| OpenMS 2.5.0

### - a -

- AAcid : seqan
- AAString : seqan
- AAStringIterator : seqan
- AppliedProcessingSteps : OpenMS::IdentificationDataInternal

### - b -

- BinaryDataArray : OpenSwath
- BinaryDataArrayPtr : OpenMS::Interfaces , OpenSwath
- BK_PrecPolicyDouble_type : OpenMS::StringConversions
- BK_PrecPolicyFloat_type : OpenMS::StringConversions
- BK_PrecPolicyLongDouble_type : OpenMS::StringConversions
- Byte : OpenMS

### - c -

- Chromatogram : OpenMS , OpenSwath
- ChromatogramMeta : OpenSwath
- ChromatogramMetaPtr : OpenMS::Interfaces , OpenSwath
- ChromatogramPtr : OpenMS::Interfaces , OpenSwath
- ChromatogramsReaderPtr : OpenMS::Interfaces
- ChromatogramsWriterPtr : OpenMS::Interfaces
- ChromatogramType : OpenMS::Internal
- ConstDataProcessingPtr : OpenMS

### - d -

- DataProcessingPtr : OpenMS
- DataProcessingSoftwares : OpenMS::IdentificationDataInternal
- DataProcessingSteps : OpenMS::IdentificationDataInternal
- DataQueries : OpenMS::IdentificationDataInternal
- DataQueryRef : OpenMS::IdentificationDataInternal
- DBSearchParams : OpenMS::IdentificationDataInternal
- DBSearchSteps : OpenMS::IdentificationDataInternal
- DoubleList : OpenMS

### - e -

- EigenMatrixXdPtr : OpenMS
- elution_peak : OpenMS

### - f -

- FeatureMapSim : OpenMS::SimTypes
- FeatureMapSimVector : OpenMS::SimTypes
- FuzzyAC : seqan

### - i -

- IdentifiedCompoundRef : OpenMS::IdentificationDataInternal
- IdentifiedCompounds : OpenMS::IdentificationDataInternal
- IdentifiedMoleculeRef : OpenMS::IdentificationDataInternal
- IdentifiedOligo : OpenMS::IdentificationDataInternal
- IdentifiedOligoRef : OpenMS::IdentificationDataInternal
- IdentifiedOligos : OpenMS::IdentificationDataInternal
- IdentifiedPeptide : OpenMS::IdentificationDataInternal
- IdentifiedPeptideRef : OpenMS::IdentificationDataInternal
- IdentifiedPeptides : OpenMS::IdentificationDataInternal
- IMSDataConsumer : OpenMS::Interfaces
- IndProtGrp : OpenMS
- IndProtGrps : OpenMS
- InputFileRef : OpenMS::IdentificationDataInternal
- InputFiles : OpenMS::IdentificationDataInternal
- Int : OpenMS
- Int32 : OpenMS
- Int64 : OpenMS
- integer : OpenMS::NNLS
- IntList : OpenMS
- ISignalToNoisePtr : OpenSwath

### - m -

- MapType : OpenMS::Internal
- MatchGroupRef : OpenMS::IdentificationDataInternal
- MoleculeQueryMatches : OpenMS::IdentificationDataInternal
- MSSimExperiment : OpenMS::SimTypes
- MutableEigenMatrixXdPtr : OpenMS
- MutableSimRandomNumberGeneratorPtr : OpenMS::SimTypes
- MZ_series : OpenMS
- MZ_series_ITERATOR : OpenMS
- MzTabNucleicAcidSectionRows : OpenMS
- MzTabOligonucleotideSectionRows : OpenMS
- MzTabOptionalColumnEntry : OpenMS
- MzTabOSMSectionRows : OpenMS
- MzTabPeptideSectionRows : OpenMS
- MzTabProteinSectionRows : OpenMS
- MzTabPSMSectionRows : OpenMS
- MzTabSmallMoleculeSectionRows : OpenMS

### - o -

- OnDiscPeakMap : OpenMS

### - p -

- ParentGroupRef : OpenMS::IdentificationDataInternal
- ParentMatches : OpenMS::IdentificationDataInternal
- ParentMoleculeGroupings : OpenMS::IdentificationDataInternal
- ParentMoleculeGroups : OpenMS::IdentificationDataInternal
- ParentMoleculeRef : OpenMS::IdentificationDataInternal
- ParentMolecules : OpenMS::IdentificationDataInternal
- PeakAnnotations : OpenMS::IdentificationDataInternal
- PeakAnnotationSteps : OpenMS::IdentificationDataInternal
- PeakIterator : OpenMS::OptimizationFunctions
- PeakMap : OpenMS
- PeakSpectrum : OpenMS
- PeakType : OpenMS
- ProcessingSoftwareRef : OpenMS::IdentificationDataInternal
- ProcessingStepRef : OpenMS::IdentificationDataInternal
- Protease : OpenMS

### - q -

- QueryMatchGroups : OpenMS::IdentificationDataInternal
- QueryMatchRef : OpenMS::IdentificationDataInternal

### - r -

- RawDataVector : OpenMS::OptimizationFunctions
- RibonucleotideChainEnd : OpenMS
- RNase : OpenMS

### - s -

- SampleChannels : OpenMS::SimTypes
- SampleProteins : OpenMS::SimTypes
- ScoreTypeRef : OpenMS::IdentificationDataInternal
- ScoreTypes : OpenMS::IdentificationDataInternal
- SearchParamRef : OpenMS::IdentificationDataInternal
- SIGNAL_iterator : OpenMS
- SignedSize : OpenMS
- SimChargeType : OpenMS::SimTypes
- SimCoordinateType : OpenMS::SimTypes
- SimIntensityType : OpenMS::SimTypes
- SimPointType : OpenMS::SimTypes
- Size : OpenMS
- SpectraReaderPtr : OpenMS::Interfaces
- SpectraWriterPtr : OpenMS::Interfaces
- Spectrum : OpenSwath
- SpectrumAccessPtr : OpenSwath
- SpectrumMeta : OpenSwath
- SpectrumMetaPtr : OpenMS::Interfaces , OpenSwath
- SpectrumPtr : OpenMS::Interfaces , OpenSwath
- SpectrumType : OpenMS::Internal
- StringList : OpenMS

### - t -

- Time : OpenMS
- ToolListType : OpenMS
- ToolMapping : OpenMS

### - u -

- UID : OpenMS
- UInt : OpenMS
- UInt32 : OpenMS
- UInt64 : OpenMS

### - x -

- XCorrEntry : OpenSwath::Scoring