| OpenMS 2.5.0

### - f -

- Factory() : Factory< FactoryProduct >
- FailedAPICall() : FailedAPICall
- FalseDiscoveryRate() : FalseDiscoveryRate
- FASTAContainer() : FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector >
- FASTAEntry() : FASTAFile::FASTAEntry
- FASTAFile() : FASTAFile
- fatalError() : XMLHandler , XMLValidator
- fdr_xprophet_() : XFDRAlgorithm
- Feature() : Feature
- feature() : KDTreeFeatureMaps
- FeatureDeconvolution() : FeatureDeconvolution
- FeatureDistance() : FeatureDistance
- FeatureEditDialog() : FeatureEditDialog
- FeatureFileOptions() : FeatureFileOptions
- FeatureFinder() : FeatureFinder
- FeatureFinderAlgorithm() : FeatureFinderAlgorithm
- FeatureFinderAlgorithmIsotopeWavelet() : FeatureFinderAlgorithmIsotopeWavelet
- FeatureFinderAlgorithmMRM() : FeatureFinderAlgorithmMRM
- FeatureFinderAlgorithmPicked() : FeatureFinderAlgorithmPicked
- FeatureFinderAlgorithmSH() : FeatureFinderAlgorithmSH
- FeatureFinderAlgorithmSHCtrl() : FeatureFinderAlgorithmSHCtrl
- FeatureFinderIdentificationAlgorithm() : FeatureFinderIdentificationAlgorithm
- FeatureFinderMultiplexAlgorithm() : FeatureFinderMultiplexAlgorithm
- FeatureFindingMetabo() : FeatureFindingMetabo
- FeatureGroupingAlgorithm() : FeatureGroupingAlgorithm
- FeatureGroupingAlgorithmKD() : FeatureGroupingAlgorithmKD
- FeatureGroupingAlgorithmLabeled() : FeatureGroupingAlgorithmLabeled
- FeatureGroupingAlgorithmQT() : FeatureGroupingAlgorithmQT
- FeatureGroupingAlgorithmUnlabeled() : FeatureGroupingAlgorithmUnlabeled
- FeatureHandle() : FeatureHandle
- FeatureHandleMutable_() : FeatureHandle::FeatureHandleMutable_
- FeatureHypothesis() : FeatureHypothesis
- FeatureLCProfile() : FeatureLCProfile
- FeatureMap() : FeatureMap
- FeatureMapToAttachment() : MRMFeatureFilter
- FeatureOpenMS() : FeatureOpenMS
- FeatureXMLFile() : FeatureXMLFile
- fetchSpectrumSwath() : OpenSwathScoring
- FIAMSDataProcessor() : FIAMSDataProcessor
- FIAMSScheduler() : FIAMSScheduler
- FidHandler() : FidHandler
- field_changed_() : DataFilterDialog
- file_() : GlobalExceptionHandler
- fileChanged() : FileWatcher
- fileChanged_() : TOPPViewBase
- FileEmpty() : FileEmpty
- fileList() : File
- fileNamesValid() : TOPPASInputFileListVertex
- FileNameTooLong() : FileNameTooLong
- fileNameValid() : TOPPASInputFileDialog
- FileNotFound() : FileNotFound
- FileNotReadable() : FileNotReadable
- FileNotWritable() : FileNotWritable
- fileOpen() : QApplicationTOPP
- fileParamValidityCheck_() : TOPPBase
- FileWatcher() : FileWatcher
- fillCalibrants() : InternalCalibration
- fillChromatogramData_() : MzMLHandler
- fillComboBox_() : BaseVisualizerGUI
- fillComboBoxes_() : TOPPASIOMappingDialog
- fillData_() : MzDataHandler
- fillDensities() : PosteriorErrorProbabilityModel
- fillExtendedResidueTable_() : IntegerMassDecomposer< ValueType, DecompositionValueType >
- fillFromInputLine() : FuzzyStringComparator::StreamElement_
- fillGaps_() : CoarseIsotopePatternGenerator
- fillIDs_() : InternalCalibration
- fillIndistinguishableGroupsWithSingletons() : ProteinIdentification
- fillInputVector_() : IsobaricIsotopeCorrector
- fillIntensities() : BaseModel< D >
- fillIntensity() : BaseModel< D >
- fillLabelMasterList_() : MultiplexDeltaMassesGenerator
- fillLeft() : String , StringUtils
- fillLogDensities() : PosteriorErrorProbabilityModel
- fillLogDensitiesGumbel() : PosteriorErrorProbabilityModel
- fillRight() : String , StringUtils
- fillVectorsOfMessagePassers() : MessagePasserFactory< Label >
- filter() : GaussFilter , GaussFilterAlgorithm , MorphologicalFilter , MultiplexFilteringCentroided , MultiplexFilteringProfile , SavitzkyGolayFilter
- filterAveragineModel_() : MultiplexFiltering , MultiplexFilteringProfile
- filterByMissedCleavages() : EnzymaticDigestion
- filterByPeakWidth() : ElutionPeakDetection
- filterCCs_() : MapAlignmentAlgorithmKD
- filterContextMenu() : TOPPViewBase
- filterDecomps_() : CompNovoIdentificationBase
- filterDeisotopicMSPeak() : ProcessData
- filterDetectability() : DetectabilitySimulation
- filterEdit() : TOPPViewBase
- filterExperiment() : GaussFilter , MorphologicalFilter , SavitzkyGolayFilter
- FilterFeatureMap() : MRMFeatureFilter
- filterFeatures_() : FeatureFinderIdentificationAlgorithm
- filterFeaturesFinalizeAssay_() : FeatureFinderIdentificationAlgorithm
- FilterFunctor() : FilterFunctor
- filterHits_() : MetaDataBrowser
- filterHitsByRank() : IDFilter
- filterHitsByScore() : IDFilter
- filterPeakMap() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
- filterPeakPositions_() : MultiplexFiltering
- filterPeakSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
- filterPeakSpectrumForTopNInJumpingWindow() : WindowMower
- filterPeakSpectrumForTopNInSlidingWindow() : WindowMower
- filterPeptideCorrelation_() : MultiplexFiltering , MultiplexFilteringProfile
- filterPeptideEvidences() : IDFilter::DigestionFilter , IDFilter
- FilterPeptideEvidences() : IDFilter
- filterPeptideIds_() : PrecursorIonSelection
- filterPeptidesByCharge() : IDFilter
- filterPeptidesByLength() : IDFilter
- filterPeptidesByMZ() : IDFilter
- filterPeptidesByMZError() : IDFilter
- filterPeptidesByRT() : IDFilter
- filterPeptidesByRTPredictPValue() : IDFilter
- filterPeptideSequences() : IDFilter::PeptideDigestionFilter
- filterPermuts_() : CompNovoIdentificationBase
- filterPrecursorsByTags() : OPXLHelper
- filterProtIds_() : PrecursorIonSelection
- filterQueryMatchesByScore() : IDFilter
- filterRange() : MorphologicalFilter
- filterSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower
- filterTaxonomyIdentifier_() : PrecursorIonSelectionPreprocessing
- finalizeCluster() : QTCluster
- find() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , File
- find_AC() : MS2Info
- find_closest_mz_match() : ProcessData
- find_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_feature_by_ID() : LCMS
- find_LC_MS_by_ID() : LCMS
- find_match_by_id() : SHFeature
- find_Modification() : MS2Info
- find_nearest() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_nearest_if() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_retention_time() : ProcessData
- find_true_peak() : LCElutionPeak
- find_within_range() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- findBestIsotopeFit_() : FeatureFinderAlgorithmPicked
- findByIndex() : SpectrumLookup
- findByNativeID() : SpectrumLookup
- findByReference() : SpectrumLookup
- findByRegExpMatch_() : SpectrumLookup
- findByRT() : SpectrumLookup
- findByScanNumber() : SpectrumLookup
- findClosestPeak_() : PeakPickerMRM
- findCommonMetaKeys() : MetaInfoInterfaceUtils
- findComponentFeature_() : AbsoluteQuantitationStandards
- findConnectedComponent() : PeptideProteinResolution
- findDatabase() : File
- findDecoyString() : DecoyHelper
- findDoc() : File
- findEntry() : Param::ParamNode
- findEntry_() : TOPPBase
- findEntryRecursive() : Param::ParamNode
- findExecutable() : File
- findFeaturesToMerge() : MS1FeatureMerger
- findFirst() : Param
- findFixedAndTermResidues_() : MRMDecoy
- findFixedResidues() : MRMDecoy
- findFixedResidues_() : MRMDecoy
- findHit() : ProteinIdentification
- findIndexListOffset() : IndexedMzMLDecoder
- findIsotope_() : FeatureFinderAlgorithmPicked
- findLargestPeak() : MRMTransitionGroupPicker
- findLocalExtrema() : ElutionPeakDetection
- findLocalFeatures_() : FeatureFindingMetabo
- findMatches() : ModificationDefinitionsSet
- findMatchingPeaks_() : TwoDOptimization
- findMaxByIntPeak() : MassTrace
- findMaxima() : PeakPickerMaxima
- findMinimalProteinList() : PSProteinInference
- findModificationIndex() : ModificationsDB
- findMS2Fragment() : MS2ConsensusSpectrum
- findMzKey() : BackgroundControl
- findNearest() : MSChromatogram , MSSpectrum , MZTrafoModel
- findNearestNeighbour_() : GridBasedClustering< Metric >
- findNearestPeak_() : Spectrum2DCanvas
- findNext() : AhoCorasickAmbiguous , Param
- findNode() : Param::ParamNode
- findParentOf() : Param::ParamNode
- findPeakAtPosition_() : Spectrum1DCanvas
- findPeptide() : TransitionHelper
- findPeptideEntry_() : ProteinResolver
- findPosAtPeakHeightPercent_() : PeakIntegrator
- findR() : RWrapper
- findReferenceChannel_() : IsobaricNormalizer
- findRelevantFilePaths_() : QuantitativeExperimentalDesign
- findScoreType() : IdentificationData
- findScript() : RWrapper
- findSearchParameters_() : MzIdentMLDOMHandler
- findSiblingTOPPExecutable() : File
- findStream_() : LogStream
- findTopUniqueHits_() : XFDRAlgorithm
- findTrKey() : BackgroundControl
- findWidestPeakIndices() : MRMTransitionGroupPicker
- findWinner_() : PeakIntensityPredictor
- FineIsotopePatternGenerator() : FineIsotopePatternGenerator
- finishAdding_() : BaseVisualizerGUI , Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- finishContextMenu_() : Spectrum2DCanvas
- finishHoveringEdge() : TOPPASScene , TOPPASVertex
- finishTOPPToolExecution() : TOPPViewBase
- firstExec() : TOPPASIOMappingDialog
- firstToUpper() : String , StringUtils
- fit() : EGHTraceFitter , GaussTraceFitter , GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , PosteriorErrorProbabilityModel , TraceFitter
- fit1d() : BiGaussFitter1D , EGHFitter1D , EmgFitter1D , ExtendedIsotopeFitter1D , Fitter1D , GaussFitter1D , IsotopeFitter1D
- fitCalibration() : AbsoluteQuantitation
- fitElutionModels() : ElutionModelFitter
- fitEMGPeakModel() : EmgGradientDescent
- fitGumbelGauss() : PosteriorErrorProbabilityModel
- fitLOWESS() : MapAlignmentAlgorithmKD
- fitModel() : TransformationDescription
- fitOffset_() : MaxLikeliFitter1D
- fitPeakShape_() : PeakPickerCWT
- fitRT_() : EmgScoring , FeatureFinderAlgorithmMRM
- Fitter1D() : Fitter1D
- fitWeighted() : GumbelDistributionFitter , GumbelMaxLikelihoodFitter
- fixRange() : Spectrum1DGoToDialog , Spectrum2DGoToDialog
- flipLayer() : Spectrum1DCanvas
- flippedLayersExist() : Spectrum1DCanvas
- flush() : IChromatogramsWriter , ISpectraWriter , LogStream , MSDataSqlConsumer
- focusByTab() : TOPPASBase
- focusInEvent() : OpenMSLineEdit
- focusOutEvent() : OpenMSLineEdit , Spectrum3DOpenGLCanvas , SpectrumCanvas
- followRedirect() : MascotRemoteQuery
- followUpValid() : IsobaricChannelExtractor::PuritySate_
- forwardDump() : HiddenMarkovModel
- forwardTOPPOutput() : TOPPASToolVertex
- FoundProteinFunctor() : PeptideIndexing::FoundProteinFunctor
- FragmentAnnotationDetail_() : RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
- fragmentAnnotationDetailsToPHFA() : RNPxlFragmentAnnotationHelper
- FragmentMassError() : FragmentMassError
- fromCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabNullAbleInterface , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
- fromConsensusMap() : ExperimentalDesign
- fromFeatureMap() : ExperimentalDesign
- fromIdentifications() : ExperimentalDesign
- fromLocalFile() : TOPPASResource
- fromNative_() : StringManager
- fromQStringList() : StringListUtils
- fromString() : AASequence , DataFilters::DataFilter , MultiGradient , NASequence
- front() : ConstRefVector< ContainerT >
- FTPeakDetectController() : FTPeakDetectController
- fullDimensionName() : Peak2D
- fullDimensionNameMZ() : Peak2D
- fullDimensionNameRT() : Peak2D
- fullDimensionUnit() : Peak2D
- fullDimensionUnitMZ() : Peak2D
- fullDimensionUnitRT() : Peak2D
- FullSwathFileConsumer() : FullSwathFileConsumer
- function_() : GlobalExceptionHandler
- Functor() : GumbelMaxLikelihoodFitter::Functor< _Scalar, NX, NY >
- FuzzyStringComparator() : FuzzyStringComparator