| OpenMS 2.5.0

ModificationDefinitionsSet Member List

This is the complete list of members for ModificationDefinitionsSet, including all inherited members.

addMatches_(std::multimap< double, ModificationDefinition > &matches, double mass, const String &residue, ResidueModification::TermSpecificity term_spec, const std::set< ModificationDefinition > &source, bool is_delta, double tolerance) | ModificationDefinitionsSet | protected static
addModification(const ModificationDefinition &mod_def) | ModificationDefinitionsSet |
findMatches(std::multimap< double, ModificationDefinition > &matches, double mass, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY, bool consider_fixed=true, bool consider_variable=true, bool is_delta=true, double tolerance=0.01) const | ModificationDefinitionsSet |
fixed_mods_ | ModificationDefinitionsSet | protected
getFixedModificationNames() const | ModificationDefinitionsSet |
getFixedModifications() const | ModificationDefinitionsSet |
getMaxModifications() const | ModificationDefinitionsSet |
getModificationNames() const | ModificationDefinitionsSet |
getModificationNames(StringList &fixed_modifications, StringList &variable_modifications) const | ModificationDefinitionsSet |
getModifications() const | ModificationDefinitionsSet |
getNumberOfFixedModifications() const | ModificationDefinitionsSet |
getNumberOfModifications() const | ModificationDefinitionsSet |
getNumberOfVariableModifications() const | ModificationDefinitionsSet |
getVariableModificationNames() const | ModificationDefinitionsSet |
getVariableModifications() const | ModificationDefinitionsSet |
inferFromPeptides(const std::vector< PeptideIdentification > &peptides) | ModificationDefinitionsSet |
isCompatible(const AASequence &peptide) const | ModificationDefinitionsSet |
max_mods_per_peptide_ | ModificationDefinitionsSet | protected
ModificationDefinitionsSet() | ModificationDefinitionsSet |
ModificationDefinitionsSet(const ModificationDefinitionsSet &rhs) | ModificationDefinitionsSet |
ModificationDefinitionsSet(const StringList &fixed_modifications, const StringList &variable_modifications) | ModificationDefinitionsSet |
operator!=(const ModificationDefinitionsSet &rhs) const | ModificationDefinitionsSet |
operator=(const ModificationDefinitionsSet &element) | ModificationDefinitionsSet |
operator==(const ModificationDefinitionsSet &rhs) const | ModificationDefinitionsSet |
setMaxModifications(Size max_mod) | ModificationDefinitionsSet |
setModifications(const std::set< ModificationDefinition > &mod_defs) | ModificationDefinitionsSet |
setModifications(const String &fixed_modifications, const String &variable_modifications) | ModificationDefinitionsSet |
setModifications(const StringList &fixed_modifications, const StringList &variable_modifications) | ModificationDefinitionsSet |
variable_mods_ | ModificationDefinitionsSet | protected
~ModificationDefinitionsSet() | ModificationDefinitionsSet | virtual