| OpenMS 2.5.0

MSExperiment Member List

This is the complete list of members for MSExperiment, including all inherited members.

addChromatogram(const MSChromatogram &chromatogram) | MSExperiment |
addChromatogram(MSChromatogram &&chrom) | MSExperiment | inline
addSpectrum(const MSSpectrum &spectrum) | MSExperiment |
addSpectrum(MSSpectrum &&spectrum) | MSExperiment | inline
areaBegin(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz) | MSExperiment |
areaBeginConst(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz) const | MSExperiment |
areaEnd() | MSExperiment |
areaEndConst() const | MSExperiment |
AreaIterator typedef | MSExperiment |
AreaType typedef | MSExperiment |
Base typedef | MSExperiment |
begin() | MSExperiment | inline
begin() const | MSExperiment | inline
ChromatogramPeakT typedef | MSExperiment |
ChromatogramPeakType typedef | MSExperiment |
chromatograms_ | MSExperiment | protected
ChromatogramType typedef | MSExperiment |
clear(bool clear_meta_data) | MSExperiment |
clearMetaDataArrays() | MSExperiment |
clearMetaInfo() | MetaInfoInterface |
clearRanges() | RangeManager< 2 > | inline
comment_ | ExperimentalSettings | protected
const_iterator typedef | MSExperiment |
ConstAreaIterator typedef | MSExperiment |
ConstIterator typedef | MSExperiment |
contacts_ | ExperimentalSettings | protected
CoordinateType typedef | MSExperiment |
createIfNotExists_() | MetaInfoInterface | inline protected
createSpec_(PeakType::CoordinateType rt) | MSExperiment | private
createSpec_(PeakType::CoordinateType rt, const StringList &metadata_names) | MSExperiment | private
datetime_ | ExperimentalSettings | protected
DIMENSION enum value | RangeManager< 2 > |
DocumentIdentifier() | DocumentIdentifier |
DocumentIdentifier(const DocumentIdentifier &)=default | DocumentIdentifier |
DocumentIdentifier(DocumentIdentifier &&)=default | DocumentIdentifier |
empty() const | MSExperiment | inline
end() | MSExperiment | inline
end() const | MSExperiment | inline
ExperimentalSettings()=default | ExperimentalSettings |
ExperimentalSettings(const ExperimentalSettings &)=default | ExperimentalSettings |
ExperimentalSettings(ExperimentalSettings &&)=default | ExperimentalSettings |
file_path_ | DocumentIdentifier | protected
file_type_ | DocumentIdentifier | protected
fraction_identifier_ | ExperimentalSettings | protected
get2DData(Container &cont) const | MSExperiment | inline
getChromatogram(Size id) | MSExperiment |
getChromatograms() const | MSExperiment |
getChromatograms() | MSExperiment |
getComment() const | ExperimentalSettings |
getContacts() const | ExperimentalSettings |
getContacts() | ExperimentalSettings |
getDataRange() const | MSExperiment |
getDateTime() const | ExperimentalSettings |
getExperimentalSettings() const | MSExperiment |
getExperimentalSettings() | MSExperiment |
getFractionIdentifier() const | ExperimentalSettings |
getHPLC() const | ExperimentalSettings |
getHPLC() | ExperimentalSettings |
getIdentifier() const | DocumentIdentifier |
getInstrument() const | ExperimentalSettings |
getInstrument() | ExperimentalSettings |
getKeys(std::vector< String > &keys) const | MetaInfoInterface |
getKeys(std::vector< UInt > &keys) const | MetaInfoInterface |
getLoadedFilePath() const | DocumentIdentifier |
getLoadedFileType() const | DocumentIdentifier |
getMax() const | RangeManager< 2 > | inline
getMaxInt() const | RangeManager< 2 > | inline
getMaxMZ() const | MSExperiment |
getMaxRT() const | MSExperiment |
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMin() const | RangeManager< 2 > | inline
getMinInt() const | RangeManager< 2 > | inline
getMinMZ() const | MSExperiment |
getMinRT() const | MSExperiment |
getMSLevels() const | MSExperiment |
getNrChromatograms() const | MSExperiment |
getNrSpectra() const | MSExperiment |
getPrecursorSpectrum(ConstIterator iterator) const | MSExperiment |
getPrimaryMSRunPath(StringList &toFill) const | MSExperiment |
getProteinIdentifications() const | ExperimentalSettings |
getProteinIdentifications() | ExperimentalSettings |
getSample() const | ExperimentalSettings |
getSample() | ExperimentalSettings |
getSize() const | MSExperiment |
getSourceFiles() const | ExperimentalSettings |
getSourceFiles() | ExperimentalSettings |
getSpectra() const | MSExperiment |
getSpectra() | MSExperiment |
getSpectrum(Size id) | MSExperiment |
getTIC(float rt_bin_size=0) const | MSExperiment |
hplc_ | ExperimentalSettings | protected
id_ | DocumentIdentifier | protected
instrument_ | ExperimentalSettings | protected
int_range_ | RangeManager< 2 > | protected
IntensityRangeType typedef | RangeManager< 2 > |
IntensityType typedef | MSExperiment |
isMetaEmpty() const | MetaInfoInterface |
isSorted(bool check_mz=true) const | MSExperiment |
iterator typedef | MSExperiment |
Iterator typedef | MSExperiment |
meta_ | MetaInfoInterface | protected
MetaInfoInterface() | MetaInfoInterface |
MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface |
MetaInfoInterface(MetaInfoInterface &&) noexcept | MetaInfoInterface |
metaRegistry() | MetaInfoInterface | static
metaValueExists(const String &name) const | MetaInfoInterface |
metaValueExists(UInt index) const | MetaInfoInterface |
ms_levels_ | MSExperiment | protected
MSExperiment() | MSExperiment |
MSExperiment(const MSExperiment &source) | MSExperiment |
MSExperiment(MSExperiment &&)=default | MSExperiment |
operator!=(const MSExperiment &rhs) const | MSExperiment |
RangeManager< 2 >::operator!=(const RangeManager &rhs) const | RangeManager< 2 > | inline
OpenMS::ExperimentalSettings::operator!=(const ExperimentalSettings &rhs) const | ExperimentalSettings |
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface |
operator=(const MSExperiment &source) | MSExperiment |
operator=(MSExperiment &&) &=default | MSExperiment |
operator=(const ExperimentalSettings &source) | MSExperiment |
RangeManager< 2 >::operator=(const RangeManager &rhs) | RangeManager< 2 > | inline
OpenMS::ExperimentalSettings::operator=(ExperimentalSettings &&) &=default | ExperimentalSettings |
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs) | MetaInfoInterface |
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept | MetaInfoInterface |
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &)=default | DocumentIdentifier |
OpenMS::DocumentIdentifier::operator=(DocumentIdentifier &&) &=default | DocumentIdentifier |
operator==(const MSExperiment &rhs) const | MSExperiment |
RangeManager< 2 >::operator==(const RangeManager &rhs) const | RangeManager< 2 > | inline
OpenMS::ExperimentalSettings::operator==(const ExperimentalSettings &rhs) const | ExperimentalSettings |
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface |
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) const | DocumentIdentifier |
operator[](Size n) | MSExperiment | inline
operator[](Size n) const | MSExperiment | inline
PeakT typedef | MSExperiment |
PeakType typedef | MSExperiment |
pos_range_ | RangeManager< 2 > | protected
PositionRangeType typedef | RangeManager< 2 > |
PositionType typedef | RangeManager< 2 > |
protein_identifications_ | ExperimentalSettings | protected
RangeManager() | RangeManager< 2 > | inline
RangeManager(const RangeManager &rhs) | RangeManager< 2 > | inline
RangeManager(RangeManager &&) noexcept=default | RangeManager< 2 > |
RangeManagerType typedef | MSExperiment |
removeMetaValue(const String &name) | MetaInfoInterface |
removeMetaValue(UInt index) | MetaInfoInterface |
reserve(Size s) | MSExperiment | inline
reserveSpaceChromatograms(Size s) | MSExperiment |
reserveSpaceSpectra(Size s) | MSExperiment |
reset() | MSExperiment |
resize(Size s) | MSExperiment | inline
RTBegin(CoordinateType rt) const | MSExperiment |
RTBegin(CoordinateType rt) | MSExperiment |
RTEnd(CoordinateType rt) const | MSExperiment |
RTEnd(CoordinateType rt) | MSExperiment |
sample_ | ExperimentalSettings | protected
set2DData(const Container &container) | MSExperiment | inline
set2DData(const Container &container, const StringList &store_metadata_names) | MSExperiment | inline
set2DData(const Container &container) | MSExperiment | inline
setChromatograms(const std::vector< MSChromatogram > &chromatograms) | MSExperiment |
setComment(const String &comment) | ExperimentalSettings |
setContacts(const std::vector< ContactPerson > &contacts) | ExperimentalSettings |
setDateTime(const DateTime &date) | ExperimentalSettings |
setFractionIdentifier(const String &fraction_identifier) | ExperimentalSettings |
setHPLC(const HPLC &hplc) | ExperimentalSettings |
setIdentifier(const String &id) | DocumentIdentifier |
setInstrument(const Instrument &instrument) | ExperimentalSettings |
setLoadedFilePath(const String &file_name) | DocumentIdentifier |
setLoadedFileType(const String &file_name) | DocumentIdentifier |
setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface |
setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface |
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications) | ExperimentalSettings |
setSample(const Sample &sample) | ExperimentalSettings |
setSourceFiles(const std::vector< SourceFile > &source_files) | ExperimentalSettings |
setSpectra(const std::vector< MSSpectrum > &spectra) | MSExperiment |
size() const | MSExperiment | inline
sortChromatograms(bool sort_rt=true) | MSExperiment |
sortSpectra(bool sort_mz=true) | MSExperiment |
source_files_ | ExperimentalSettings | protected
spectra_ | MSExperiment | protected
SpectrumType typedef | MSExperiment |
swap(MSExperiment &from) | MSExperiment |
OpenMS::ExperimentalSettings::swap(DocumentIdentifier &from) | DocumentIdentifier |
total_size_ | MSExperiment | protected
updateRanges() override | MSExperiment | virtual
updateRanges(Int ms_level) | MSExperiment |
updateRanges_(const PeakIteratorType &begin, const PeakIteratorType &end) | RangeManager< 2 > | inline protected
value_type typedef | MSExperiment |
~DocumentIdentifier() | DocumentIdentifier | virtual
~ExperimentalSettings() override | ExperimentalSettings |
~MetaInfoInterface() | MetaInfoInterface |
~RangeManager() | RangeManager< 2 > | inline virtual