| OpenMS 2.5.0

NucleicAcidSpectrumGenerator Member List

This is the complete list of members for NucleicAcidSpectrumGenerator, including all inherited members.

a_intensity_ | NucleicAcidSpectrumGenerator | protected
aB_intensity_ | NucleicAcidSpectrumGenerator | protected
add_a_ions_ | NucleicAcidSpectrumGenerator | protected
add_aB_ions_ | NucleicAcidSpectrumGenerator | protected
add_all_precursor_charges_ | NucleicAcidSpectrumGenerator | protected
add_b_ions_ | NucleicAcidSpectrumGenerator | protected
add_c_ions_ | NucleicAcidSpectrumGenerator | protected
add_d_ions_ | NucleicAcidSpectrumGenerator | protected
add_first_prefix_ion_ | NucleicAcidSpectrumGenerator | protected
add_metainfo_ | NucleicAcidSpectrumGenerator | protected
add_precursor_peaks_ | NucleicAcidSpectrumGenerator | protected
add_w_ions_ | NucleicAcidSpectrumGenerator | protected
add_x_ions_ | NucleicAcidSpectrumGenerator | protected
add_y_ions_ | NucleicAcidSpectrumGenerator | protected
add_z_ions_ | NucleicAcidSpectrumGenerator | protected
addAMinusBPeaks_(MSSpectrum &spectrum, const std::vector< double > &fragment_masses, const NASequence &oligo, Size start=0) const | NucleicAcidSpectrumGenerator | protected
addChargedSpectrum_(MSSpectrum &spectrum, const MSSpectrum &uncharged_spectrum, Int charge, bool add_precursor) const | NucleicAcidSpectrumGenerator | protected
addFragmentPeaks_(MSSpectrum &spectrum, const std::vector< double > &fragment_masses, const String &ion_type, double offset, double intensity, Size start=0) const | NucleicAcidSpectrumGenerator | protected
b_intensity_ | NucleicAcidSpectrumGenerator | protected
c_intensity_ | NucleicAcidSpectrumGenerator | protected
check_defaults_ | DefaultParamHandler | protected
d_intensity_ | NucleicAcidSpectrumGenerator | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getDefaults() const | DefaultParamHandler |
getMultipleSpectra(std::map< Int, MSSpectrum > &spectra, const NASequence &oligo, const std::set< Int > &charges, Int base_charge=1) const | NucleicAcidSpectrumGenerator |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSpectrum(MSSpectrum &spectrum, const NASequence &oligo, Int min_charge, Int max_charge) const | NucleicAcidSpectrumGenerator |
getSubsections() const | DefaultParamHandler |
getUnchargedSpectrum_(const NASequence &oligo) const | NucleicAcidSpectrumGenerator | protected
NucleicAcidSpectrumGenerator() | NucleicAcidSpectrumGenerator |
NucleicAcidSpectrumGenerator(const NucleicAcidSpectrumGenerator &source) | NucleicAcidSpectrumGenerator |
operator=(const NucleicAcidSpectrumGenerator &source) | NucleicAcidSpectrumGenerator |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
precursor_intensity_ | NucleicAcidSpectrumGenerator | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
subsections_ | DefaultParamHandler | protected
updateMembers_() override | NucleicAcidSpectrumGenerator | virtual
w_intensity_ | NucleicAcidSpectrumGenerator | protected
warn_empty_defaults_ | DefaultParamHandler | protected
x_intensity_ | NucleicAcidSpectrumGenerator | protected
y_intensity_ | NucleicAcidSpectrumGenerator | protected
z_intensity_ | NucleicAcidSpectrumGenerator | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~NucleicAcidSpectrumGenerator() override | NucleicAcidSpectrumGenerator |