulf(1) (T),HexNAc(2)NeuGc(1) (S),HexNAc(2)NeuGc(1) (T),HexNAc(3) (S),HexNAc(3) (T),HexNAc(3)Sulf(1) (S),HexNAc(3)Sulf(1) (T),HexNAc(4) (S),HexNAc(4) (T),HexNAc(5) (S),HexNAc(5) (T),His->Ala (H),His->Arg (H),His->Asn (H),His->Asp (H),His->Cys (H),His->Gln (H),His->Glu (H),His->Gly (H),His->Lys (H),His->Met (H),His->Phe (H),His->Pro (H),His->Ser (H),His->Thr (H),His->Trp (H),His->Tyr (H),His->Val (H),His->Xle (H),HMVK (C),HN2_mustard (C),HN2_mustard (H),HN2_mustard (K),HN3_mustard (C),HN3_mustard (H),HN3_mustard (K),HNE (A),HNE (C),HNE (H),HNE (K),HNE (L),HNE+Delta:H(2) (C),HNE+Delta:H(2) (H),HNE+Delta:H(2) (K),HNE-BAHAH (C),HNE-BAHAH (H),HNE-BAHAH (K),HNE-Delta:H(2)O (C),HNE-Delta:H(2)O (H),HNE-Delta:H(2)O (K),Homocysteic_acid (M),HPG (R),Hydroxamic_acid (D),Hydroxamic_acid (E),Hydroxycinnamyl (C),Hydroxyfarnesyl (C),Hydroxyheme (E),Hydroxymethyl (N),HydroxymethylOP (K),Hydroxytrimethyl (K),Hypusine (K),IASD (C),IBTP (C),ICAT-C (C),ICAT-C:13C(9) (C),ICAT-D (C),ICAT-D:2H(8) (C),ICAT-G (C),ICAT-G:2H(8) (C),ICAT-H (C),ICAT-H:13C(6) (C),ICDID (C),ICDID:2H(6) (C),ICPL (K),ICPL (N-term),ICPL (Protein N-term),ICPL:13C(6) (K),ICPL:13C(6) (N-term),ICPL:13C(6) (Protein N-term),ICPL:13C(6)2H(4) (K),ICPL:13C(6)2H(4) (N-term),ICPL:13C(6)2H(4) (Protein N-term),ICPL:2H(4) (K),ICPL:2H(4) (N-term),ICPL:2H(4) (Protein N-term),IDEnT (C),IED-Biotin (C),IGBP (C),IGBP:13C(2) (C),IMEHex(2)NeuAc(1) (K),IMID (K),IMID:2H(4) (K),Iminobiotin (K),Iminobiotin (N-term),Iodo (H),Iodo (Y),Iodoacetanilide (C),Iodoacetanilide (K),Iodoacetanilide (N-term),Iodoacetanilide:13C(6) (C),Iodoacetanilide:13C(6) (K),Iodoacetanilide:13C(6) (N-term),iodoTMT (C),iodoTMT (D),iodoTMT (E),iodoTMT (H),iodoTMT (K),iodoTMT6plex (C),iodoTMT6plex (D),iodoTMT6plex (E),iodoTMT6plex (H),iodoTMT6plex (K),IodoU-AMP (F),IodoU-AMP (W),IodoU-AMP (Y),ISD_z+2_ion (N-term),Isopropylphospho (S),Isopropylphospho (T),Isopropylphospho (Y),iTRAQ4plex (H),iTRAQ4plex (K),iTRAQ4plex (N-term),iTRAQ4plex (Protein N-term),iTRAQ4plex (S),iTRAQ4plex (T),iTRAQ4plex (Y),iTRAQ4plex114 (K),iTRAQ4plex114 (N-term),iTRAQ4plex114 (Y),iTRAQ4plex115 (K),iTRAQ4plex115 (N-term),iTRAQ4plex115 (Y),iTRAQ8plex (H),iTRAQ8plex (K),iTRAQ8plex (N-term),iTRAQ8plex (Protein N-term),iTRAQ8plex (S),iTRAQ8plex (T),iTRAQ8plex (Y),iTRAQ8plex:13C(6)15N(2) (K),iTRAQ8plex:13C(6)15N(2) (N-term),iTRAQ8plex:13C(6)15N(2) (Y),Label:13C(1)2H(3) (M),Label:13C(1)2H(3)+Oxidation (M),Label:13C(2)15N(2) (K),Label:13C(3) (A),Label:13C(3)15N(1) (A),Label:13C(4) (M),Label:13C(4)+Oxidation (M),Label:13C(4)15N(1) (D),Label:13C(4)15N(2)+GG (K),Label:13C(5) (P),Label:13C(5)15N(1) (E),Label:13C(5)15N(1) (M),Label:13C(5)15N(1) (P),Label:13C(5)15N(1) (V),Label:13C(6) (I),Label:13C(6) (K),Label:13C(6) (L),Label:13C(6) (R),Label:13C(6)+Acetyl (K),Label:13C(6)+Dimethyl (K),Label:13C(6)+GG (K),Label:13C(6)15N(1) (I),Label:13C(6)15N(1) (L),Label:13C(6)15N(2) (K),Label:13C(6)15N(2)+Acetyl (K),Label:13C(6)15N(2)+Dimethyl (K),Label:13C(6)15N(2)+GG (K),Label:13C(6)15N(4) (R),Label:13C(6)15N(4)+Dimethyl (R),Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R),Label:13C(6)15N(4)+Methyl (R),Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R),Label:13C(9) (F),Label:13C(9) (Y),Label:13C(9)+Phospho (Y),Label:13C(9)15N(1) (F),Label:15N(1) (A),Label:15N(1) (C),Label:15N(1) (D),Label:15N(1) (E),Label:15N(1) (F),Label:15N(1) (G),Label:15N(1) (I),Label:15N(1) (L),Label:15N(1) (M),Label:15N(1) (P),Label:15N(1) (S),Label:15N(1) (T),Label:15N(1) (V),Label:15N(1) (Y),Label:15N(2) (K),Label:15N(2) (N),Label:15N(2) (Q),Label:15N(2) (W),Label:15N(2)2H(9) (K),Label:15N(3) (H),Label:15N(4) (R),Label:18O(1) (C-term),Label:18O(1) (S),Label:18O(1) (T),Label:18O(1) (Y),Label:18O(2) (C-term),Label:2H(10) (L),Label:2H(3) (L),Label:2H(3) (M),Label:2H(3)+Oxidation (M),Label:2H(4) (F),Label:2H(4) (K),Label:2H(4) (Y),Label:2H(4)+Acetyl (K),Label:2H(4)+GG (K),Label:2H(4)13C(1) (R),Label:2H(6)15N(1) (P),Label:2H(7)15N(4) (R),Label:2H(9)13C(6)15N(2) (K),lapachenole (C),Leu->MetOx (L),LG-anhydrolactam (K),LG-anhydrolactam (N-term),LG-anhyropyrrole (K),LG-anhyropyrrole (N-term),LG-Hlactam-K (K),LG-Hlactam-K (Protein N-term),LG-Hlactam-R (R),LG-lactam-K (K),LG-lactam-K (Protein N-term),LG-lactam-R (R),LG-pyrrole (K),LG-pyrrole (N-term),Lipoyl (K),LRGG (K),LRGG+dimethyl (K),LRGG+methyl (K),Lys (N-term),Lys->Ala (K),Lys->Allysine (K),Lys->AminoadipicAcid (K),Lys->Arg (K),Lys->Asn (K),Lys->Asp (K),Lys->CamCys (K),Lys->Cys (K),Lys->Gln (K),Lys->Glu (K),Lys->Gly (K),Lys->His (K),Lys->Met (K),Lys->MetOx (K),Lys->Phe (K),Lys->Pro (K),Lys->Ser (K),Lys->Thr (K),Lys->Trp (K),Lys->Tyr (K),Lys->Val (K),Lys->Xle (K),Lys-loss (Protein C-term K),Lysbiotinhydrazide (K),maleimide (C),maleimide (K),Maleimide-PEO2-Biotin (C),maleimide3 (C),maleimide3 (K),maleimide5 (C),maleimide5 (K),Malonyl (C),Malonyl (S),MDCC (C),Menadione (C),Menadione (K),Menadione-HQ (C),Menadione-HQ (K),MercaptoEthanol (S),MercaptoEthanol (T),Met->Aha (M),Met->Ala (M),Met->Arg (M),Met->Asn (M),Met->Asp (M),Met->Cys (M),Met->Gln (M),Met->Glu (M),Met->Gly (M),Met->His (M),Met->Hpg (M),Met->Hse (C-term M),Met->Hsl (C-term M),Met->Lys (M),Met->Phe (M),Met->Pro (M),Met->Ser (M),Met->Thr (M),Met->Trp (M),Met->Tyr (M),Met->Val (M),Met->Xle (M),Met-loss (Protein N-term M),Met-loss+Acetyl (Protein N-term M),Methyl (C),Methyl (C-term),Methyl (D),Methyl (E),Methyl (H),Methyl (I),Methyl (K),Methyl (L),Methyl (N),Methyl (N-term),Methyl (Protein N-term),Methyl (Q),Methyl (R),Methyl (S),Methyl (T),Methyl+Acetyl:2H(3) (K),Methyl+Deamidated (N),Methyl+Deamidated (Q),Methyl-PEO12-Maleimide (C),Methyl:2H(2) (K),Methyl:2H(2) (N-term),Methyl:2H(2)13C (C),Methyl:2H(2)13C (C-term),Methyl:2H(2)13C (D),Methyl:2H(2)13C (E),Methyl:2H(2)13C (H),Methyl:2H(2)13C (I),Methyl:2H(2)13C (K),Methyl:2H(2)13C (L),Methyl:2H(2)13C (N),Methyl:2H(2)13C (N-term),Methyl:2H(2)13C (Protein N-term),Methyl:2H(2)13C (Q),Methyl:2H(2)13C (R),Methyl:2H(2)13C (S),Methyl:2H(2)13C (T),Methyl:2H(3) (D),Methyl:2H(3) (E),Methyl:2H(3) (K),Methyl:2H(3) (R),Methyl:2H(3) (X),Methyl:2H(3)+Acetyl:2H(3) (K),Methyl:2H(3)13C(1) (K),Methyl:2H(3)13C(1) (N-term),Methyl:2H(3)13C(1) (R),Methylamine (S),Methylamine (T),Methylmalonylation (S),Methylphosphonate (S),Methylphosphonate (T),Methylphosphonate (Y),Methylpyrroline (K),methylsulfonylethyl (C),methylsulfonylethyl (H),methylsulfonylethyl (K),Methylthio (C),Methylthio (D),Methylthio (K),Methylthio (N),Methylthio (N-term),MG-H1 (R),Microcin (Protein C-term),MicrocinC7 (Protein C-term),MM-diphenylpentanone (C),Molybdopterin (C),MolybdopterinGD (C),MolybdopterinGD (D),MolybdopterinGD (U),MolybdopterinGD+Delta:S(-1)Se(1) (C),mTRAQ (H),mTRAQ (K),mTRAQ (N-term),mTRAQ (S),mTRAQ (T),mTRAQ (Y),mTRAQ:13C(3)15N(1) (H),mTRAQ:13C(3)15N(1) (K),mTRAQ:13C(3)15N(1) (N-term),mTRAQ:13C(3)15N(1) (S),mTRAQ:13C(3)15N(1) (T),mTRAQ:13C(3)15N(1) (Y),mTRAQ:13C(6)15N(2) (H),mTRAQ:13C(6)15N(2) (K),mTRAQ:13C(6)15N(2) (N-term),mTRAQ:13C(6)15N(2) (S),mTRAQ:13C(6)15N(2) (T),mTRAQ:13C(6)15N(2) (Y),MTSL (C),MurNAc (A),Myristoleyl (Protein N-term G),Myristoyl (C),Myristoyl (K),Myristoyl (N-term G),Myristoyl+Delta:H(-4) (Protein N-term G),N-dimethylphosphate (S),NA-LNO2 (C),NA-LNO2 (H),NA-OA-NO2 (C),NA-OA-NO2 (H),NBS (W),NBS:13C(6) (W),NDA (K),NDA (N-term),NEIAA (C),NEIAA (Y),NEIAA:2H(5) (C),NEIAA:2H(5) (Y),NEM:2H(5) (C),NEM:2H(5)+H2O (C),NEMsulfur (C),NEMsulfurWater (C),Nethylmaleimide (C),Nethylmaleimide+water (C),Nethylmaleimide+water (K),NeuAc (N),NeuAc (S),NeuAc (T),NeuGc (N),NeuGc (S),NeuGc (T),NHS-fluorescein (K),NHS-LC-Biotin (K),NHS-LC-Biotin (N-term),NIC (K),NIC (N-term),NIPCAM (C),Nitro (W),Nitro (Y),Nitrosyl (C),Nmethylmaleimide (C),Nmethylmaleimide (K),Nmethylmaleimide+water (C),NO_SMX_SEMD (C),NO_SMX_SIMD (C),NO_SMX_SMCT (C),NP40 (N-term),NQIGG (K),O-Dimethylphosphate (S),O-Dimethylphosphate (T),O-Dimethylphosphate (Y),O-Et-N-diMePhospho (S),O-Isopropylmethylphosphonate (S),O-Isopropylmethylphosphonate (T),O-Isopropylmethylphosphonate (Y),O-Methylphosphate (S),O-Methylphosphate (T),O-Methylphosphate (Y),O-pinacolylmethylphosphonate (H),O-pinacolylmethylphosphonate (K),O-pinacolylmethylphosphonate (S),O-pinacolylmethylphosphonate (T),O-pinacolylmethylphosphonate (Y),Octanoyl (C),Octanoyl (S),Octanoyl (T),OxArgBiotin (R),OxArgBiotinRed (R),Oxidation (C),Oxidation (C-term G),Oxidation (D),Oxidation (F),Oxidation (H),Oxidation (K),Oxidation (M),Oxidation (N),Oxidation (P),Oxidation (R),Oxidation (U),Oxidation (W),Oxidation (Y),Oxidation+NEM (C),OxLysBiotin (K),OxLysBiotinRed (K),OxProBiotin (P),OxProBiotinRed (P),Palmitoleyl (C),Palmitoleyl (S),Palmitoleyl (T),Palmitoyl (C),Palmitoyl (K),Palmitoyl (Protein N-term),Palmitoyl (S),Palmitoyl (T),PEITC (C),PEITC (K),PEITC (N-term),Pentose (S),Pentose (T),Pentylamine (Q),PEO-Iodoacetyl-LC-Biotin (C),PET (S),PET (T),Phe->Ala (F),Phe->Arg (F),Phe->Asn (F),Phe->Asp (F),Phe->CamCys (F),Phe->Cys (F),Phe->Gln (F),Phe->Glu (F),Phe->Gly (F),Phe->His (F),Phe->Lys (F),Phe->Met (F),Phe->Pro (F),Phe->Ser (F),Phe->Thr (F),Phe->Trp (F),Phe->Tyr (F),Phe->Val (F),Phe->Xle (F),Phenylisocyanate (N-term),Phenylisocyanate:2H(5) (N-term),phenylsulfonylethyl (C),Phospho (C),Phospho (D),Phospho (H),Phospho (K),Phospho (R),Phospho (S),Phospho (T),Phospho (Y),Phosphoadenosine (H),Phosphoadenosine (K),Phosphoadenosine (T),Phosphoadenosine (Y),Phosphogluconoylation (K),Phosphogluconoylation (N-term),Phosphoguanosine (H),Phosphoguanosine (K),PhosphoHex (S),PhosphoHex (T),PhosphoHex(2) (N),PhosphoHex(2) (S),PhosphoHex(2) (T),PhosphoHexNAc (S),PhosphoHexNAc (T),Phosphopantetheine (S),Phosphopropargyl (S),Phosphopropargyl (T),Phosphopropargyl (Y),phosphoRibosyl (D),phosphoRibosyl (E),phosphoRibosyl (R),PhosphoribosyldephosphoCoA (S),PhosphoUridine (H),PhosphoUridine (Y),Phycocyanobilin (C),Phycoerythrobilin (C),Phytochromobilin (C),Piperidine (K),Piperidine (N-term),Pro->Ala (P),Pro->Arg (P),Pro->Asn (P),Pro->Asp (P),Pro->Cys (P),Pro->Gln (P),Pro->Glu (P),Pro->Gly (P),Pro->His (P),Pro->Lys (P),Pro->Met (P),Pro->Phe (P),Pro->pyro-Glu (P),Pro->Pyrrolidinone (P),Pro->Pyrrolidone (P),Pro->Ser (P),Pro->Thr (P),Pro->Trp (P),Pro->Tyr (P),Pro->Val (P),Pro->Xle (P),probiotinhydrazide (P),Propargylamine (C-term),Propargylamine (D),Propargylamine (E),Propionamide (C),Propionamide (K),Propionamide (N-term),Propionamide:2H(3) (C),Propionyl (K),Propionyl (N-term),Propionyl (Protein N-term),Propionyl (S),Propionyl (T),Propionyl:13C(3) (K),Propionyl:13C(3) (N-term),Propiophenone (C),Propiophenone (H),Propiophenone (K),Propiophenone (R),Propiophenone (S),Propiophenone (T),Propiophenone (W),Propyl (C-term),Propyl (D),Propyl (E),Propyl (K),Propyl (N-term),Propyl (Protein C-term),Propyl:2H(6) (K),Propyl:2H(6) (N-term),PropylNAGthiazoline (C),PS_Hapten (C),PS_Hapten (H),PS_Hapten (K),pupylation (K),Puromycin (C-term),PyMIC (N-term),PyridoxalPhosphate (K),PyridoxalPhosphateH2 (K),Pyridylacetyl (K),Pyridylacetyl (N-term),Pyridylethyl (C),Pyro-carbamidomethyl (N-term C),pyrophospho (S),pyrophospho (T),PyruvicAcidIminyl (K),PyruvicAcidIminyl (Protein N-term C),PyruvicAcidIminyl (Protein N-term V),QAT (C),QAT:2H(3) (C),QEQTGG (K),QQQTGG (K),QTGG (K),Quinone (W),Quinone (Y),Retinylidene (K),RNPXL (N-term K),RNPXL (N-term R),RNPXlink1 (C),RNPXlink2 (F),RNPXlink2 (K),RNPXlink2 (L),RNPXlink3 (C),RNPXlink3 (F),RNPXlink4 (C),RNPXlink5 (F),RNPXlink5 (Y),s-GlcNAc (S),s-GlcNAc (T),Saligenin (H),Saligenin (K),Ser->Ala (S),Ser->Arg (S),Ser->Asn (S),Ser->Asp (S),Ser->Cys (S),Ser->Gln (S),Ser->Glu (S),Ser->Gly (S),Ser->His (S),Ser->LacticAcid (Protein N-term S),Ser->Lys (S),Ser->Met (S),Ser->Phe (S),Ser->Pro (S),Ser->Thr (S),Ser->Trp (S),Ser->Tyr (S),Ser->Val (S),Ser->Xle (S),SMA (K),SMA (N-term),SMCC-maleimide (C),spermidine (Q),spermine (Q),SPITC (K),SPITC (N-term),SPITC:13C(6) (K),SPITC:13C(6) (N-term),Succinyl (K),Succinyl (N-term),Succinyl (Protein N-term),Succinyl:13C(4) (K),Succinyl:13C(4) (N-term),Succinyl:2H(4) (K),Succinyl:2H(4) (N-term),SulfanilicAcid (C-term),SulfanilicAcid (D),SulfanilicAcid (E),SulfanilicAcid:13C(6) (C-term),SulfanilicAcid:13C(6) (D),SulfanilicAcid:13C(6) (E),Sulfide (C),Sulfide (D),Sulfide (W),Sulfo (C),Sulfo (S),Sulfo (T),Sulfo (Y),sulfo+amino (Y),Sulfo-NHS-LC-LC-Biotin (K),Sulfo-NHS-LC-LC-Biotin (N-term),SulfoGMBS (C),SulfurDioxide (C),SUMO2135 (K),SUMO3549 (K),TAMRA-FP (S),TAMRA-FP (Y),Thiadiazole (C),Thiazolidine (N-term C),Thioacyl (K),Thioacyl (X),thioacylPA (K),Thiophos-S-S-biotin (S),Thiophos-S-S-biotin (T),Thiophos-S-S-biotin (Y),Thiophospho (S),Thiophospho (T),Thiophospho (Y),Thr->Ala (T),Thr->Arg (T),Thr->Asn (T),Thr->Asp (T),Thr->Cys (T),Thr->Gln (T),Thr->Glu (T),Thr->Gly (T),Thr->His (T),Thr->Lys (T),Thr->Met (T),Thr->Phe (T),Thr->Pro (T),Thr->Ser (T),Thr->Trp (T),Thr->Tyr (T),Thr->Val (T),Thr->Xle (T),Thrbiotinhydrazide (T),Thyroxine (Y),TMAB (K),TMAB (N-term),TMAB:2H(9) (K),TMAB:2H(9) (N-term),TMPP-Ac (N-term),TMT (H),TMT (K),TMT (N-term),TMT (Protein N-term),TMT (S),TMT (T),TMT2plex (H),TMT2plex (K),TMT2plex (N-term),TMT2plex (Protein N-term),TMT2plex (S),TMT2plex (T),TMT6plex (H),TMT6plex (K),TMT6plex (N-term),TMT6plex (Protein N-term),TMT6plex (S),TMT6plex (T),TNBS (K),TNBS (N-term),trifluoro (L),Triiodo (Y),Triiodothyronine (Y),Trimethyl (K),Trimethyl (Protein N-term A),Trimethyl (R),Trimethyl:13C(3)2H(9) (K),Trimethyl:13C(3)2H(9) (R),Trimethyl:2H(9) (K),Trimethyl:2H(9) (R),Trioxidation (C),Trioxidation (W),Trioxidation (Y),Tripalmitate (Protein N-term C),Tris (N),Triton (C-term),Triton (N-term),Trp->Ala (W),Trp->Arg (W),Trp->Asn (W),Trp->Asp (W),Trp->Cys (W),Trp->Gln (W),Trp->Glu (W),Trp->Gly (W),Trp->His (W),Trp->Hydroxykynurenin (W),Trp->Kynurenin (W),Trp->Lys (W),Trp->Met (W),Trp->Oxolactone (W),Trp->Phe (W),Trp->Pro (W),Trp->Ser (W),Trp->Thr (W),Trp->Tyr (W),Trp->Val (W),Trp->Xle (W),Tween20 (N-term),Tween80 (C-term),Tyr->Ala (Y),Tyr->Arg (Y),Tyr->Asn (Y),Tyr->Asp (Y),Tyr->Cys (Y),Tyr->Dha (Y),Tyr->Gln (Y),Tyr->Glu (Y),Tyr->Gly (Y),Tyr->His (Y),Tyr->Lys (Y),Tyr->Met (Y),Tyr->Phe (Y),Tyr->Pro (Y),Tyr->Ser (Y),Tyr->Thr (Y),Tyr->Trp (Y),Tyr->Val (Y),Tyr->Xle (Y),Ub-amide (C),Ub-Br2 (C),Ub-fluorescein (C),Ub-VME (C),UgiJoullie (D),UgiJoullie (E),UgiJoullieProGly (D),UgiJoullieProGly (E),UgiJoullieProGlyProGly (D),UgiJoullieProGlyProGly (E),Val->Ala (V),Val->Arg (V),Val->Asn (V),Val->Asp (V),Val->Cys (V),Val->Gln (V),Val->Glu (V),Val->Gly (V),Val->His (V),Val->Lys (V),Val->Met (V),Val->Phe (V),Val->Pro (V),Val->Ser (V),Val->Thr (V),Val->Trp (V),Val->Tyr (V),Val->Xle (V),VFQQQTGG (K),VIEVYQEQTGG (K),Withaferin (C),Xle->Ala (I),Xle->Ala (L),Xle->Arg (I),Xle->Arg (L),Xle->Asn (I),Xle->Asn (L),Xle->Asp (I),Xle->Asp (L),Xle->Cys (I),Xle->Cys (L),Xle->Gln (I),Xle->Gln (L),Xle->Glu (I),Xle->Glu (L),Xle->Gly (I),Xle->Gly (L),Xle->His (I),Xle->His (L),Xle->Lys (I),Xle->Lys (L),Xle->Met (I),Xle->Met (L),Xle->Phe (I),Xle->Phe (L),Xle->Pro (I),Xle->Pro (L),Xle->Ser (I),Xle->Ser (L),Xle->Thr (I),Xle->Thr (L),Xle->Trp (I),Xle->Trp (L),Xle->Tyr (I),Xle->Tyr (L),Xle->Val (I),Xle->Val (L),Xlink:B10621 (C),Xlink:DMP (K),Xlink:DMP (Protein N-term),Xlink:DMP-de (K),Xlink:DMP-de (Protein N-term),Xlink:DMP-s (K),Xlink:DMP-s (Protein N-term),Xlink:DSS (K),Xlink:DSS (Protein N-term),Xlink:DSS-NH2 (K),Xlink:DSS-NH2 (Protein N-term),Xlink:DST (K),Xlink:DST (Protein N-term),Xlink:DTSSP (K),Xlink:DTSSP (Protein N-term),Xlink:EGS (K),Xlink:EGS (Protein N-term),Xlink:EGScleaved (K),Xlink:EGScleaved (Protein N-term),Xlink:SMCC (C),Xlink:SSD (K),ZGB (K),ZGB (N-term)
+++blacklist Filtering by blacklisting (only peptides/proteins NOT present in a given set can pass)
proteins Filename of a FASTA file containing protein sequences.
All peptides that are referencing a protein in this file are removed.
All proteins whose accessions are present in this file are removed.input file*.fasta
protein_accessions[] All peptides that reference at least one of the provided protein accession are removed.
Only proteins not in the provided list are retained.
peptides Peptides with the same sequence and modification assignment as any peptide in this file are filtered out. Use with 'blacklist:ignore_modifications' to only compare by sequence.
input file*.idXML
ignore_modifications false Compare blacklisted peptides by sequence only.true,false
modifications[] Remove all peptides with sequences that contain (any of) the selected modification(s)15N-oxobutanoic (N-term C),15N-oxobutanoic (Protein N-term S),15N-oxobutanoic (Protein N-term T),2-dimethylsuccinyl (C),2-monomethylsuccinyl (C),2-nitrobenzyl (Y),2-succinyl (C),2HPG (R),3-deoxyglucosone (R),3-phosphoglyceryl (K),3sulfo (N-term),4-ONE (C),4-ONE (H),4-ONE (K),4-ONE+Delta:H(-2)O(-1) (C),4-ONE+Delta:H(-2)O(-1) (H),4-ONE+Delta:H(-2)O(-1) (K),4AcAllylGal (C),a-type-ion (C-term),AccQTag (K),AccQTag (N-term),Acetyl (C),Acetyl (H),Acetyl (K),Acetyl (N-term),Acetyl (Protein N-term),Acetyl (S),Acetyl (T),Acetyl (Y),Acetyl:13C(2) (K),Acetyl:13C(2) (Protein N-term),Acetyl:2H(3) (H),Acetyl:2H(3) (K),Acetyl:2H(3) (N-term),Acetyl:2H(3) (Protein N-term),Acetyl:2H(3) (S),Acetyl:2H(3) (T),Acetyl:2H(3) (Y),Acetyldeoxyhypusine (K),Acetylhypusine (K),ADP-Ribosyl (C),ADP-Ribosyl (D),ADP-Ribosyl (E),ADP-Ribosyl (K),ADP-Ribosyl (N),ADP-Ribosyl (R),ADP-Ribosyl (S),ADP-Ribosyl (T),AEBS (H),AEBS (K),AEBS (Protein N-term),AEBS (S),AEBS (Y),AEC-MAEC (S),AEC-MAEC (T),AEC-MAEC:2H(4) (S),AEC-MAEC:2H(4) (T),AHA-Alkyne (M),AHA-Alkyne-KDDDD (M),AHA-SS (M),AHA-SS_CAM (M),Ahx2+Hsl (C-term),Ala->Arg (A),Ala->Asn (A),Ala->Asp (A),Ala->Cys (A),Ala->Gln (A),Ala->Glu (A),Ala->Gly (A),Ala->His (A),Ala->Lys (A),Ala->Met (A),Ala->Phe (A),Ala->Pro (A),Ala->Ser (A),Ala->Thr (A),Ala->Trp (A),Ala->Tyr (A),Ala->Val (A),Ala->Xle (A),Amidated (C-term),Amidated (Protein C-term),Amidine (K),Amidine (N-term),Amidino (C),Amino (Y),Ammonia-loss (N),Ammonia-loss (N-term C),Ammonia-loss (Protein N-term S),Ammonia-loss (Protein N-term T),Ammonium (C-term),Ammonium (D),Ammonium (E),AMTzHexNAc2 (N),AMTzHexNAc2 (S),AMTzHexNAc2 (T),Archaeol (C),Arg (N-term),Arg->Ala (R),Arg->Asn (R),Arg->Asp (R),Arg->Cys (R),Arg->Gln (R),Arg->Glu (R),Arg->GluSA (R),Arg->Gly (R),Arg->His (R),Arg->Lys (R),Arg->Met (R),Arg->Npo (R),Arg->Orn (R),Arg->Phe (R),Arg->Pro (R),Arg->Ser (R),Arg->Thr (R),Arg->Trp (R),Arg->Tyr (R),Arg->Val (R),Arg->Xle (R),Arg-loss (C-term R),Arg2PG (R),Argbiotinhydrazide (R),AROD (C),Asn->Ala (N),Asn->Arg (N),Asn->Asp (N),Asn->Cys (N),Asn->Gln (N),Asn->Glu (N),Asn->Gly (N),Asn->His (N),Asn->Lys (N),Asn->Met (N),Asn->Phe (N),Asn->Pro (N),Asn->Ser (N),Asn->Thr (N),Asn->Trp (N),Asn->Tyr (N),Asn->Val (N),Asn->Xle (N),Asp->Ala (D),Asp->Arg (D),Asp->Asn (D),Asp->Cys (D),Asp->Gln (D),Asp->Glu (D),Asp->Gly (D),Asp->His (D),Asp->Lys (D),Asp->Met (D),Asp->Phe (D),Asp->Pro (D),Asp->Ser (D),Asp->Thr (D),Asp->Trp (D),Asp->Tyr (D),Asp->Val (D),Asp->Xle (D),Atto495Maleimide (C),azole (C),azole (S),Bacillosamine (N),BADGE (C),BDMAPP (H),BDMAPP (K),BDMAPP (Protein N-term),BDMAPP (W),BDMAPP (Y),Benzoyl (K),Benzoyl (N-term),benzylguanidine (K),beta FNA (C),beta FNA (K),BHT (C),BHT (H),BHT (K),BHTOH (C),BHTOH (H),BHTOH (K),Biotin (K),Biotin (N-term),Biotin-HPDP (C),Biotin-PEG-PRA (M),Biotin-PEO-Amine (D),Biotin-PEO-Amine (E),Biotin-PEO-Amine (Protein C-term),Biotin-phenacyl (C),Biotin-phenacyl (H),Biotin-phenacyl (S),Biotin-tyramide (Y),Biotin:Cayman-10013 (C),Biotin:Cayman-10141 (C),Biotin:Invitrogen-M1602 (C),Biotin:Sigma-B1267 (C),Biotin:Thermo-21325 (K),Biotin:Thermo-21330 (K),Biotin:Thermo-21330 (N-term),Biotin:Thermo-21345 (Q),Biotin:Thermo-21360 (X),Biotin:Thermo-21901+2H2O (C),Biotin:Thermo-21901+H2O (C),Biotin:Thermo-21911 (C),Biotin:Thermo-33033 (X),Biotin:Thermo-33033-H (X),Biotin:Thermo-88310 (K),Biotin:Thermo-88317 (S),Biotin:Thermo-88317 (Y),biotinAcrolein298 (C),biotinAcrolein298 (H),biotinAcrolein298 (K),biotinAcrolein298 (Protein N-term),BisANS (K),bisANS-sulfonates (K),bisANS-sulfonates (S),bisANS-sulfonates (T),BITC (C),BITC (K),BITC (N-term),BMOE (C),BMP-piperidinol (C),BMP-piperidinol (M),Bodipy (C),Brij35 (N-term),Brij58 (N-term),Bromo (F),Bromo (H),Bromo (W),Bromo (Y),Bromobimane (C),Butyryl (K),C8-QAT (K),C8-QAT (N-term),CAF (N-term),CAMthiopropanoyl (K),CAMthiopropanoyl (Protein N-term),Can-FP-biotin (S),Can-FP-biotin (T),Can-FP-biotin (Y),Carbamidomethyl (C),Carbamidomethyl (D),Carbamidomethyl (E),Carbamidomethyl (H),Carbamidomethyl (K),Carbamidomethyl (N-term),Carbamidomethyl (S),Carbamidomethyl (T),Carbamidomethyl (U),Carbamidomethyl (Y),CarbamidomethylDTT (C),Carbamyl (C),Carbamyl (K),Carbamyl (M),Carbamyl (N-term),Carbamyl (Protein N-term),Carbamyl (R),Carbamyl (S),Carbamyl (T),Carbamyl (Y),Carbofuran (S),Carboxy (D),Carboxy (E),Carboxy (K),Carboxy (Protein N-term M),Carboxy (W),Carboxy->Thiocarboxy (Protein C-term G),Carboxyethyl (H),Carboxyethyl (K),Carboxyethylpyrrole (K),Carboxymethyl (C),Carboxymethyl (K),Carboxymethyl (N-term),Carboxymethyl (U),Carboxymethyl (W),Carboxymethyl:13C(2) (C),CarboxymethylDMAP (N-term),CarboxymethylDTT (C),Cation:Ag (C-term),Cation:Ag (D),Cation:Ag (E),Cation:Ca[II] (C-term),Cation:Ca[II] (D),Cation:Ca[II] (E),Cation:Cu[I] (C-term),Cation:Cu[I] (D),Cation:Cu[I] (E),Cation:Cu[I] (H),Cation:Fe[II] (C-term),Cation:Fe[II] (D),Cation:Fe[II] (E),Cation:K (C-term),Cation:K (D),Cation:K (E),Cation:Li (C-term),Cation:Li (D),Cation:Li (E),Cation:Mg[II] (C-term),Cation:Mg[II] (D),Cation:Mg[II] (E),Cation:Na (C-term),Cation:Na (D),Cation:Na (E),Cation:Ni[II] (C-term),Cation:Ni[II] (D),Cation:Ni[II] (E),Cation:Zn[II] (C-term),Cation:Zn[II] (D),Cation:Zn[II] (E),Cation:Zn[II] (H),cGMP (C),cGMP (S),cGMP+RMP-loss (C),cGMP+RMP-loss (S),CHDH (D),Chlorination (Y),Chlorpyrifos (S),Chlorpyrifos (T),Chlorpyrifos (Y),Cholesterol (Protein C-term),CLIP_TRAQ_2 (K),CLIP_TRAQ_2 (N-term),CLIP_TRAQ_2 (Y),CLIP_TRAQ_3 (K),CLIP_TRAQ_3 (N-term),CLIP_TRAQ_3 (Y),CLIP_TRAQ_4 (K),CLIP_TRAQ_4 (N-term),CLIP_TRAQ_4 (Y),CoenzymeA (C),Cresylphosphate (H),Cresylphosphate (K),Cresylphosphate (R),Cresylphosphate (S),Cresylphosphate (T),Cresylphosphate (Y),CresylSaligeninPhosphate (H),CresylSaligeninPhosphate (K),CresylSaligeninPhosphate (R),CresylSaligeninPhosphate (S),CresylSaligeninPhosphate (T),CresylSaligeninPhosphate (Y),Crotonaldehyde (C),Crotonaldehyde (H),Crotonaldehyde (K),Crotonyl (K),CuSMo (C),CUSTOM0 (A),CUSTOM0 (C),CUSTOM0 (C-term),CUSTOM0 (D),CUSTOM0 (E),CUSTOM0 (F),CUSTOM0 (G),CUSTOM0 (H),CUSTOM0 (I),CUSTOM0 (K),CUSTOM0 (L),CUSTOM0 (M),CUSTOM0 (N),CUSTOM0 (N-term),CUSTOM0 (P),CUSTOM0 (Q),CUSTOM0 (R),CUSTOM0 (S),CUSTOM0 (T),CUSTOM0 (V),CUSTOM0 (W),CUSTOM0 (Y),CUSTOM1 (A),CUSTOM1 (C),CUSTOM1 (C-term),CUSTOM1 (D),CUSTOM1 (E),CUSTOM1 (F),CUSTOM1 (G),CUSTOM1 (H),CUSTOM1 (I),CUSTOM1 (K),CUSTOM1 (L),CUSTOM1 (M),CUSTOM1 (N),CUSTOM1 (N-term),CUSTOM1 (P),CUSTOM1 (Q),CUSTOM1 (R),CUSTOM1 (S),CUSTOM1 (T),CUSTOM1 (V),CUSTOM1 (W),CUSTOM1 (Y),CUSTOM2 (A),CUSTOM2 (C),CUSTOM2 (C-term),CUSTOM2 (D),CUSTOM2 (E),CUSTOM2 (F),CUSTOM2 (G),CUSTOM2 (H),CUSTOM2 (I),CUSTOM2 (K),CUSTOM2 (L),CUSTOM2 (M),CUSTOM2 (N),CUSTOM2 (N-term),CUSTOM2 (P),CUSTOM2 (Q),CUSTOM2 (R),CUSTOM2 (S),CUSTOM2 (T),CUSTOM2 (V),CUSTOM2 (W),CUSTOM2 (Y),CUSTOM3 (A),CUSTOM3 (C),CUSTOM3 (C-term),CUSTOM3 (D),CUSTOM3 (E),CUSTOM3 (F),CUSTOM3 (G),CUSTOM3 (H),CUSTOM3 (I),CUSTOM3 (K),CUSTOM3 (L),CUSTOM3 (M),CUSTOM3 (N),CUSTOM3 (N-term),CUSTOM3 (P),CUSTOM3 (Q),CUSTOM3 (R),CUSTOM3 (S),CUSTOM3 (T),CUSTOM3 (V),CUSTOM3 (W),CUSTOM3 (Y),CUSTOM4 (A),CUSTOM4 (C),CUSTOM4 (C-term),CUSTOM4 (D),CUSTOM4 (E),CUSTOM4 (F),CUSTOM4 (G),CUSTOM4 (H),CUSTOM4 (I),CUSTOM4 (K),CUSTOM4 (L),CUSTOM4 (M),CUSTOM4 (N),CUSTOM4 (N-term),CUSTOM4 (P),CUSTOM4 (Q),CUSTOM4 (R),CUSTOM4 (S),CUSTOM4 (T),CUSTOM4 (V),CUSTOM4 (W),CUSTOM4 (Y),CUSTOM5 (A),CUSTOM5 (C),CUSTOM5 (C-term),CUSTOM5 (D),CUSTOM5 (E),CUSTOM5 (F),CUSTOM5 (G),CUSTOM5 (H),CUSTOM5 (I),CUSTOM5 (K),CUSTOM5 (L),CUSTOM5 (M),CUSTOM5 (N),CUSTOM5 (N-term),CUSTOM5 (P),CUSTOM5 (Q),CUSTOM5 (R),CUSTOM5 (S),CUSTOM5 (T),CUSTOM5 (V),CUSTOM5 (W),CUSTOM5 (Y),CUSTOM6 (A),CUSTOM6 (C),CUSTOM6 (C-term),CUSTOM6 (D),CUSTOM6 (E),CUSTOM6 (F),CUSTOM6 (G),CUSTOM6 (H),CUSTOM6 (I),CUSTOM6 (K),CUSTOM6 (L),CUSTOM6 (M),CUSTOM6 (N),CUSTOM6 (N-term),CUSTOM6 (P),CUSTOM6 (Q),CUSTOM6 (R),CUSTOM6 (S),CUSTOM6 (T),CUSTOM6 (V),CUSTOM6 (W),CUSTOM6 (Y),CUSTOM7 (A),CUSTOM7 (C),CUSTOM7 (C-term),CUSTOM7 (D),CUSTOM7 (E),CUSTOM7 (F),CUSTOM7 (G),CUSTOM7 (H),CUSTOM7 (I),CUSTOM7 (K),CUSTOM7 (L),CUSTOM7 (M),CUSTOM7 (N),CUSTOM7 (N-term),CUSTOM7 (P),CUSTOM7 (Q),CUSTOM7 (R),CUSTOM7 (S),CUSTOM7 (T),CUSTOM7 (V),CUSTOM7 (W),CUSTOM7 (Y),CUSTOM8 (A),CUSTOM8 (C),CUSTOM8 (C-term),CUSTOM8 (D),CUSTOM8 (E),CUSTOM8 (F),CUSTOM8 (G),CUSTOM8 (H),CUSTOM8 (I),CUSTOM8 (K),CUSTOM8 (L),CUSTOM8 (M),CUSTOM8 (N),CUSTOM8 (N-term),CUSTOM8 (P),CUSTOM8 (Q),CUSTOM8 (R),CUSTOM8 (S),CUSTOM8 (T),CUSTOM8 (V),CUSTOM8 (W),CUSTOM8 (Y),CUSTOM9 (A),CUSTOM9 (C),CUSTOM9 (C-term),CUSTOM9 (D),CUSTOM9 (E),CUSTOM9 (F),CUSTOM9 (G),CUSTOM9 (H),CUSTOM9 (I),CUSTOM9 (K),CUSTOM9 (L),CUSTOM9 (M),CUSTOM9 (N),CUSTOM9 (N-term),CUSTOM9 (P),CUSTOM9 (Q),CUSTOM9 (R),CUSTOM9 (S),CUSTOM9 (T),CUSTOM9 (V),CUSTOM9 (W),CUSTOM9 (Y),Cy3-maleimide (C),Cy3b-maleimide (C),Cyano (C),CyDye-Cy3 (C),CyDye-Cy5 (C),Cys->Ala (C),Cys->Arg (C),Cys->Asn (C),Cys->Asp (C),Cys->CamSec (C),Cys->Dha (C),Cys->ethylaminoAla (C),Cys->Gln (C),Cys->Glu (C),Cys->Gly (C),Cys->His (C),Cys->Lys (C),Cys->Met (C),Cys->methylaminoAla (C),Cys->Oxoalanine (C),Cys->Phe (C),Cys->Pro (C),Cys->PyruvicAcid (Protein N-term C),Cys->SecNEM (C),Cys->SecNEM:2H(5) (C),Cys->Ser (C),Cys->Thr (C),Cys->Trp (C),Cys->Tyr (C),Cys->Val (C),Cys->Xle (C),Cysteinyl (C),cysTMT (C),cysTMT6plex (C),Cytopiloyne (C),Cytopiloyne (K),Cytopiloyne (N-term),Cytopiloyne (P),Cytopiloyne (R),Cytopiloyne (S),Cytopiloyne (Y),Cytopiloyne+water (C),Cytopiloyne+water (K),Cytopiloyne+water (N-term),Cytopiloyne+water (R),Cytopiloyne+water (S),Cytopiloyne+water (T),Cytopiloyne+water (Y),DAET (S),DAET (T),Dansyl (K),Dansyl (N-term),Dap-DSP (A),Dap-DSP (E),Dap-DSP (K),Deamidated (N),Deamidated (Protein N-term F),Deamidated (Q),Deamidated (R),Deamidated:18O(1) (N),Deamidated:18O(1) (Q),Decanoyl (S),Decanoyl (T),DEDGFLYMVYASQETFG (K),Dehydrated (D),Dehydrated (N-term C),Dehydrated (Protein C-term N),Dehydrated (Protein C-term Q),Dehydrated (S),Dehydrated (T),Dehydrated (Y),Dehydro (C),Delta:H(1)N(-1)18O(1) (N),Delta:H(2)C(2) (H),Delta:H(2)C(2) (K),Delta:H(2)C(2) (N-term),Delta:H(2)C(2) (Protein N-term),Delta:H(2)C(3) (K),Delta:H(2)C(3)O(1) (K),Delta:H(2)C(3)O(1) (R),Delta:H(2)C(5) (K),Delta:H(4)C(2) (H),Delta:H(4)C(2) (K),Delta:H(4)C(2) (N-term),Delta:H(4)C(2)O(-1)S(1) (S),Delta:H(4)C(3) (H),Delta:H(4)C(3) (K),Delta:H(4)C(3) (Protein N-term),Delta:H(4)C(3)O(1) (C),Delta:H(4)C(3)O(1) (H),Delta:H(4)C(3)O(1) (K),Delta:H(4)C(6) (K),Delta:H(5)C(2) (P),Delta:H(6)C(3)O(1) (C),Delta:H(6)C(3)O(1) (H),Delta:H(6)C(3)O(1) (K),Delta:H(6)C(3)O(1) (Protein N-term),Delta:H(6)C(6)O(1) (K),Delta:H(8)C(6)O(1) (K),Delta:H(8)C(6)O(1) (Protein N-term),Delta:H(8)C(6)O(2) (K),Delta:Hg(1) (C),Delta:S(-1)Se(1) (C),Delta:S(-1)Se(1) (M),Delta:Se(1) (C),Deoxy (D),Deoxy (S),Deoxy (T),Deoxyhypusine (K),Deoxyhypusine (Q),DeStreak (C),Dethiomethyl (M),DFDNB (K),DFDNB (N),DFDNB (Q),DFDNB (R),dHex (N),dHex (S),dHex (T),dHex(1)Hex(1) (S),dHex(1)Hex(1) (T),dHex(1)Hex(1)HexA(1)HexNAc(3) (S),dHex(1)Hex(1)HexA(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(1)Kdn(1) (S),dHex(1)Hex(1)HexNAc(1)Kdn(1) (T),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(2)Kdn(1) (S),dHex(1)Hex(1)HexNAc(2)Kdn(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(1)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3) (S),dHex(1)Hex(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(1)HexNAc(4) (S),dHex(1)Hex(1)HexNAc(4) (T),dHex(1)Hex(2) (S),dHex(1)Hex(2) (T),dHex(1)Hex(2)HexA(1) (S),dHex(1)Hex(2)HexA(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(2) (S),dHex(1)Hex(2)HexA(1)HexNAc(2) (T),dHex(1)Hex(2)HexNAc(1) (S),dHex(1)Hex(2)HexNAc(1) (T),dHex(1)Hex(2)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (T),dHex(1)Hex(2)HexNAc(2)Pent(1) (N),dHex(1)Hex(2)HexNAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3) (N),dHex(1)Hex(2)HexNAc(3) (S),dHex(1)Hex(2)HexNAc(3) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)Sulf(1) (T),dHex(1)Hex(2)HexNAc(4) (S),dHex(1)Hex(2)HexNAc(4) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (T),dHex(1)Hex(3) (S),dHex(1)Hex(3) (T),dHex(1)Hex(3)HexA(1)HexNAc(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(2) (S),dHex(1)Hex(3)HexA(1)HexNAc(2) (T),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexA(2)HexNAc(2) 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(S),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(3)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexNAc(2) (N),dHex(2)Hex(3)HexNAc(2) (S),dHex(2)Hex(3)HexNAc(2) (T),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(3)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexNAc(3) (N),dHex(2)Hex(3)HexNAc(3) (S),dHex(2)Hex(3)HexNAc(3) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(2)Hex(3)HexNAc(3)NeuGc(1) (S),dHex(2)Hex(3)HexNAc(3)NeuGc(1) (T),dHex(2)Hex(3)HexNAc(3)Pent(1) (N),dHex(2)Hex(3)HexNAc(3)Pent(2) (N),dHex(2)Hex(3)HexNAc(4) (N),dHex(2)Hex(3)HexNAc(4) (S),dHex(2)Hex(3)HexNAc(4) (T),dHex(2)Hex(3)HexNAc(4)Pent(1) (N),dHex(2)Hex(3)HexNAc(4)Pent(2) 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(T),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(3)Hex(2)HexNAc(2) (S),dHex(3)Hex(2)HexNAc(2) (T),dHex(3)Hex(2)HexNAc(2)Kdn(1) (S),dHex(3)Hex(2)HexNAc(2)Kdn(1) (T),dHex(3)Hex(2)HexNAc(3) (S),dHex(3)Hex(2)HexNAc(3) (T),dHex(3)Hex(2)HexNAc(3)Kdn(1) (S),dHex(3)Hex(2)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexNAc(4) (S),dHex(3)Hex(2)HexNAc(4) (T),dHex(3)Hex(3)HexNAc(3) (S),dHex(3)Hex(3)HexNAc(3) (T),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(3)Hex(3)HexNAc(3)Pent(1) (N),dHex(3)Hex(3)HexNAc(4) (N),dHex(3)Hex(3)HexNAc(4)Pent(1) (N),dHex(3)Hex(4)HexNAc(4) (N),dHex(3)Hex(4)HexNAc(4) (S),dHex(3)Hex(4)HexNAc(4) (T),dHex(3)Hex(4)HexNAc(4)Sulf(1) (N),dHex(3)HexNAc(3)Kdn(1) (S),dHex(3)HexNAc(3)Kdn(1) (T),dHex(4)Hex(1)HexNAc(1)Kdn(2) (S),dHex(4)Hex(1)HexNAc(1)Kdn(2) (T),dHex(4)Hex(1)HexNAc(2)Kdn(1) (S),dHex(4)Hex(1)HexNAc(2)Kdn(1) (T),dHex(4)Hex(1)HexNAc(3)Kdn(1) (S),dHex(4)Hex(1)HexNAc(3)Kdn(1) (T),dHex(4)Hex(2)HexNAc(2)Kdn(1) (S),dHex(4)Hex(2)HexNAc(2)Kdn(1) (T),dHex(4)Hex(2)HexNAc(3) (S),dHex(4)Hex(2)HexNAc(3) (T),dHex(4)Hex(3)HexNAc(3) (S),dHex(4)Hex(3)HexNAc(3) (T),dHex(4)HexNAc(3)Kdn(1) (S),dHex(4)HexNAc(3)Kdn(1) (T),DHP (C),Diacylglycerol (C),DiART6plex (K),DiART6plex (N-term),DiART6plex (Protein N-term),DiART6plex (Y),DiART6plex115 (K),DiART6plex115 (N-term),DiART6plex115 (Protein N-term),DiART6plex115 (Y),DiART6plex116/119 (K),DiART6plex116/119 (N-term),DiART6plex116/119 (Protein N-term),DiART6plex116/119 (Y),DiART6plex117 (K),DiART6plex117 (N-term),DiART6plex117 (Protein N-term),DiART6plex117 (Y),DiART6plex118 (K),DiART6plex118 (N-term),DiART6plex118 (Protein N-term),DiART6plex118 (Y),Dibromo (Y),Dicarbamidomethyl (C),Dicarbamidomethyl (H),Dicarbamidomethyl (K),Dicarbamidomethyl (N-term),Dicarbamidomethyl (R),dichlorination (C),dichlorination (Y),Didehydro (C-term K),Didehydro (S),Didehydro (T),Didehydro (Y),Didehydroretinylidene (K),Diethyl (K),Diethyl (N-term),Diethylphosphate (C),Diethylphosphate (H),Diethylphosphate (K),Diethylphosphate (N-term),Diethylphosphate (S),Diethylphosphate (T),Diethylphosphate (Y),Difuran (Y),Dihydroxyimidazolidine (R),Diiodo (H),Diiodo (Y),Diironsubcluster (C),Diisopropylphosphate (K),Diisopropylphosphate (N-term),Diisopropylphosphate (S),Diisopropylphosphate (T),Diisopropylphosphate (Y),DiLeu4plex (K),DiLeu4plex (N-term),DiLeu4plex (Y),DiLeu4plex115 (K),DiLeu4plex115 (N-term),DiLeu4plex115 (Y),DiLeu4plex117 (K),DiLeu4plex117 (N-term),DiLeu4plex117 (Y),DiLeu4plex118 (K),DiLeu4plex118 (N-term),DiLeu4plex118 (Y),Dimethyl (K),Dimethyl (N),Dimethyl (N-term),Dimethyl (Protein N-term P),Dimethyl (Protein N-term),Dimethyl (R),Dimethyl:2H(2)13C (K),Dimethyl:2H(2)13C (N),Dimethyl:2H(2)13C (N-term),Dimethyl:2H(2)13C (Protein N-term P),Dimethyl:2H(2)13C (R),Dimethyl:2H(4) (K),Dimethyl:2H(4) (N-term),Dimethyl:2H(4) (Protein N-term),Dimethyl:2H(4) (R),Dimethyl:2H(4)13C(2) (K),Dimethyl:2H(4)13C(2) (N-term),Dimethyl:2H(4)13C(2) (Protein N-term),Dimethyl:2H(4)13C(2) (R),Dimethyl:2H(6) (K),Dimethyl:2H(6) (N-term),Dimethyl:2H(6) (R),Dimethyl:2H(6)13C(2) (K),Dimethyl:2H(6)13C(2) (N-term),Dimethyl:2H(6)13C(2) (Protein N-term),Dimethyl:2H(6)13C(2) (R),DimethylamineGMBS (C),DimethylArsino (C),DimethylpyrroleAdduct (K),Dioxidation (C),Dioxidation (F),Dioxidation (K),Dioxidation (M),Dioxidation (P),Dioxidation (R),Dioxidation (U),Dioxidation (W),Dioxidation (Y),Diphthamide (H),Dipyridyl (C),Dipyrrolylmethanemethyl (C),DMPO (C),DMPO (H),DMPO (Y),DNCB_hapten (C),DNCB_hapten (H),DNCB_hapten (K),DNCB_hapten (Y),dNIC (K),dNIC (N-term),DNPS (C),DNPS (W),DTBP (K),DTBP (N),DTBP (Protein N-term),DTBP (Q),DTBP (R),DTT_C (C),DTT_C:2H(6) (C),DTT_ST (S),DTT_ST (T),DTT_ST:2H(6) (S),DTT_ST:2H(6) (T),DyLight-maleimide (C),EDEDTIDVFQQQTGG (K),EDT-iodoacetyl-PEO-biotin (S),EDT-iodoacetyl-PEO-biotin (T),EDT-maleimide-PEO-biotin (S),EDT-maleimide-PEO-biotin (T),EEEDVIEVYQEQTGG (K),EGCG1 (C),EGCG2 (C),EHD-diphenylpentanone (C),EHD-diphenylpentanone (M),EQAT (C),EQAT:2H(5) (C),EQIGG (K),ESP (K),ESP (N-term),ESP:2H(10) (K),ESP:2H(10) (N-term),Ethanedithiol (S),Ethanedithiol (T),Ethanolamine (C),Ethanolamine (C-term),Ethanolamine (D),Ethanolamine (E),Ethanolyl (C),Ethanolyl (K),Ethanolyl (R),Ethoxyformyl (H),Ethyl (C-term),Ethyl (D),Ethyl (E),Ethyl (K),Ethyl (N-term),Ethyl (Protein N-term),Ethyl+Deamidated (N),Ethyl+Deamidated (Q),ethylamino (S),ethylamino (T),Ethylphosphate (K),Ethylphosphate (N-term),Ethylphosphate (S),Ethylphosphate (T),Ethylphosphate (Y),ethylsulfonylethyl (C),ethylsulfonylethyl (H),ethylsulfonylethyl (K),ExacTagAmine (K),ExacTagThiol (C),FAD (C),FAD (H),FAD (Y),Farnesyl (C),Fluorescein (C),Fluorescein-tyramine (Y),Fluoro (A),Fluoro (F),Fluoro (W),Fluoro (Y),FMN (S),FMN (T),FMNC (C),FMNH (C),FMNH (H),FNEM (C),Formyl (K),Formyl (N-term),Formyl (Protein N-term),Formyl (S),Formyl (T),FormylMet (Protein N-term),FP-Biotin (K),FP-Biotin (S),FP-Biotin (T),FP-Biotin (Y),FTC (C),FTC (K),FTC (P),FTC (R),FTC (S),Furan (Y),G-H1 (R),Galactosyl (K),Galactosyl (N-term),GEE (Q),GeranylGeranyl (C),GG (C),GG (K),GG (S),GG (T),GGQ (K),GIST-Quat (K),GIST-Quat (N-term),GIST-Quat:2H(3) (K),GIST-Quat:2H(3) (N-term),GIST-Quat:2H(6) (K),GIST-Quat:2H(6) (N-term),GIST-Quat:2H(9) (K),GIST-Quat:2H(9) (N-term),Gln->Ala (Q),Gln->Arg (Q),Gln->Asn (Q),Gln->Asp (Q),Gln->Cys (Q),Gln->Glu (Q),Gln->Gly (Q),Gln->His (Q),Gln->Lys (Q),Gln->Met (Q),Gln->Phe (Q),Gln->Pro (Q),Gln->pyro-Glu (N-term Q),Gln->Ser (Q),Gln->Thr (Q),Gln->Trp (Q),Gln->Tyr (Q),Gln->Val (Q),Gln->Xle (Q),Glu (E),Glu (Protein C-term),Glu->Ala (E),Glu->Arg (E),Glu->Asn (E),Glu->Asp (E),Glu->Cys (E),Glu->Gln (E),Glu->Gly (E),Glu->His (E),Glu->Lys (E),Glu->Met (E),Glu->Phe (E),Glu->Pro (E),Glu->pyro-Glu (N-term E),Glu->pyro-Glu+Methyl (N-term E),Glu->pyro-Glu+Methyl (N-term E),Glu->pyro-Glu+Methyl:2H(2)13C (N-term E),Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E),Glu->Ser (E),Glu->Thr (E),Glu->Trp (E),Glu->Tyr (E),Glu->Val (E),Glu->Xle (E),glucosone (R),Glucosylgalactosyl (K),Glucuronyl (Protein N-term),Glucuronyl (S),Glucuronyl (T),GluGlu (E),GluGlu (Protein C-term),GluGluGlu (E),GluGluGlu (Protein C-term),GluGluGluGlu (E),GluGluGluGlu (Protein C-term),Glutathione (C),Gly (K),Gly (S),Gly (T),Gly->Ala (G),Gly->Arg (G),Gly->Asn (G),Gly->Asp (G),Gly->Cys (G),Gly->Gln (G),Gly->Glu (G),Gly->His (G),Gly->Lys (G),Gly->Met (G),Gly->Phe (G),Gly->Pro (G),Gly->Ser (G),Gly->Thr (G),Gly->Trp (G),Gly->Tyr (G),Gly->Val (G),Gly->Xle (G),Gly-loss+Amide (C-term G),Glycerophospho (S),GlycerylPE (E),glycidamide (K),glycidamide (N-term),Glycosyl (P),GPIanchor (Protein C-term),Guanidinyl (K),Guanidinyl (N-term),HCysteinyl (C),HCysThiolactone (K),Heme (C),Heme (H),Hep (K),Hep (N),Hep (Q),Hep (R),Hep (S),Hep (T),Hex (C),Hex (K),Hex (N),Hex (N-term),Hex (R),Hex (S),Hex (T),Hex (W),Hex (Y),Hex(1)HexA(1) (S),Hex(1)HexA(1) (T),Hex(1)HexA(1)HexNAc(1) (S),Hex(1)HexA(1)HexNAc(1) (T),Hex(1)HexA(1)HexNAc(2) (S),Hex(1)HexA(1)HexNAc(2) (T),Hex(1)HexNAc(1) (N),Hex(1)HexNAc(1) (S),Hex(1)HexNAc(1) (T),Hex(1)HexNAc(1)dHex(1) (N),Hex(1)HexNAc(1)dHex(1) (S),Hex(1)HexNAc(1)dHex(1) (T),Hex(1)HexNAc(1)dHex(1)Me(1) (S),Hex(1)HexNAc(1)dHex(1)Me(1) (T),Hex(1)HexNAc(1)dHex(1)Me(2) (S),Hex(1)HexNAc(1)dHex(1)Me(2) (T),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(1) (N),Hex(1)HexNAc(1)NeuAc(1) (S),Hex(1)HexNAc(1)NeuAc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(2) (N),Hex(1)HexNAc(1)NeuAc(2) (S),Hex(1)HexNAc(1)NeuAc(2) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T),Hex(1)HexNAc(1)NeuAc(3) (S),Hex(1)HexNAc(1)NeuAc(3) (T),Hex(1)HexNAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuGc(2) (S),Hex(1)HexNAc(1)NeuGc(2) (T),Hex(1)HexNAc(1)NeuGc(3) (S),Hex(1)HexNAc(1)NeuGc(3) (T),Hex(1)HexNAc(1)NeuGc(4) (S),Hex(1)HexNAc(1)NeuGc(4) (T),Hex(1)HexNAc(1)NeuGc(5) (S),Hex(1)HexNAc(1)NeuGc(5) (T),Hex(1)HexNAc(1)Phos(1) (S),Hex(1)HexNAc(1)Phos(1) (T),Hex(1)HexNAc(1)Sulf(1) (S),Hex(1)HexNAc(1)Sulf(1) (T),Hex(1)HexNAc(2) (N),Hex(1)HexNAc(2) (S),Hex(1)HexNAc(2) (T),Hex(1)HexNAc(2)dHex(1) (N),Hex(1)HexNAc(2)dHex(1) (S),Hex(1)HexNAc(2)dHex(1) (T),Hex(1)HexNAc(2)dHex(1)Pent(1) (N),Hex(1)HexNAc(2)dHex(2) (N),Hex(1)HexNAc(2)dHex(2) (S),Hex(1)HexNAc(2)dHex(2) (T),Hex(1)HexNAc(2)NeuAc(1) (S),Hex(1)HexNAc(2)NeuAc(1) (T),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(2)NeuAc(2) (S),Hex(1)HexNAc(2)NeuAc(2) (T),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(1)HexNAc(2)NeuGc(1) (S),Hex(1)HexNAc(2)NeuGc(1) (T),Hex(1)HexNAc(2)Pent(1) (N),Hex(1)HexNAc(2)Sulf(1) (S),Hex(1)HexNAc(2)Sulf(1) (T),Hex(1)HexNAc(3) (S),Hex(1)HexNAc(3) (T),Hex(1)HexNAc(3)NeuAc(1) (S),Hex(1)HexNAc(3)NeuAc(1) (T),Hex(1)HexNAc(3)NeuAc(2) (S),Hex(1)HexNAc(3)NeuAc(2) (T),Hex(1)HexNAc(3)NeuGc(1) (S),Hex(1)HexNAc(3)NeuGc(1) (T),Hex(1)HexNAc(3)Sulf(1) (S),Hex(1)HexNAc(3)Sulf(1) (T),Hex(1)NeuAc(1) (S),Hex(1)NeuAc(1) (T),Hex(1)NeuAc(1)Pent(1) (S),Hex(1)NeuAc(1)Pent(1) (T),Hex(1)NeuGc(1) (S),Hex(1)NeuGc(1) (T),Hex(1)Pent(1) (S),Hex(1)Pent(1) (T),Hex(1)Pent(2) (S),Hex(1)Pent(2) (T),Hex(10)Phos(3) (S),Hex(10)Phos(3) (T),Hex(2) (K),Hex(2) (R),Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (T),Hex(2)HexA(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)Pent(1)Sulf(1) (T),Hex(2)HexNAc(1) (S),Hex(2)HexNAc(1) (T),Hex(2)HexNAc(1)Me(1) (S),Hex(2)HexNAc(1)Me(1) (T),Hex(2)HexNAc(1)NeuGc(1) (S),Hex(2)HexNAc(1)NeuGc(1) (T),Hex(2)HexNAc(1)NeuGc(2) (S),Hex(2)HexNAc(1)NeuGc(2) (T),Hex(2)HexNAc(1)NeuGc(3) (S),Hex(2)HexNAc(1)NeuGc(3) (T),Hex(2)HexNAc(1)NeuGc(4) (S),Hex(2)HexNAc(1)NeuGc(4) (T),Hex(2)HexNAc(1)Sulf(1) (S),Hex(2)HexNAc(1)Sulf(1) (T),Hex(2)HexNAc(2) (N),Hex(2)HexNAc(2) (S),Hex(2)HexNAc(2) (T),Hex(2)HexNAc(2)dHex(1) (N),Hex(2)HexNAc(2)dHex(1) (S),Hex(2)HexNAc(2)dHex(1) (T),Hex(2)HexNAc(2)NeuAc(1) (N),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(2)NeuAc(2) (S),Hex(2)HexNAc(2)NeuAc(2) (T),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(2)HexNAc(2)NeuGc(1) (S),Hex(2)HexNAc(2)NeuGc(1) (T),Hex(2)HexNAc(2)Pent(1) (N),Hex(2)HexNAc(2)Sulf(1) (S),Hex(2)HexNAc(2)Sulf(1) (T),Hex(2)HexNAc(3) (S),Hex(2)HexNAc(3) (T),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (S),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (T),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(3)NeuAc(2) (S),Hex(2)HexNAc(3)NeuAc(2) (T),Hex(2)HexNAc(3)NeuAc(3) (S),Hex(2)HexNAc(3)NeuAc(3) (T),Hex(2)HexNAc(3)NeuGc(1) (S),Hex(2)HexNAc(3)NeuGc(1) (T),Hex(2)HexNAc(3)NeuGc(2) (S),Hex(2)HexNAc(3)NeuGc(2) (T),Hex(2)HexNAc(3)NeuGc(3) (S),Hex(2)HexNAc(3)NeuGc(3) (T),Hex(2)HexNAc(3)Sulf(1) (S),Hex(2)HexNAc(3)Sulf(1) (T),Hex(2)HexNAc(4) (S),Hex(2)HexNAc(4) (T),Hex(2)HexNAc(4)NeuAc(1) (S),Hex(2)HexNAc(4)NeuAc(1) (T),Hex(2)HexNAc(5) (S),Hex(2)HexNAc(5) (T),Hex(2)NeuAc(1) (S),Hex(2)NeuAc(1) (T),Hex(3) (N),Hex(3) (S),Hex(3) (T),Hex(3)HexNAc(1) (S),Hex(3)HexNAc(1) (T),Hex(3)HexNAc(1)Me(1) (S),Hex(3)HexNAc(1)Me(1) (T),Hex(3)HexNAc(1)Pent(1) (N),Hex(3)HexNAc(2) (N),Hex(3)HexNAc(2) (S),Hex(3)HexNAc(2) (T),Hex(3)HexNAc(2)NeuAc(1) (N),Hex(3)HexNAc(2)NeuAc(2) (S),Hex(3)HexNAc(2)NeuAc(2) (T),Hex(3)HexNAc(2)Pent(1) (N),Hex(3)HexNAc(2)Phos(1) (N),Hex(3)HexNAc(3) (N),Hex(3)HexNAc(3) (S),Hex(3)HexNAc(3) (T),Hex(3)HexNAc(3)NeuAc(1) (S),Hex(3)HexNAc(3)NeuAc(1) (T),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(3)HexNAc(3)NeuAc(2) (S),Hex(3)HexNAc(3)NeuAc(2) (T),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (T),Hex(3)HexNAc(3)NeuGc(1) (S),Hex(3)HexNAc(3)NeuGc(1) (T),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (T),Hex(3)HexNAc(3)Pent(1) (N),Hex(3)HexNAc(3)Sulf(1) (S),Hex(3)HexNAc(3)Sulf(1) (T),Hex(3)HexNAc(4) (N),Hex(3)HexNAc(4) (S),Hex(3)HexNAc(4) (T),Hex(3)HexNAc(4)NeuAc(1) (N),Hex(3)HexNAc(4)Pent(1) (N),Hex(3)HexNAc(4)Sulf(1) (N),Hex(3)HexNAc(5) (N),Hex(3)HexNAc(5) (S),Hex(3)HexNAc(5) (T),Hex(3)HexNAc(5)Sulf(1) (N),Hex(3)HexNAc(6) (N),Hex(3)HexNAc(6) (S),Hex(3)HexNAc(6) (T),Hex(3)HexNAc(6)NeuAc(1) (N),Hex(3)HexNAc(6)Sulf(1) (N),Hex(3)HexNAc(6)Sulf(2) (N),Hex(3)HexNAc(7) (N),Hex(3)HexNAc(7)Sulf(1) (N),Hex(3)Phos(1) (S),Hex(3)Phos(1) (T),Hex(4) (S),Hex(4) (T),Hex(4)HexNAc(1) (S),Hex(4)HexNAc(1) (T),Hex(4)HexNAc(2) (N),Hex(4)HexNAc(2)NeuAc(1) (N),Hex(4)HexNAc(2)Pent(1) (N),Hex(4)HexNAc(3) (N),Hex(4)HexNAc(3) (S),Hex(4)HexNAc(3) (T),Hex(4)HexNAc(3)NeuAc(1) (N),Hex(4)HexNAc(3)NeuAc(1) (S),Hex(4)HexNAc(3)NeuAc(1) (T),Hex(4)HexNAc(3)NeuAc(2) (N),Hex(4)HexNAc(3)NeuGc(1) (N),Hex(4)HexNAc(3)Pent(1) (N),Hex(4)HexNAc(4) (N),Hex(4)HexNAc(4) (S),Hex(4)HexNAc(4) (T),Hex(4)HexNAc(4)Me(2)Pent(1) (N),Hex(4)HexNAc(4)NeuAc(1) (N),Hex(4)HexNAc(4)NeuAc(1) (S),Hex(4)HexNAc(4)NeuAc(1) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (T),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (T),Hex(4)HexNAc(4)Pent(1) (N),Hex(4)HexNAc(4)Sulf(1) (N),Hex(4)HexNAc(4)Sulf(2) (S),Hex(4)HexNAc(4)Sulf(2) (T),Hex(4)HexNAc(5) (N),Hex(4)HexNAc(5)NeuAc(1) (N),Hex(4)HexNAc(5)Sulf(1) (N),Hex(4)HexNAc(6) (N),Hex(4)Phos(1) (S),Hex(4)Phos(1) (T),Hex(5) (S),Hex(5) (T),Hex(5)HexNAc(1) (S),Hex(5)HexNAc(1) (T),Hex(5)HexNAc(2) (N),Hex(5)HexNAc(2)Phos(1) (N),Hex(5)HexNAc(3) (N),Hex(5)HexNAc(3)Pent(1) (N),Hex(5)HexNAc(4) (N),Hex(5)HexNAc(4) (S),Hex(5)HexNAc(4) (T),Hex(5)HexNAc(4)Me(2)Pent(1) (N),Hex(5)HexNAc(4)NeuAc(1) (N),Hex(5)HexNAc(4)NeuAc(1)Sulf(1) (N),Hex(5)HexNAc(4)NeuAc(2) (N),Hex(5)HexNAc(4)NeuGc(1) (N),Hex(5)HexNAc(4)Sulf(1) (N),Hex(5)HexNAc(5) (N),Hex(5)HexNAc(5) (S),Hex(5)HexNAc(5) (T),Hex(5)Phos(1) (S),Hex(5)Phos(1) (T),Hex(5)Phos(3) (S),Hex(5)Phos(3) (T),Hex(6)HexNAc(2) (N),Hex(6)HexNAc(2)Phos(1) (N),Hex(6)HexNAc(3) (N),Hex(6)HexNAc(3)Phos(1) (N),Hex(6)HexNAc(4) (N),Hex(6)HexNAc(4) (S),Hex(6)HexNAc(4) (T),Hex(6)HexNAc(4)Me(3) (N),Hex(6)HexNAc(4)Me(3)Pent(1) (N),Hex(6)HexNAc(5) (N),Hex(6)Phos(1) (S),Hex(6)Phos(1) (T),Hex(6)Phos(3) (S),Hex(6)Phos(3) (T),Hex(7)HexNAc(1) (N),Hex(7)HexNAc(2) (N),Hex(7)HexNAc(2)Phos(1) (N),Hex(7)HexNAc(2)Phos(2) (N),Hex(7)HexNAc(3) (N),Hex(7)HexNAc(3)Phos(1) (N),Hex(7)HexNAc(4) (N),Hex(7)Phos(3) (S),Hex(7)Phos(3) (T),Hex(8)HexNAc(1) (N),Hex(8)HexNAc(2) (N),Hex(8)Phos(3) (S),Hex(8)Phos(3) (T),Hex(9)HexNAc(2) (N),Hex(9)Phos(3) (S),Hex(9)Phos(3) (T),HexN (K),HexN (N),HexN (S),HexN (T),HexN (W),HexNAc (N),HexNAc (S),HexNAc (T),HexNAc(1)dHex(1) (N),HexNAc(1)dHex(1) (S),HexNAc(1)dHex(1) (T),HexNAc(1)dHex(2) (N),HexNAc(1)Kdn(2) (S),HexNAc(1)Kdn(2) (T),HexNAc(1)NeuAc(1) (S),HexNAc(1)NeuAc(1) (T),HexNAc(1)NeuGc(1) (S),HexNAc(1)NeuGc(1) (T),HexNAc(1)NeuGc(2) (S),HexNAc(1)NeuGc(2) (T),HexNAc(2) (N),HexNAc(2) (S),HexNAc(2) (T),HexNAc(2)dHex(1) (N),HexNAc(2)dHex(2) (N),HexNAc(2)NeuAc(1) (S),HexNAc(2)NeuAc(1) (T),HexNAc(2)NeuAc(1)Sulf(1) (S),HexNAc(2)NeuAc(1)Sulf(1) (T),HexNAc(2)NeuGc(1) (S),HexNAc(2)NeuGc(1) (T),HexNAc(3) (S),HexNAc(3) (T),HexNAc(3)Sulf(1) (S),HexNAc(3)Sulf(1) (T),HexNAc(4) (S),HexNAc(4) (T),HexNAc(5) (S),HexNAc(5) (T),His->Ala (H),His->Arg (H),His->Asn (H),His->Asp (H),His->Cys (H),His->Gln (H),His->Glu (H),His->Gly (H),His->Lys (H),His->Met (H),His->Phe (H),His->Pro (H),His->Ser (H),His->Thr (H),His->Trp (H),His->Tyr (H),His->Val (H),His->Xle (H),HMVK (C),HN2_mustard (C),HN2_mustard (H),HN2_mustard (K),HN3_mustard (C),HN3_mustard (H),HN3_mustard (K),HNE (A),HNE (C),HNE (H),HNE (K),HNE (L),HNE+Delta:H(2) (C),HNE+Delta:H(2) (H),HNE+Delta:H(2) (K),HNE-BAHAH (C),HNE-BAHAH (H),HNE-BAHAH (K),HNE-Delta:H(2)O (C),HNE-Delta:H(2)O (H),HNE-Delta:H(2)O (K),Homocysteic_acid (M),HPG (R),Hydroxamic_acid (D),Hydroxamic_acid (E),Hydroxycinnamyl (C),Hydroxyfarnesyl (C),Hydroxyheme (E),Hydroxymethyl (N),HydroxymethylOP (K),Hydroxytrimethyl (K),Hypusine (K),IASD (C),IBTP (C),ICAT-C (C),ICAT-C:13C(9) (C),ICAT-D (C),ICAT-D:2H(8) (C),ICAT-G (C),ICAT-G:2H(8) (C),ICAT-H (C),ICAT-H:13C(6) (C),ICDID (C),ICDID:2H(6) (C),ICPL (K),ICPL (N-term),ICPL (Protein N-term),ICPL:13C(6) (K),ICPL:13C(6) (N-term),ICPL:13C(6) (Protein N-term),ICPL:13C(6)2H(4) (K),ICPL:13C(6)2H(4) (N-term),ICPL:13C(6)2H(4) (Protein N-term),ICPL:2H(4) (K),ICPL:2H(4) (N-term),ICPL:2H(4) (Protein N-term),IDEnT (C),IED-Biotin (C),IGBP (C),IGBP:13C(2) (C),IMEHex(2)NeuAc(1) (K),IMID (K),IMID:2H(4) (K),Iminobiotin (K),Iminobiotin (N-term),Iodo (H),Iodo (Y),Iodoacetanilide (C),Iodoacetanilide (K),Iodoacetanilide (N-term),Iodoacetanilide:13C(6) (C),Iodoacetanilide:13C(6) (K),Iodoacetanilide:13C(6) (N-term),iodoTMT (C),iodoTMT (D),iodoTMT (E),iodoTMT (H),iodoTMT (K),iodoTMT6plex (C),iodoTMT6plex (D),iodoTMT6plex (E),iodoTMT6plex (H),iodoTMT6plex (K),IodoU-AMP (F),IodoU-AMP (W),IodoU-AMP (Y),ISD_z+2_ion (N-term),Isopropylphospho (S),Isopropylphospho (T),Isopropylphospho (Y),iTRAQ4plex (H),iTRAQ4plex (K),iTRAQ4plex (N-term),iTRAQ4plex (Protein N-term),iTRAQ4plex (S),iTRAQ4plex (T),iTRAQ4plex (Y),iTRAQ4plex114 (K),iTRAQ4plex114 (N-term),iTRAQ4plex114 (Y),iTRAQ4plex115 (K),iTRAQ4plex115 (N-term),iTRAQ4plex115 (Y),iTRAQ8plex (H),iTRAQ8plex (K),iTRAQ8plex (N-term),iTRAQ8plex (Protein N-term),iTRAQ8plex (S),iTRAQ8plex (T),iTRAQ8plex (Y),iTRAQ8plex:13C(6)15N(2) (K),iTRAQ8plex:13C(6)15N(2) (N-term),iTRAQ8plex:13C(6)15N(2) (Y),Label:13C(1)2H(3) (M),Label:13C(1)2H(3)+Oxidation (M),Label:13C(2)15N(2) (K),Label:13C(3) (A),Label:13C(3)15N(1) (A),Label:13C(4) (M),Label:13C(4)+Oxidation (M),Label:13C(4)15N(1) (D),Label:13C(4)15N(2)+GG (K),Label:13C(5) (P),Label:13C(5)15N(1) (E),Label:13C(5)15N(1) (M),Label:13C(5)15N(1) (P),Label:13C(5)15N(1) (V),Label:13C(6) (I),Label:13C(6) (K),Label:13C(6) (L),Label:13C(6) (R),Label:13C(6)+Acetyl (K),Label:13C(6)+Dimethyl (K),Label:13C(6)+GG (K),Label:13C(6)15N(1) (I),Label:13C(6)15N(1) (L),Label:13C(6)15N(2) (K),Label:13C(6)15N(2)+Acetyl (K),Label:13C(6)15N(2)+Dimethyl (K),Label:13C(6)15N(2)+GG (K),Label:13C(6)15N(4) (R),Label:13C(6)15N(4)+Dimethyl (R),Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R),Label:13C(6)15N(4)+Methyl (R),Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R),Label:13C(9) (F),Label:13C(9) (Y),Label:13C(9)+Phospho (Y),Label:13C(9)15N(1) (F),Label:15N(1) (A),Label:15N(1) (C),Label:15N(1) (D),Label:15N(1) (E),Label:15N(1) (F),Label:15N(1) (G),Label:15N(1) (I),Label:15N(1) (L),Label:15N(1) (M),Label:15N(1) (P),Label:15N(1) (S),Label:15N(1) (T),Label:15N(1) (V),Label:15N(1) (Y),Label:15N(2) (K),Label:15N(2) (N),Label:15N(2) (Q),Label:15N(2) (W),Label:15N(2)2H(9) (K),Label:15N(3) (H),Label:15N(4) (R),Label:18O(1) (C-term),Label:18O(1) (S),Label:18O(1) (T),Label:18O(1) (Y),Label:18O(2) (C-term),Label:2H(10) (L),Label:2H(3) (L),Label:2H(3) (M),Label:2H(3)+Oxidation (M),Label:2H(4) (F),Label:2H(4) (K),Label:2H(4) (Y),Label:2H(4)+Acetyl (K),Label:2H(4)+GG (K),Label:2H(4)13C(1) (R),Label:2H(6)15N(1) (P),Label:2H(7)15N(4) (R),Label:2H(9)13C(6)15N(2) (K),lapachenole (C),Leu->MetOx (L),LG-anhydrolactam (K),LG-anhydrolactam (N-term),LG-anhyropyrrole (K),LG-anhyropyrrole (N-term),LG-Hlactam-K (K),LG-Hlactam-K (Protein N-term),LG-Hlactam-R (R),LG-lactam-K (K),LG-lactam-K (Protein N-term),LG-lactam-R (R),LG-pyrrole (K),LG-pyrrole (N-term),Lipoyl (K),LRGG (K),LRGG+dimethyl (K),LRGG+methyl (K),Lys (N-term),Lys->Ala (K),Lys->Allysine (K),Lys->AminoadipicAcid (K),Lys->Arg (K),Lys->Asn (K),Lys->Asp (K),Lys->CamCys (K),Lys->Cys (K),Lys->Gln (K),Lys->Glu (K),Lys->Gly (K),Lys->His (K),Lys->Met (K),Lys->MetOx (K),Lys->Phe (K),Lys->Pro (K),Lys->Ser (K),Lys->Thr (K),Lys->Trp (K),Lys->Tyr (K),Lys->Val (K),Lys->Xle (K),Lys-loss (Protein C-term K),Lysbiotinhydrazide (K),maleimide (C),maleimide (K),Maleimide-PEO2-Biotin (C),maleimide3 (C),maleimide3 (K),maleimide5 (C),maleimide5 (K),Malonyl (C),Malonyl (S),MDCC (C),Menadione (C),Menadione (K),Menadione-HQ (C),Menadione-HQ (K),MercaptoEthanol (S),MercaptoEthanol (T),Met->Aha (M),Met->Ala (M),Met->Arg (M),Met->Asn (M),Met->Asp (M),Met->Cys (M),Met->Gln (M),Met->Glu (M),Met->Gly (M),Met->His (M),Met->Hpg (M),Met->Hse (C-term M),Met->Hsl (C-term M),Met->Lys (M),Met->Phe (M),Met->Pro (M),Met->Ser (M),Met->Thr (M),Met->Trp (M),Met->Tyr (M),Met->Val (M),Met->Xle (M),Met-loss (Protein N-term M),Met-loss+Acetyl (Protein N-term M),Methyl (C),Methyl (C-term),Methyl (D),Methyl (E),Methyl (H),Methyl (I),Methyl (K),Methyl (L),Methyl (N),Methyl (N-term),Methyl (Protein N-term),Methyl (Q),Methyl (R),Methyl (S),Methyl (T),Methyl+Acetyl:2H(3) (K),Methyl+Deamidated (N),Methyl+Deamidated (Q),Methyl-PEO12-Maleimide (C),Methyl:2H(2) (K),Methyl:2H(2) (N-term),Methyl:2H(2)13C (C),Methyl:2H(2)13C (C-term),Methyl:2H(2)13C (D),Methyl:2H(2)13C (E),Methyl:2H(2)13C (H),Methyl:2H(2)13C (I),Methyl:2H(2)13C (K),Methyl:2H(2)13C (L),Methyl:2H(2)13C (N),Methyl:2H(2)13C (N-term),Methyl:2H(2)13C (Protein N-term),Methyl:2H(2)13C (Q),Methyl:2H(2)13C (R),Methyl:2H(2)13C (S),Methyl:2H(2)13C (T),Methyl:2H(3) (D),Methyl:2H(3) (E),Methyl:2H(3) (K),Methyl:2H(3) (R),Methyl:2H(3) (X),Methyl:2H(3)+Acetyl:2H(3) (K),Methyl:2H(3)13C(1) (K),Methyl:2H(3)13C(1) (N-term),Methyl:2H(3)13C(1) (R),Methylamine (S),Methylamine (T),Methylmalonylation (S),Methylphosphonate (S),Methylphosphonate (T),Methylphosphonate (Y),Methylpyrroline (K),methylsulfonylethyl (C),methylsulfonylethyl (H),methylsulfonylethyl (K),Methylthio (C),Methylthio (D),Methylthio (K),Methylthio (N),Methylthio (N-term),MG-H1 (R),Microcin (Protein C-term),MicrocinC7 (Protein C-term),MM-diphenylpentanone (C),Molybdopterin (C),MolybdopterinGD (C),MolybdopterinGD (D),MolybdopterinGD (U),MolybdopterinGD+Delta:S(-1)Se(1) (C),mTRAQ (H),mTRAQ (K),mTRAQ (N-term),mTRAQ (S),mTRAQ (T),mTRAQ (Y),mTRAQ:13C(3)15N(1) (H),mTRAQ:13C(3)15N(1) (K),mTRAQ:13C(3)15N(1) (N-term),mTRAQ:13C(3)15N(1) (S),mTRAQ:13C(3)15N(1) (T),mTRAQ:13C(3)15N(1) (Y),mTRAQ:13C(6)15N(2) (H),mTRAQ:13C(6)15N(2) (K),mTRAQ:13C(6)15N(2) (N-term),mTRAQ:13C(6)15N(2) (S),mTRAQ:13C(6)15N(2) (T),mTRAQ:13C(6)15N(2) (Y),MTSL (C),MurNAc (A),Myristoleyl (Protein N-term G),Myristoyl (C),Myristoyl (K),Myristoyl (N-term G),Myristoyl+Delta:H(-4) (Protein N-term G),N-dimethylphosphate (S),NA-LNO2 (C),NA-LNO2 (H),NA-OA-NO2 (C),NA-OA-NO2 (H),NBS (W),NBS:13C(6) (W),NDA (K),NDA (N-term),NEIAA (C),NEIAA (Y),NEIAA:2H(5) (C),NEIAA:2H(5) (Y),NEM:2H(5) (C),NEM:2H(5)+H2O (C),NEMsulfur (C),NEMsulfurWater (C),Nethylmaleimide (C),Nethylmaleimide+water (C),Nethylmaleimide+water (K),NeuAc (N),NeuAc (S),NeuAc (T),NeuGc (N),NeuGc (S),NeuGc (T),NHS-fluorescein (K),NHS-LC-Biotin (K),NHS-LC-Biotin (N-term),NIC (K),NIC (N-term),NIPCAM (C),Nitro (W),Nitro (Y),Nitrosyl (C),Nmethylmaleimide (C),Nmethylmaleimide (K),Nmethylmaleimide+water (C),NO_SMX_SEMD (C),NO_SMX_SIMD (C),NO_SMX_SMCT (C),NP40 (N-term),NQIGG (K),O-Dimethylphosphate (S),O-Dimethylphosphate (T),O-Dimethylphosphate (Y),O-Et-N-diMePhospho (S),O-Isopropylmethylphosphonate (S),O-Isopropylmethylphosphonate (T),O-Isopropylmethylphosphonate (Y),O-Methylphosphate (S),O-Methylphosphate (T),O-Methylphosphate (Y),O-pinacolylmethylphosphonate (H),O-pinacolylmethylphosphonate (K),O-pinacolylmethylphosphonate (S),O-pinacolylmethylphosphonate (T),O-pinacolylmethylphosphonate (Y),Octanoyl (C),Octanoyl (S),Octanoyl (T),OxArgBiotin (R),OxArgBiotinRed (R),Oxidation (C),Oxidation (C-term G),Oxidation (D),Oxidation (F),Oxidation (H),Oxidation (K),Oxidation (M),Oxidation (N),Oxidation (P),Oxidation (R),Oxidation (U),Oxidation (W),Oxidation (Y),Oxidation+NEM (C),OxLysBiotin (K),OxLysBiotinRed (K),OxProBiotin (P),OxProBiotinRed (P),Palmitoleyl (C),Palmitoleyl (S),Palmitoleyl (T),Palmitoyl (C),Palmitoyl (K),Palmitoyl (Protein N-term),Palmitoyl (S),Palmitoyl (T),PEITC (C),PEITC (K),PEITC (N-term),Pentose (S),Pentose (T),Pentylamine (Q),PEO-Iodoacetyl-LC-Biotin (C),PET (S),PET (T),Phe->Ala (F),Phe->Arg (F),Phe->Asn (F),Phe->Asp (F),Phe->CamCys (F),Phe->Cys (F),Phe->Gln (F),Phe->Glu (F),Phe->Gly (F),Phe->His (F),Phe->Lys (F),Phe->Met (F),Phe->Pro (F),Phe->Ser (F),Phe->Thr (F),Phe->Trp (F),Phe->Tyr (F),Phe->Val (F),Phe->Xle (F),Phenylisocyanate (N-term),Phenylisocyanate:2H(5) (N-term),phenylsulfonylethyl (C),Phospho (C),Phospho (D),Phospho (H),Phospho (K),Phospho (R),Phospho (S),Phospho (T),Phospho (Y),Phosphoadenosine (H),Phosphoadenosine (K),Phosphoadenosine (T),Phosphoadenosine (Y),Phosphogluconoylation (K),Phosphogluconoylation (N-term),Phosphoguanosine (H),Phosphoguanosine (K),PhosphoHex (S),PhosphoHex (T),PhosphoHex(2) (N),PhosphoHex(2) (S),PhosphoHex(2) (T),PhosphoHexNAc (S),PhosphoHexNAc (T),Phosphopantetheine (S),Phosphopropargyl (S),Phosphopropargyl (T),Phosphopropargyl (Y),phosphoRibosyl (D),phosphoRibosyl (E),phosphoRibosyl (R),PhosphoribosyldephosphoCoA (S),PhosphoUridine (H),PhosphoUridine (Y),Phycocyanobilin (C),Phycoerythrobilin (C),Phytochromobilin (C),Piperidine (K),Piperidine (N-term),Pro->Ala (P),Pro->Arg (P),Pro->Asn (P),Pro->Asp (P),Pro->Cys (P),Pro->Gln (P),Pro->Glu (P),Pro->Gly (P),Pro->His (P),Pro->Lys (P),Pro->Met (P),Pro->Phe (P),Pro->pyro-Glu (P),Pro->Pyrrolidinone (P),Pro->Pyrrolidone (P),Pro->Ser (P),Pro->Thr (P),Pro->Trp (P),Pro->Tyr (P),Pro->Val (P),Pro->Xle (P),probiotinhydrazide (P),Propargylamine (C-term),Propargylamine (D),Propargylamine (E),Propionamide (C),Propionamide (K),Propionamide (N-term),Propionamide:2H(3) (C),Propionyl (K),Propionyl (N-term),Propionyl (Protein N-term),Propionyl (S),Propionyl (T),Propionyl:13C(3) (K),Propionyl:13C(3) (N-term),Propiophenone (C),Propiophenone (H),Propiophenone (K),Propiophenone (R),Propiophenone (S),Propiophenone (T),Propiophenone (W),Propyl (C-term),Propyl (D),Propyl (E),Propyl (K),Propyl (N-term),Propyl (Protein C-term),Propyl:2H(6) (K),Propyl:2H(6) (N-term),PropylNAGthiazoline (C),PS_Hapten (C),PS_Hapten (H),PS_Hapten (K),pupylation (K),Puromycin (C-term),PyMIC (N-term),PyridoxalPhosphate (K),PyridoxalPhosphateH2 (K),Pyridylacetyl (K),Pyridylacetyl (N-term),Pyridylethyl (C),Pyro-carbamidomethyl (N-term C),pyrophospho (S),pyrophospho (T),PyruvicAcidIminyl (K),PyruvicAcidIminyl (Protein N-term C),PyruvicAcidIminyl (Protein N-term V),QAT (C),QAT:2H(3) (C),QEQTGG (K),QQQTGG (K),QTGG (K),Quinone (W),Quinone (Y),Retinylidene (K),RNPXL (N-term K),RNPXL (N-term R),RNPXlink1 (C),RNPXlink2 (F),RNPXlink2 (K),RNPXlink2 (L),RNPXlink3 (C),RNPXlink3 (F),RNPXlink4 (C),RNPXlink5 (F),RNPXlink5 (Y),s-GlcNAc (S),s-GlcNAc (T),Saligenin (H),Saligenin (K),Ser->Ala (S),Ser->Arg (S),Ser->Asn (S),Ser->Asp (S),Ser->Cys (S),Ser->Gln (S),Ser->Glu (S),Ser->Gly (S),Ser->His (S),Ser->LacticAcid (Protein N-term S),Ser->Lys (S),Ser->Met (S),Ser->Phe (S),Ser->Pro (S),Ser->Thr (S),Ser->Trp (S),Ser->Tyr (S),Ser->Val (S),Ser->Xle (S),SMA (K),SMA (N-term),SMCC-maleimide (C),spermidine (Q),spermine (Q),SPITC (K),SPITC (N-term),SPITC:13C(6) (K),SPITC:13C(6) (N-term),Succinyl (K),Succinyl (N-term),Succinyl (Protein N-term),Succinyl:13C(4) (K),Succinyl:13C(4) (N-term),Succinyl:2H(4) (K),Succinyl:2H(4) (N-term),SulfanilicAcid (C-term),SulfanilicAcid (D),SulfanilicAcid (E),SulfanilicAcid:13C(6) (C-term),SulfanilicAcid:13C(6) (D),SulfanilicAcid:13C(6) (E),Sulfide (C),Sulfide (D),Sulfide (W),Sulfo (C),Sulfo (S),Sulfo (T),Sulfo (Y),sulfo+amino (Y),Sulfo-NHS-LC-LC-Biotin (K),Sulfo-NHS-LC-LC-Biotin (N-term),SulfoGMBS (C),SulfurDioxide (C),SUMO2135 (K),SUMO3549 (K),TAMRA-FP (S),TAMRA-FP (Y),Thiadiazole (C),Thiazolidine (N-term C),Thioacyl (K),Thioacyl (X),thioacylPA (K),Thiophos-S-S-biotin (S),Thiophos-S-S-biotin (T),Thiophos-S-S-biotin (Y),Thiophospho (S),Thiophospho (T),Thiophospho (Y),Thr->Ala (T),Thr->Arg (T),Thr->Asn (T),Thr->Asp (T),Thr->Cys (T),Thr->Gln (T),Thr->Glu (T),Thr->Gly (T),Thr->His (T),Thr->Lys (T),Thr->Met (T),Thr->Phe (T),Thr->Pro (T),Thr->Ser (T),Thr->Trp (T),Thr->Tyr (T),Thr->Val (T),Thr->Xle (T),Thrbiotinhydrazide (T),Thyroxine (Y),TMAB (K),TMAB (N-term),TMAB:2H(9) (K),TMAB:2H(9) (N-term),TMPP-Ac (N-term),TMT (H),TMT (K),TMT (N-term),TMT (Protein N-term),TMT (S),TMT (T),TMT2plex (H),TMT2plex (K),TMT2plex (N-term),TMT2plex (Protein N-term),TMT2plex (S),TMT2plex (T),TMT6plex (H),TMT6plex (K),TMT6plex (N-term),TMT6plex (Protein N-term),TMT6plex (S),TMT6plex (T),TNBS (K),TNBS (N-term),trifluoro (L),Triiodo (Y),Triiodothyronine (Y),Trimethyl (K),Trimethyl (Protein N-term A),Trimethyl (R),Trimethyl:13C(3)2H(9) (K),Trimethyl:13C(3)2H(9) (R),Trimethyl:2H(9) (K),Trimethyl:2H(9) (R),Trioxidation (C),Trioxidation (W),Trioxidation (Y),Tripalmitate (Protein N-term C),Tris (N),Triton (C-term),Triton (N-term),Trp->Ala (W),Trp->Arg (W),Trp->Asn (W),Trp->Asp (W),Trp->Cys (W),Trp->Gln (W),Trp->Glu (W),Trp->Gly (W),Trp->His (W),Trp->Hydroxykynurenin (W),Trp->Kynurenin (W),Trp->Lys (W),Trp->Met (W),Trp->Oxolactone (W),Trp->Phe (W),Trp->Pro (W),Trp->Ser (W),Trp->Thr (W),Trp->Tyr (W),Trp->Val (W),Trp->Xle (W),Tween20 (N-term),Tween80 (C-term),Tyr->Ala (Y),Tyr->Arg (Y),Tyr->Asn (Y),Tyr->Asp (Y),Tyr->Cys (Y),Tyr->Dha (Y),Tyr->Gln (Y),Tyr->Glu (Y),Tyr->Gly (Y),Tyr->His (Y),Tyr->Lys (Y),Tyr->Met (Y),Tyr->Phe (Y),Tyr->Pro (Y),Tyr->Ser (Y),Tyr->Thr (Y),Tyr->Trp (Y),Tyr->Val (Y),Tyr->Xle (Y),Ub-amide (C),Ub-Br2 (C),Ub-fluorescein (C),Ub-VME (C),UgiJoullie (D),UgiJoullie (E),UgiJoullieProGly (D),UgiJoullieProGly (E),UgiJoullieProGlyProGly (D),UgiJoullieProGlyProGly (E),Val->Ala (V),Val->Arg (V),Val->Asn (V),Val->Asp (V),Val->Cys (V),Val->Gln (V),Val->Glu (V),Val->Gly (V),Val->His (V),Val->Lys (V),Val->Met (V),Val->Phe (V),Val->Pro (V),Val->Ser (V),Val->Thr (V),Val->Trp (V),Val->Tyr (V),Val->Xle (V),VFQQQTGG (K),VIEVYQEQTGG (K),Withaferin (C),Xle->Ala (I),Xle->Ala (L),Xle->Arg (I),Xle->Arg (L),Xle->Asn (I),Xle->Asn (L),Xle->Asp (I),Xle->Asp (L),Xle->Cys (I),Xle->Cys (L),Xle->Gln (I),Xle->Gln (L),Xle->Glu (I),Xle->Glu (L),Xle->Gly (I),Xle->Gly (L),Xle->His (I),Xle->His (L),Xle->Lys (I),Xle->Lys (L),Xle->Met (I),Xle->Met (L),Xle->Phe (I),Xle->Phe (L),Xle->Pro (I),Xle->Pro (L),Xle->Ser (I),Xle->Ser (L),Xle->Thr (I),Xle->Thr (L),Xle->Trp (I),Xle->Trp (L),Xle->Tyr (I),Xle->Tyr (L),Xle->Val (I),Xle->Val (L),Xlink:B10621 (C),Xlink:DMP (K),Xlink:DMP (Protein N-term),Xlink:DMP-de (K),Xlink:DMP-de (Protein N-term),Xlink:DMP-s (K),Xlink:DMP-s (Protein N-term),Xlink:DSS (K),Xlink:DSS (Protein N-term),Xlink:DSS-NH2 (K),Xlink:DSS-NH2 (Protein N-term),Xlink:DST (K),Xlink:DST (Protein N-term),Xlink:DTSSP (K),Xlink:DTSSP (Protein N-term),Xlink:EGS (K),Xlink:EGS (Protein N-term),Xlink:EGScleaved (K),Xlink:EGScleaved (Protein N-term),Xlink:SMCC (C),Xlink:SSD (K),ZGB (K),ZGB (N-term)
+++in_silico_digestion This filter option removes peptide hits which are not in the list of in silico peptides generated by the rules specified below
fasta fasta protein sequence database.input file*.fasta
enzyme Trypsin enzyme used for the digestion of the sample Chymotrypsin,Asp-N_ambic,Arg-C,Trypsin,Arg-C/P,Asp-N,Asp-N/B,2-iodobenzoate,TrypChymo,staphylococcal protease/D,Lys-C/P,proline endopeptidase,Glu-C+P,elastase-trypsin-chymotrypsin,Lys-N,Lys-C,V8-DE,CNBr,proline-endopeptidase/HKR,PepsinA,Clostripain/P,glutamyl endopeptidase,leukocyte elastase,PepsinA + P,Chymotrypsin/P,no cleavage,V8-E,unspecific cleavage,cyanogen-bromide,Trypsin/P,Formic_acid,Alpha-lytic protease,iodosobenzoate
specificity full Specificity of the filter full,semi,none
missed_cleavages-1 range of allowed missed cleavages in the peptide sequences
By default missed cleavages are ignored-1:∞
methionine_cleavage false Allow methionine cleavage at the N-terminus of the protein.true,false
+++missed_cleavages This filter option removes peptide hits which do not confirm with the allowed missed cleavages specified below.
number_of_missed_cleavages: range of allowed missed cleavages in the peptide sequences.
For example: 0:1 -> peptides with two or more missed cleavages will be removed,
0:0 -> peptides with any missed cleavages will be removed
enzyme Trypsin enzyme used for the digestion of the sample Chymotrypsin,Asp-N_ambic,Arg-C,Trypsin,Arg-C/P,Asp-N,Asp-N/B,2-iodobenzoate,TrypChymo,staphylococcal protease/D,Lys-C/P,proline endopeptidase,Glu-C+P,elastase-trypsin-chymotrypsin,Lys-N,Lys-C,V8-DE,CNBr,proline-endopeptidase/HKR,PepsinA,Clostripain/P,glutamyl endopeptidase,leukocyte elastase,PepsinA + P,Chymotrypsin/P,no cleavage,V8-E,unspecific cleavage,cyanogen-bromide,Trypsin/P,Formic_acid,Alpha-lytic protease,iodosobenzoate
+++rt Filtering by RT predicted by 'RTPredict'
p_value 0.0 Retention time filtering by the p-value predicted by RTPredict.0.0:1.0
p_value_1st_dim 0.0 Retention time filtering by the p-value predicted by RTPredict for first dimension.0.0:1.0
+++mz Filtering by mass error
error-1.0 Filtering by deviation to theoretical mass (disabled for negative values).
unit ppm Absolute or relative error.Da,ppm
+++best Filtering best hits per spectrum (for peptides) or from proteins
n_peptide_hits 0 Keep only the 'n' highest scoring peptide hits per spectrum (for n > 0).0:∞
n_protein_hits 0 Keep only the 'n' highest scoring protein hits (for n > 0).0:∞
strict false Keep only the highest scoring peptide hit.
Similar to n_peptide_hits=1, but if there are ties between two or more highest scoring hits, none are kept.true,false
n_to_m_peptide_hits: Peptide hit rank range to extracts