| OpenMS 2.5.0

FeatureFinderMultiplexAlgorithm Member List

This is the complete list of members for FeatureFinderMultiplexAlgorithm, including all inherited members.

centroided_ | FeatureFinderMultiplexAlgorithm | protected
charge_max_ | FeatureFinderMultiplexAlgorithm | protected
charge_min_ | FeatureFinderMultiplexAlgorithm | protected
check_defaults_ | DefaultParamHandler | protected
CMD enum value | ProgressLogger |
consensus_map_ | FeatureFinderMultiplexAlgorithm | protected
correctPeptideIntensities_(const MultiplexIsotopicPeakPattern &pattern, std::map< size_t, SplinePackage > &spline_chromatograms, const std::vector< double > &rt_peptide, std::vector< double > &intensity_peptide) | FeatureFinderMultiplexAlgorithm | protected
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
determinePeptideIntensitiesCentroided_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteCentroided > &satellites) | FeatureFinderMultiplexAlgorithm | protected
determinePeptideIntensitiesProfile_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites) | FeatureFinderMultiplexAlgorithm | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
exp_blacklist_ | FeatureFinderMultiplexAlgorithm | protected
exp_centroid_ | FeatureFinderMultiplexAlgorithm | protected
exp_profile_ | FeatureFinderMultiplexAlgorithm | protected
feature_map_ | FeatureFinderMultiplexAlgorithm | protected
FeatureFinderMultiplexAlgorithm() | FeatureFinderMultiplexAlgorithm |
generateMapsCentroided_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, std::vector< std::map< int, GridBasedCluster > > &cluster_results) | FeatureFinderMultiplexAlgorithm | protected
generateMapsProfile_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, const std::vector< std::map< int, GridBasedCluster > > &cluster_results) | FeatureFinderMultiplexAlgorithm | protected
generatePeakPatterns_(int charge_min, int charge_max, int peaks_per_peptide_max, const std::vector< MultiplexDeltaMasses > &mass_pattern_list) | FeatureFinderMultiplexAlgorithm | protected
getBlacklist() | FeatureFinderMultiplexAlgorithm |
getConsensusMap() | FeatureFinderMultiplexAlgorithm |
getDefaults() const | DefaultParamHandler |
getFeatureMap() | FeatureFinderMultiplexAlgorithm |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
isotopes_per_peptide_max_ | FeatureFinderMultiplexAlgorithm | protected
isotopes_per_peptide_min_ | FeatureFinderMultiplexAlgorithm | protected
label_mass_shift_ | FeatureFinderMultiplexAlgorithm | protected
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
prog_log_ | FeatureFinderMultiplexAlgorithm | protected
progress_ | FeatureFinderMultiplexAlgorithm | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
run(MSExperiment &exp, bool progress) | FeatureFinderMultiplexAlgorithm |
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutable protected
updateMembers_() | DefaultParamHandler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProgressLogger() | ProgressLogger |