| OpenMS 2.5.0

ChromatogramExtractor Member List

This is the complete list of members for ChromatogramExtractor, including all inherited members.

CMD enum value | ProgressLogger |
current_logger_ | ProgressLogger | mutable protected
endProgress() const | ProgressLogger |
extract_id_(TransitionExpT &transition_exp_used, const String &id, int &prec_charge) | ChromatogramExtractor | private static
extract_value_bartlett(const SpectrumT &input, const double mz, Size &peak_idx, double &integrated_intensity, const double extract_window, const bool ppm) | ChromatogramExtractor | inline
extract_value_tophat(const SpectrumT &input, const double mz, Size &peak_idx, double &integrated_intensity, const double extract_window, const bool ppm) | ChromatogramExtractor | inline
extractChromatograms(const ExperimentT &input, ExperimentT &output, OpenMS::TargetedExperiment &transition_exp, double mz_extraction_window, bool ppm, TransformationDescription trafo, double rt_extraction_window, const String &filter) | ChromatogramExtractor | inline
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, const std::vector< ExtractionCoordinates > &extraction_coordinates, double mz_extraction_window, bool ppm, const String &filter) | ChromatogramExtractor | inline
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, const std::vector< ExtractionCoordinates > &extraction_coordinates, double mz_extraction_window, bool ppm, double im_extraction_window, const String &filter) | ChromatogramExtractor | inline
ExtractionCoordinates typedef | ChromatogramExtractor |
getFilterNr_(const String &filter) | ChromatogramExtractor | private
getLogType() const | ProgressLogger |
GUI enum value | ProgressLogger |
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const ProgressLogger &other) | ProgressLogger |
outsideExtractionWindow_(const ReactionMonitoringTransition &transition, double current_rt, const TransformationDescription &trafo, double rt_extraction_window) | ChromatogramExtractor | private
PeptideRTMap_ | ChromatogramExtractor | private
populatePeptideRTMap_(OpenMS::TargetedExperiment &transition_exp, double rt_extraction_window) | ChromatogramExtractor | private
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenMS::TargetedExperiment &transition_exp, const double rt_extraction_window, const bool ms1=false, const int ms1_isotopes=0) | ChromatogramExtractor | static
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenSwath::LightTargetedExperiment &transition_exp_used, const double rt_extraction_window, const bool ms1=false, const int ms1_isotopes=0) | ChromatogramExtractor | static
prepareSpectra_(SpectrumSettingsT &settings, std::vector< ChromatogramT > &chromatograms, OpenMS::TargetedExperiment &transition_exp) | ChromatogramExtractor | inline private
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
return_chromatogram(const std::vector< OpenSwath::ChromatogramPtr > &chromatograms, const std::vector< ChromatogramExtractor::ExtractionCoordinates > &coordinates, TransitionExpT &transition_exp_used, SpectrumSettings settings, std::vector< OpenMS::MSChromatogram > &output_chromatograms, bool ms1, double im_extraction_width=0.0) | ChromatogramExtractor | inline static
setLogType(LogType type) const | ProgressLogger |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
type_ | ProgressLogger | mutable protected
~ProgressLogger() | ProgressLogger |