| OpenMS 2.5.0

### - s -

- s_bion : CompNovoIonScoringBase::IonScore
- s_isotope_pattern_1 : CompNovoIonScoringBase::IonScore
- s_isotope_pattern_2 : CompNovoIonScoringBase::IonScore
- s_list : MSDataAggregatingConsumer
- s_tmp : MSDataAggregatingConsumer
- s_witness : CompNovoIonScoringBase::IonScore
- s_yion : CompNovoIonScoringBase::IonScore
- sample : ExperimentalDesign::MSFileSectionEntry , MzTabMetaData
- sample_ : ExperimentalSettings
- sample_name : AbsoluteQuantitationStandards::runConcentration
- sample_processing : MzTabMetaData
- sample_ref : MzTabAssayMetaData
- sample_refs : MzTabStudyVariableMetaData
- sample_section_ : ExperimentalDesign
- sample_to_rowindex_ : ExperimentalDesign::SampleSection
- samplecomment_ : SampleVisualizer
- sampleconcentration_ : SampleVisualizer
- samplemass_ : SampleVisualizer
- samplename_ : SampleVisualizer
- samplenumber_ : SampleVisualizer
- sampleorganism_ : SampleVisualizer
- samples_ : FIAMSScheduler , MzMLHandler
- samples_labels_ : MultiplexDeltaMassesGenerator
- samplestate_ : SampleVisualizer
- samplevolume_ : SampleVisualizer
- sampling_points_per_FWHM_ : RawMSSignalSimulation
- satellites_ : MultiplexFilteredPeak
- satellites_profile_ : MultiplexFilteredPeak
- saveallbutton_ : MetaDataBrowser
- sc_charge_ : ProtonDistributionModel
- sc_charge_full_ : ProtonDistributionModel
- sc_charge_ion_c_term_ : ProtonDistributionModel
- sc_charge_ion_n_term_ : ProtonDistributionModel
- scale_ : ContinuousWaveletTransform , EuclideanSimilarity , LinearInterpolation< Key, Value > , PeakPickerCWT , ProductModel< 2 >
- scale_0_ : BilinearInterpolation< Key, Value >
- scale_1_ : BilinearInterpolation< Key, Value >
- scaling_ : InterpolationModel
- scaling_lower : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- scaling_upper : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- scan : MS1Signal , MS2Fragment
- SCAN : MSPeak
- scan : PSLPFormulation::IndexTriple
- scan_apex : SHFeature
- scan_count_ : MzMLHandler , MzXMLHandler
- scan_count_total_ : MzMLHandler
- scan_dir_ : MassAnalyzerVisualizer
- scan_direction_ : MassAnalyzer
- SCAN_END : MS2Info
- scan_end : SHFeature
- scan_event_number : Ms2SpectrumStats::ScanEvent
- scan_index : NucleicAcidSearchEngine::PrecursorInfo , CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMzTabWriter::SiriusAdapterIdentification
- scan_index_heavy : OPXLDataStructs::CrossLinkSpectrumMatch
- scan_index_light : OPXLDataStructs::CrossLinkSpectrumMatch
- scan_indices : SiriusMSFile::CompoundInfo
- scan_law_ : MassAnalyzer , MassAnalyzerVisualizer
- scan_map_ : PepXMLFile
- scan_mode_ : InstrumentSettings
- scan_number : CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMzTabWriter::SiriusAdapterIdentification , SpectrumMetaDataLookup::SpectrumMetaData
- scan_rate_ : MassAnalyzer , MassAnalyzerVisualizer
- scan_regexp_ : SpectrumLookup
- SCAN_START : MS2Info
- scan_start : SHFeature
- scan_time_ : MassAnalyzer , MassAnalyzerVisualizer
- scan_windows_ : InstrumentSettings
- scanEnd : MS2Fragment
- scans : IsotopeCluster
- scans_ : SpectrumLookup
- scanStart : MS2Fragment
- scanTRIndex_ : SuperHirnParameters
- scene_ : TOPPASWidget
- schema_location_ : XMLFile
- schema_version_ : MzIdentMLDOMHandler , XMLFile
- scope_path_ : CVMappingRule
- score : CompNovoIonScoringBase::IonScore , CsiFingerIdMzTabWriter::CsiAdapterHit , DeNovoIonScoring::IonScore , FeatureFinderAlgorithmIsotopeWavelet::BoxElement , IDFilter::HasGoodScore< HitType > , IsotopeWaveletTransform< PeakType >::BoxElement , MorpheusScore::Result
- SCORE : MSPeak
- score : OPXLDataStructs::CrossLinkSpectrumMatch , RNPxlReportRow , SimpleSearchEngineAlgorithm::AnnotatedHit_ , SiriusMzTabWriter::SiriusAdapterHit , TargetedSpectraExtractor::Match , RateScorePair , SIPPeptide
- score_ : ChargePair , CompNovoIdentificationBase::Permut , DeconvPeak , PeptideHit , ProteinHit
- score_clas_pairs_ : ROCCurve
- score_cutoff_ : MapAlignmentAlgorithmIdentification
- SCORE_HOLDER : SHFeature
- score_type : PeptideHit::PepXMLAnalysisResult
- score_type_ : InspectOutfile , PeptideIdentification , PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
- score_type_names : PercolatorOutfile
- score_type_ref : IdentificationData::ModifyMultiIndexAddScore< ElementType >
- score_types_ : IdentificationData
- score_weights : MRMFeatureSelector::SelectorParameters
- scoredistribution_ : MapAlignmentAlgorithmSpectrumAlignment
- scores : AppliedProcessingStep , ParentMoleculeGroup
- scores_ : IsotopeWaveletTransform< PeakType >
- scoring_method_ : ConsensusIDAlgorithmPEPMatrix
- scoring_model_ : MRMFeatureFinderScoring
- sd_map_ : MzIdentMLDOMHandler
- search_database_ref : MzIdentMLDOMHandler::SpectrumIdentification
- search_engine : MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
- search_engine_ : MzIdentMLDOMHandler , PepXMLFile , ProteinIdentification
- search_engine_score : MzTabOSMSectionRow , MzTabPSMSectionRow
- search_engine_score_ms_run : MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
- search_engine_version_ : MzIdentMLDOMHandler , ProteinIdentification
- search_id_ : PepXMLFile
- search_identifier_ : MascotRemoteQuery
- search_param_ : ConsensusXMLFile , FeatureXMLFile
- search_parameters_ : MascotXMLHandler , ProteinIdentification
- search_score_summary_ : PepXMLFile
- search_summary_ : PepXMLFile
- search_title_ : MascotInfile
- search_type_ : MascotInfile
- searched_mass_ : AccurateMassSearchResult
- searchtype : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- second : ProbablePhosphoSites , TransformationModel::DataPoint
- second_nearest_gap_ : StablePairFinder
- secondary_id_ : SpectralMatch
- secondary_types : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- seed_ : UniqueIdGenerator
- seeds_ : FeatureFinderAlgorithmPicked
- seen_experiment_ : PepXMLFile
- segment_step_length : MRMFeatureSelector::SelectorParameters
- segment_window_length : MRMFeatureSelector::SelectorParameters
- select_transition_group : MRMFeatureSelector::SelectorParameters
- selected_ : Annotation1DItem , MultiGradientSelector
- selected_activation_ : IsobaricChannelExtractor
- selected_color_ : MultiGradientSelector
- selected_ion_count_ : MzMLHandler
- selected_peak_ : Spectrum2DCanvas , SpectrumCanvas
- selected_pen_ : Annotations1DContainer
- selector_ : MRMFeatureSelector_test
- semi_cleavage_ : XTandemInfile
- sep_ : MzTabStringList , SVOutStream , CSVWriter
- seq_ : NASequence
- seq_1 : ProbablePhosphoSites
- seq_2 : ProbablePhosphoSites
- sequence : NucleicAcidSearchEngine::AnnotatedHit , FASTAFile::FASTAEntry , IdentifiedSequence< SeqType > , ParentMolecule , MzIdentMLDOMHandler::DBSequence , MzTabOligonucleotideSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabPSMSectionRow , ProteinResolver::PeptideEntry , SimpleSearchEngineAlgorithm::AnnotatedHit_ , Peptide , Protein , LightCompound , LightProtein , Peptide , Protein , SIPPeptide
- sequence_ : IMSElement , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , PeptideHit , ProteinHit
- sequence_header_filter_ : SequestInfile
- sequence_tag_min_length_ : OpenPepXLLFAlgorithm
- sequences : SVMData
- sequences_ : PrecursorIonSelectionPreprocessing
- seriesposition_regex_ : SpectrumAnnotator
- server_path_ : MascotRemoteQuery
- set : EGHFitter1D::Data , EmgFitter1D::Data
- set_Name_ID_map_ : QcMLFile
- set_to_zero_ : ParentPeakMower
- setQualityAts_ : QcMLFile
- setQualityQPs_ : QcMLFile
- setQualityQPs_members_ : QcMLFile
- setting : MzTabSoftwareMetaData
- settings_ : FullSwathFileConsumer , MSDataWritingConsumer
- sf : RawMSSignalSimulation::ContaminantInfo
- sf_accession : SiriusMSFile::AccessionInfo
- sf_path : SiriusMSFile::AccessionInfo
- sf_type : SiriusMSFile::AccessionInfo
- sfIsoDist10 : IsotopicDist
- sfIsoDist50 : IsotopicDist
- sfIsoDist90 : IsotopicDist
- sfIsoMass10 : IsotopicDist
- sfIsoMass50 : IsotopicDist
- sfIsoMass90 : IsotopicDist
- sfMassStep : IsotopicDist
- sfMaxIsotopeIndex : IsotopicDist
- sfMaxMass : IsotopicDist
- sfMaxMassIndex : IsotopicDist
- sfMinMass : IsotopicDist
- sfNrIsotopes : IsotopicDist
- sgfilter_ : FIAMSDataProcessor
- sgolay_ : PeakPickerMRM
- sgolay_frame_length_ : PeakPickerMRM
- sgolay_polynomial_order_ : PeakPickerMRM
- shape : RawMSSignalSimulation::ContaminantInfo
- shift : RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
- short_name : MultiplexDeltaMassesGenerator::Label
- short_name_ : Residue
- show_alignment_ : Spectrum1DCanvas
- show_fragment_ions_ : SequestInfile
- show_grid_ : SpectrumCanvas
- show_legend_ : AxisWidget
- show_splitters_ : HistogramWidget
- show_timing_ : SpectrumCanvas
- si_map_ : MzIdentMLDOMHandler
- si_pro_map_ : MzIdentMLDOMHandler
- sidx_ : SpectrumAccessSqMass
- sigma : GaussFitter::GaussFitResult
- sigma_ : EGHTraceFitter , GaussFilterAlgorithm , GaussTraceFitter , IsotopeWaveletTransform< PeakType > , PrecursorIonSelectionPreprocessing , SVMWrapper
- sigma_5_bound_ : EGHTraceFitter
- sigma_square_ : EGHFitter1D , EGHModel
- sigma_square_2_ : EGHModel
- sigmas_ : SVMWrapper
- signal : OptimizePeakDeconvolution::Data , OptimizePick::Data , TwoDOptimization::Data
- signal2D : TwoDOptimization::Data
- signal_ : ContinuousWaveletTransform
- signal_length_ : ContinuousWaveletTransform
- signal_proportion : PrecursorPurity::PurityScores
- signal_to_noise : PeakShape
- signal_to_noise_ : FeatureFinderIdentificationAlgorithm , PeakPickerCWT , PeakPickerHiRes , PeakPickerIterative , PeakPickerMaxima , PeakPickerMRM
- signal_weight : PSLPFormulation::IndexTriple
- SignalToNoise : MSPeak , SHFeature
- signalToNoise_ : CentroidPeak
- significance_threshold_ : PeptideIdentification
- sil_2_sdat_ : MzIdentMLHandler
- sil_2_sdb_ : MzIdentMLHandler
- sil_2_sip_ : MzIdentMLHandler
- similarities_ : ConsensusIDAlgorithmSimilarity
- simulators_ : SvmTheoreticalSpectrumGeneratorSet
- sine_table_ : IsotopeWavelet
- singleMass_ : Adduct
- singletonRegistryInstance_ : SingletonRegistry
- site : MzTabModificationMetaData
- sites_ : UnimodXMLHandler
- size : ConsensusMap::ColumnHeader
- SIZE : IMSIsotopeDistribution
- size : MzMLHandlerHelper::BinaryData
- size_ : ClusterProxyKD , StringView
- size_only_ : FeatureFileOptions , FeatureXMLFile
- size_proportions_ : SaveImageDialog
- size_ratio_ : SaveImageDialog
- size_x_ : SaveImageDialog
- size_y_ : SaveImageDialog
- skip_chromatogram_ : MzMLHandler
- skip_data : MzXMLHandler::SpectrumData
- skip_protein_acc_update_ : XTandemXMLFile
- skip_spectrum_ : MzDataHandler , MzMLHandler , MzXMLHandler
- skip_xml_checks_ : IndexedMzMLHandler , MzMLSpectrumDecoder , PeakFileOptions
- slope_ : LinearRegression , TransformationModelLinear
- slope_bound_ : FeatureFinderAlgorithmPicked
- slope_max_ : TransformationModelBSpline
- slope_min_ : TransformationModelBSpline
- slope_of_baseline : PeakIntegrator::PeakShapeMetrics
- sm_ : XMLHandler
- small_molecule_data_ : MzTab
- small_molecule_quantification_unit : MzTabMetaData
- smallest_score_ : PosteriorErrorProbabilityModel
- smallmolecule_abundance_assay : MzTabSmallMoleculeSectionRow
- smallmolecule_abundance_std_error_study_variable : MzTabSmallMoleculeSectionRow
- smallmolecule_abundance_stdev_study_variable : MzTabSmallMoleculeSectionRow
- smallmolecule_abundance_study_variable : MzTabSmallMoleculeSectionRow
- smallmolecule_search_engine_score : MzTabMetaData
- smile : IdentifiedCompound
- smiles : CsiFingerIdMzTabWriter::CsiAdapterHit , MzTabSmallMoleculeSectionRow
- SMILES : TransitionTSVFile::TSVTransition
- smiles_string : Compound
- smiles_string_ : SpectralMatch
- smoothed_intensities_ : MassTrace
- sn_ : SignalToNoiseOpenMS< ContainerT >
- sn_bin_count_ : MRMFeatureFinderScoring , PeakPickerIterative , PeakPickerMRM
- sn_ratio : OpenSwath_Scores
- SN_statistics_ : SpectrumAnnotator
- sn_win_len_ : MRMFeatureFinderScoring , PeakPickerIterative , PeakPickerMRM
- sn_window_length_ : PeakPickerMaxima
- snap_factors_ : SpectrumCanvas
- snd_database_ : SequestInfile
- snr_weight_ : TargetedSpectraExtractor
- snt_ : PeakPickerMRM
- software : MzTabMetaData , MzTabSoftwareMetaData
- software_ : DataProcessing , Instrument , MzMLHandler , TargetedExperiment
- software_name_ : SoftwareVisualizer
- software_ref : DataProcessingStep , Prediction , RetentionTime
- software_version_ : SoftwareVisualizer
- solver_ : IsotopeWavelet , LPWrapper , OfflinePrecursorIonSelection , PrecursorIonSelection , PSLPFormulation , PSProteinInference
- sonar_ : OpenSwathOSWWriter , OpenSwathTSVWriter
- sonar_diff : OpenSwath_Scores
- sonar_lag : OpenSwath_Scores
- sonar_rsq : OpenSwath_Scores
- sonar_shape : OpenSwath_Scores
- sonar_sn : OpenSwath_Scores
- sonar_trend : OpenSwath_Scores
- sonarscoring_ : MRMFeatureFinderScoring
- sort_by_position_ : TheoreticalSpectrumGenerator
- sort_chromatograms_by_rt_ : PeakFileOptions
- sort_spectra_by_mz_ : PeakFileOptions
- sorted_ : ROCCurve
- source : MzTabInstrumentMetaData
- SOURCE_DIR : FTPeakDetectController
- source_feature_index_ : AccurateMassSearchResult
- source_file : SiriusMSFile::CompoundInfo
- source_file_ : ChromatogramSettings , SpectrumSettings
- source_files_ : ExperimentalSettings , MzMLHandler , TargetedExperiment
- source_format : SiriusMSFile::CompoundInfo
- source_out_param_ : TOPPASEdge
- sp_map_ : MzIdentMLDOMHandler
- spacer_ : Spectrum1DWidget
- spacing_ : ContinuousWaveletTransform , GaussFilter , GaussFilterAlgorithm , LinearResampler
- spacing_difference_ : PeakPickerHiRes , PeakPickerIterative , PeakPickerMaxima
- spacing_difference_gap_ : PeakPickerHiRes , PeakPickerMaxima
- spacing_for_spectra_resampling_ : MRMFeatureFinderScoring , OpenSwathScoring
- sparse_window_percent_ : SignalToNoiseEstimatorMedian< Container >
- spawns : PatternAuxData< TNeedle >
- spec_ : MzDataHandler , MzMLHandler
- spec_id_ : MzMLSqliteHandler , MzMLSqliteSwathHandler
- spec_name : LCMS
- spec_ref_ : MzTabSpectraRef
- spec_write_counter_ : MzXMLHandler
- species : MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSampleMetaData , MzTabSmallMoleculeSectionRow
- specificities : MzIdentMLDOMHandler::ModificationParam
- specificity_ : EnzymaticDigestion
- specificity_type_ : Modification
- specref_format : SiriusMSFile::CompoundInfo
- specrefs : SiriusMSFile::CompoundInfo
- spectra_ : InspectInfile , MSDataSqlConsumer , MSExperiment , SpectrumAccessOpenMSInMemory
- spectra_addition_method_ : OpenSwathScoring
- spectra_all_peaks : OPXLDataStructs::PreprocessedPairSpectra
- spectra_before_chroms_ : IndexedMzMLHandler
- spectra_combo_box_ : SpectraViewWidget
- spectra_data_ref : MzIdentMLDOMHandler::SpectrumIdentification , SpectrumMetaDataLookup
- spectra_expected_ : MSDataWritingConsumer
- spectra_identification_view_widget_ : TOPPViewBase
- spectra_index_ : CachedmzML , CachedMzMLHandler
- spectra_linear_peaks : OPXLDataStructs::PreprocessedPairSpectra
- spectra_meta_ : SpectrumAccessOpenMSInMemory
- spectra_offsets_ : IndexedMzMLHandler , MzMLHandler
- spectra_ref : MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
- spectra_search_box_ : SpectraViewWidget
- spectra_treewidget_ : SpectraViewWidget
- spectra_view_widget_ : TOPPViewBase
- spectra_written_ : MSDataCachedConsumer , MSDataWritingConsumer
- spectra_xlink_peaks : OPXLDataStructs::PreprocessedPairSpectra
- spectraview_behavior_ : TOPPViewBase
- spectrum : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , FeatureFinderAlgorithmPickedHelperStructs::Seed , MzMLHandler::SpectrumData , MzXMLHandler::SpectrumData , PeakIndex , TargetedSpectraExtractor::Match
- spectrum_addition_method_ : MRMFeatureFinderScoring
- spectrum_data_ : MzMLHandler , MzXMLHandler
- spectrum_id : LCMS
- spectrum_ID : SHFeature
- spectrum_identification_list_ref : MzIdentMLDOMHandler::SpectrumIdentification
- spectrum_identification_protocol_ref : MzIdentMLDOMHandler::SpectrumIdentification
- spectrum_identifications_ : Identification
- spectrum_ids_ : XTandemXMLFile
- spectrum_index_heavy_ : XQuestResultXMLHandler
- spectrum_index_light_ : XQuestResultXMLHandler
- spectrum_input_file_ : XQuestResultXMLHandler
- spectrum_widget_ : SpectrumCanvas
- spline_ : BSpline2d , SplinePackage , TransformationModelBSpline
- sptr : SwathMap
- sptr_ : SpectrumAccessTransforming
- SQ : MS2Info
- sql_batch_size_ : MzMLSqliteHandler
- sr_map_ : MzIdentMLDOMHandler
- ss_ : SVOutStream
- st_ : Annotation1DCaret
- stack_ : Param::ParamIterator
- stand_dev_residuals_ : LinearRegression
- stand_error_slope_ : LinearRegression
- start : FeatureFinderIdentificationAlgorithm::RTRegion , MzIdentMLDOMHandler::PeptideEvidence , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow
- start_ : PeptideEvidence
- start_point_ : Annotation1DDistanceItem
- start_pos : MoleculeParentMatch
- start_position_at_10 : PeakIntegrator::PeakShapeMetrics
- start_position_at_5 : PeakIntegrator::PeakShapeMetrics
- start_position_at_50 : PeakIntegrator::PeakShapeMetrics
- start_secs_ : StopWatch
- start_system_time_ : StopWatch
- start_usecs_ : StopWatch
- start_user_time_ : StopWatch
- started_writing_ : MSDataWritingConsumer
- startScan : MS2ConsensusSpectrum
- startTR : MS2ConsensusSpectrum
- state_ : MzTabNullNaNAndInfAbleBase , Sample
- states : AnnotationStatistics
- states_ : HiddenMarkovModel
- static_intensities : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- statistics1_ : BiGaussFitter1D , BiGaussModel
- statistics2_ : BiGaussFitter1D , BiGaussModel
- statistics_ : EGHModel , EmgModel , Fitter1D , GaussModel , PeptideProteinResolution
- stats_ : IsobaricQuantifier , PeptideAndProteinQuant
- status_ : PepXMLFile , TOPPASToolVertex
- status_list_ : MetaDataBrowser
- stdev_ : SignalToNoiseEstimatorMeanIterative< Container >
- step_ref : IdentificationData::ModifyMultiIndexAddProcessingStep< ElementType >
- steps_and_scores : ScoredProcessingResult
- stickdata_ : Spectrum3DOpenGLCanvas
- stn_estimates_ : SignalToNoiseEstimator< Container >
- stop : MzIdentMLDOMHandler::PeptideEvidence
- stop_after_feature_ : MRMTransitionGroupPicker
- stop_after_intensity_ratio_ : MRMTransitionGroupPicker
- stop_condition_ : FineIsotopePatternGenerator
- stop_report_after_feature_ : MRMFeatureFinderScoring
- store_ : DataMatrix
- store_compact_ : MascotGenericFile
- store_nucleic_acid_goterms_ : MzTabFile
- store_nucleic_acid_reliability_ : MzTabFile
- store_nucleic_acid_uri_ : MzTabFile
- store_oligonucleotide_reliability_ : MzTabFile
- store_oligonucleotide_uri_ : MzTabFile
- store_osm_reliability_ : MzTabFile
- store_osm_uri_ : MzTabFile
- store_peptide_reliability_ : MzTabFile
- store_peptide_uri_ : MzTabFile
- store_protein_goterms_ : MzTabFile
- store_protein_reliability_ : MzTabFile
- store_protein_uri_ : MzTabFile
- store_psm_reliability_ : MzTabFile
- store_psm_uri_ : MzTabFile
- store_smallmolecule_reliability_ : MzTabFile
- store_smallmolecule_uri_ : MzTabFile
- storeAllLowProbabilityMS2Scans_ : SuperHirnParameters
- strarray_ : TransitionTSVFile
- stream : LogStreamBuf::StreamStruct
- stream_ : IDBoostGraph::PrintAddressVisitor< CharT > , LogStreamNotifier
- stream_at_end_ : Bzip2Ifstream , GzipIfstream
- stream_list_ : LogStreamBuf
- stream_type_map_ : LogConfigHandler
- strict_ : MRMFeatureFinderScoring
- string_data_arrays_ : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
- strip_namespaces_ : CVMappingFile
- struct_size_in_datapoints_ : MorphologicalFilter
- study_variable : MzTabMetaData
- su_ : MRMFeatureFinderScoring , OpenSwathScoring
- sub_scores : PeptideHit::PepXMLAnalysisResult
- subordinate_feature_level_ : FeatureXMLFile
- subordinates_ : Feature
- subsamples_ : Sample
- subsections_ : DefaultParamHandler , TOPPBase
- subsections_TOPP_ : TOPPBase
- subspec_to_sequences_ : CompNovoIdentificationBase
- succ_states_ : HMMState
- success : DecoyHelper::Result
- sum_ : BasicStatistics< RealT >
- sum_formula : LightCompound
- sum_formula_ : SpectralMatch
- sum_xx_ : LinearRegressionWithoutIntercept
- sum_xy_ : LinearRegressionWithoutIntercept
- SumFormula : TransitionTSVFile::TSVTransition
- superimposer_ : MapAlignmentAlgorithmPoseClustering
- supported_schemes : TOPPASResource
- svm_feat_centers_ : FeatureFindingMetabo
- svm_feat_scales_ : FeatureFindingMetabo
- svm_min_prob_ : FeatureFinderIdentificationAlgorithm
- svm_n_parts_ : FeatureFinderIdentificationAlgorithm
- svm_n_samples_ : FeatureFinderIdentificationAlgorithm
- svm_params_ : SimpleSVM
- svm_predictor_names_ : FeatureFinderIdentificationAlgorithm
- svm_probs_external_ : FeatureFinderIdentificationAlgorithm
- svm_probs_internal_ : FeatureFinderIdentificationAlgorithm
- svm_quality_cutoff : FeatureFinderIdentificationAlgorithm
- svm_xval_out_ : FeatureFinderIdentificationAlgorithm
- swath_assay_ : PepXMLFile
- swath_consumers_ : CachedSwathFileConsumer , MzMLSwathFileConsumer
- swath_map_boundaries_ : FullSwathFileConsumer
- swath_maps_ : FullSwathFileConsumer
- symbol_ : Element
- symbols_ : ElementDB
- symmetric_ : LevMarqFitter1D , TransformationModelLinear
- symmetry_ : EmgFitter1D , EmgModel
- synonym_trans_ : HiddenMarkovModel
- synonym_trans_names_ : HiddenMarkovModel
- synonyms : ControlledVocabulary::CVTerm
- synonyms_ : DigestionEnzyme , MSPGenericFile , Residue , ResidueModification
- synonyms_separator_ : MSPGenericFile