| OpenMS 2.5.0

PosteriorErrorProbabilityModel Member List

This is the complete list of members for PosteriorErrorProbabilityModel, including all inherited members.

check_defaults_ | DefaultParamHandler | protected
computeLLAndIncorrectPosteriorsFromLogDensities(const std::vector< double > &incorrect_log_density, const std::vector< double > &correct_log_density, std::vector< double > &incorrect_posterior) | PosteriorErrorProbabilityModel |
computeLogLikelihood(const std::vector< double > &incorrect_density, const std::vector< double > &correct_density) | PosteriorErrorProbabilityModel |
computeProbability(double score) const | PosteriorErrorProbabilityModel |
correctly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
extractAndTransformScores(const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids, const bool split_charge, const bool top_hits_only, const bool target_decoy_available, const double fdr_for_targets_smaller) | PosteriorErrorProbabilityModel | static
fillDensities(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel |
fillLogDensities(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel |
fillLogDensitiesGumbel(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel |
fit(std::vector< double > &search_engine_scores, const String &outlier_handling) | PosteriorErrorProbabilityModel |
fit(std::vector< double > &search_engine_scores, std::vector< double > &probabilities, const String &outlier_handling) | PosteriorErrorProbabilityModel |
fitGumbelGauss(std::vector< double > &search_engine_scores, const String &outlier_handling) | PosteriorErrorProbabilityModel |
getBothGnuplotFormula(const GaussFitter::GaussFitResult &incorrect, const GaussFitter::GaussFitResult &correct) const | PosteriorErrorProbabilityModel |
getCorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline
getDefaults() const | DefaultParamHandler |
getGaussGnuplotFormula(const GaussFitter::GaussFitResult &params) const | PosteriorErrorProbabilityModel |
getGumbel_(double x, const GaussFitter::GaussFitResult &params) | PosteriorErrorProbabilityModel | inline static
getGumbelGnuplotFormula(const GaussFitter::GaussFitResult &params) const | PosteriorErrorProbabilityModel |
getIncorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline
getIncorrectlyAssignedGumbelFitResult() const | PosteriorErrorProbabilityModel | inline
getName() const | DefaultParamHandler |
getNegativeGnuplotFormula_ | PosteriorErrorProbabilityModel | private
getNegativePrior() const | PosteriorErrorProbabilityModel | inline
getParameters() const | DefaultParamHandler |
getPositiveGnuplotFormula_ | PosteriorErrorProbabilityModel | private
getSmallestScore() | PosteriorErrorProbabilityModel | inline
getSubsections() const | DefaultParamHandler |
incorrectly_assigned_fit_gumbel_param_ | PosteriorErrorProbabilityModel | private
incorrectly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private
initPlots(std::vector< double > &x_scores) | PosteriorErrorProbabilityModel |
max_correctly_ | PosteriorErrorProbabilityModel | private
max_incorrectly_ | PosteriorErrorProbabilityModel | private
negative_prior_ | PosteriorErrorProbabilityModel | private
operator=(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
plotTargetDecoyEstimation(std::vector< double > &target, std::vector< double > &decoy) | PosteriorErrorProbabilityModel |
pos_neg_mean_weighted_posteriors(const std::vector< double > &x_scores, const std::vector< double > &incorrect_posteriors) | PosteriorErrorProbabilityModel |
pos_neg_sigma_weighted_posteriors(const std::vector< double > &x_scores, const std::vector< double > &incorrect_posteriors, const std::pair< double, double > &means) | PosteriorErrorProbabilityModel |
PosteriorErrorProbabilityModel() | PosteriorErrorProbabilityModel |
PosteriorErrorProbabilityModel(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private
processOutliers_(std::vector< double > &x_scores, const String &outlier_handling) const | PosteriorErrorProbabilityModel | private
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
smallest_score_ | PosteriorErrorProbabilityModel | private
subsections_ | DefaultParamHandler | protected
transformScore_(const String &engine, const PeptideHit &hit) | PosteriorErrorProbabilityModel | private static
tryGnuplot(const String &gp_file) | PosteriorErrorProbabilityModel |
updateMembers_() | DefaultParamHandler | protected virtual
updateScores(const PosteriorErrorProbabilityModel &PEP_model, const String &search_engine, const Int charge, const bool prob_correct, const bool split_charge, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids, bool &unable_to_fit_data, bool &data_might_not_be_well_fit) | PosteriorErrorProbabilityModel | static
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~PosteriorErrorProbabilityModel() override | PosteriorErrorProbabilityModel |