OpenMS: Member List

| OpenMS 2.5.0

FeatureXMLFile Member List

This is the complete list of members for FeatureXMLFile, including all inherited members.

accession_to_id_ | FeatureXMLFile | protected
ActionMode enum name | XMLHandler | protected
asBool_(const String &in) | XMLHandler | inlineprotected
asDateTime_(String date_string) | XMLHandler | inlineprotected
asDouble_(const String &in) | XMLHandler | inlineprotected
asFloat_(const String &in) | XMLHandler | inlineprotected
asInt_(const String &in) | XMLHandler | inlineprotected
asInt_(const XMLCh *in) | XMLHandler | inlineprotected
asUInt_(const String &in) | XMLHandler | inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) override | FeatureXMLFile | protected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler | protected
CMD enum value | ProgressLogger |
current_chull_ | FeatureXMLFile | protected
current_feature_ | FeatureXMLFile | protected
current_logger_ | ProgressLogger | mutableprotected
cv_terms_ | XMLHandler | protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected
dim_ | FeatureXMLFile | protected
disable_parsing_ | FeatureXMLFile | protected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | FeatureXMLFile | protected
endProgress() const | ProgressLogger |
enforced_encoding_ | XMLFile | protected
enforceEncoding_(const String &encoding) | XMLFile | protected
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected
error(const xercesc::SAXParseException &exception) override | XMLHandler | protected
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | protected
error_message_ | XMLHandler | mutableprotected
errorString() | XMLHandler | protected
expected_size_ | FeatureXMLFile | protected
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | protected
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | protected
FeatureXMLFile() | FeatureXMLFile |
file_ | XMLHandler | protected
getLoadDetail() const | XMLHandler | protectedvirtual
getLogType() const | ProgressLogger |
getOptions() | FeatureXMLFile |
getOptions() const | FeatureXMLFile |
getVersion() const | XMLFile |
GUI enum value | ProgressLogger |
hull_position_ | FeatureXMLFile | protected
id_identifier_ | FeatureXMLFile | protected
identifier_id_ | FeatureXMLFile | protected
in_description_ | FeatureXMLFile | protected
isValid(const String &filename, std::ostream &os) | XMLFile |
last_invoke_ | ProgressLogger | mutableprotected
last_meta_ | FeatureXMLFile | protected
LD_ALLDATA enum value | XMLHandler | protected
LD_COUNTS_WITHOPTIONS enum value | XMLHandler | protected
LD_RAWCOUNTS enum value | XMLHandler | protected
LOAD enum value | XMLHandler | protected
load(const String &filename, FeatureMap &feature_map) | FeatureXMLFile |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler | protected
loadSize(const String &filename) | FeatureXMLFile |
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic
map_ | FeatureXMLFile | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
open_tags_ | XMLHandler | protected
operator=(const ProgressLogger &other) | ProgressLogger |
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
options_ | FeatureXMLFile | protected
param_ | FeatureXMLFile | protected
parse_(const String &filename, XMLHandler *handler) | XMLFile | protected
parseBuffer_(const std::string &buffer, XMLHandler *handler) | XMLFile | protected
pep_hit_ | FeatureXMLFile | protected
pep_id_ | FeatureXMLFile | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
prot_hit_ | FeatureXMLFile | protected
prot_id_ | FeatureXMLFile | protected
proteinid_to_accession_ | FeatureXMLFile | protected
recursion_depth_ | ProgressLogger | protectedstatic
reset() | XMLHandler | protected
resetMembers_() | FeatureXMLFile | protected
save_(const String &filename, XMLHandler *handler) const | XMLFile | protected
schema_location_ | XMLFile | protected
schema_version_ | XMLFile | protected
search_param_ | FeatureXMLFile | protected
setLoadDetail(const LOADDETAIL d) | XMLHandler | protectedvirtual
setLogType(LogType type) const | ProgressLogger |
setOptions(const FeatureFileOptions &) | FeatureXMLFile |
setProgress(SignedSize value) const | ProgressLogger |
size_only_ | FeatureXMLFile | protected
sm_ | XMLHandler | protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | FeatureXMLFile | protected
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
store(const String &filename, const FeatureMap &feature_map) | FeatureXMLFile |
STORE enum value | XMLHandler | protected
subordinate_feature_level_ | FeatureXMLFile | protected
type_ | ProgressLogger | mutableprotected
updateCurrentFeature_(bool create) | FeatureXMLFile | protected
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler | protected
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | protected
writeFeature_(const String &filename, std::ostream &os, const Feature &feat, const String &identifier_prefix, UInt64 identifier, UInt indentation_level) | FeatureXMLFile | protected
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level) | FeatureXMLFile | protected
writeTo(std::ostream &) | XMLHandler | protectedvirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inlineprotectedstatic
XMLFile() | XMLFile |
XMLFile(const String &schema_location, const String &version) | XMLFile |
XMLHandler(const String &filename, const String &version) | XMLHandler | protected
~FeatureXMLFile() override | FeatureXMLFile |
~ProgressLogger() | ProgressLogger |
~XMLFile() | XMLFile | virtual
~XMLHandler() override | XMLHandler | protected