| OpenMS 2.5.0

Here is a list of all class members with links to the classes they belong to:

### - b -

- b : GammaDistributionFitter::GammaDistributionFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , GumbelMaxLikelihoodFitter::GumbelDistributionFitResult
- b_ : CubicSpline2d
- B_ : EGHModel
- b_ : QuadraticRegression , SpectrumAccessQuadMZTransforming , TOFCalibration
- b_intensity_ : NucleicAcidSpectrumGenerator , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
- back() : ConstRefVector< ContainerT > , Weights
- background_subtraction_ : MRMTransitionGroupPicker
- BackgroundControl() : BackgroundControl
- backgroundController : ProcessData
- BackgroundIntensityBin() : BackgroundIntensityBin
- backgroundIntensityBinsIntens_ : SuperHirnParameters
- backgroundIntensityBinsMinBinCount_ : SuperHirnParameters
- backgroundIntensityBinsMZ_ : SuperHirnParameters
- backgroundIntensityBinsTR_ : SuperHirnParameters
- BackgroundNoise : SHFeature
- backtrack_tech : LPWrapper::SolverParam
- backward_ : HiddenMarkovModel
- base : _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
- Base : ConsensusMap , DBoundingBox< D > , DRange< D > , FeatureFinderAlgorithmIsotopeWavelet , FeatureMap
- base : IntensityIteratorWrapper< IteratorT >
- Base : Map< Key, T > , AsymmetricStatistics< RealT > , Matrix< Value > , MSExperiment , ScoreToTgtDecLabelPairs , SimplePairFinder , StablePairFinder
- Base64() : Base64
- base64 : MzMLHandlerHelper::BinaryData
- base_container_ptr_ : ConstRefVector< ContainerT >
- base_dir_ : FIAMSScheduler
- base_match_probability_ : AScore
- base_name_ : PeptideIdentification
- BaseException() : BaseException
- baseExperiment : IsobaricChannelExtractor::PuritySate_
- BaseFeature() : BaseFeature
- BaseGroupFinder() : BaseGroupFinder
- BaseLabeler() : BaseLabeler
- baseline : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
- BASELINE : MassAnalyzer
- baseline_delta_2_height : PeakIntegrator::PeakShapeMetrics
- BASELINE_REDUCTION : DataProcessing
- baseline_type_ : PeakIntegrator
- BASELINE_TYPE_BASETOBASE : PeakIntegrator
- BASELINE_TYPE_VERTICALDIVISION : PeakIntegrator
- BASELINE_TYPE_VERTICALDIVISION_MAX : PeakIntegrator
- BASELINE_TYPE_VERTICALDIVISION_MIN : PeakIntegrator
- baseloss_formula_ : Ribonucleotide
- BaseModel() : BaseModel< D >
- basename() : File
- basename_ : CachedSwathFileConsumer , MzMLSwathFileConsumer
- BASEPEAK_CHROMATOGRAM : ChromatogramSettings
- BaseSuperimposer() : BaseSuperimposer
- BaseVisualizerGUI() : BaseVisualizerGUI
- basic() : AAIndex
- basic_residues_ : IonizationSimulation
- basic_statistics_ : SpectrumAnnotator
- basicity_ : SvmTheoreticalSpectrumGenerator
- BasicProteinInferenceAlgorithm() : BasicProteinInferenceAlgorithm
- BasicStatistics : EGHModel , EmgModel , GaussModel , BasicStatistics< RealT >
- BATCH : IonSource
- batch_size_ : FeatureFinderIdentificationAlgorithm , XTandemInfile
- batchMRMFeatures() : MRMBatchFeatureSelector
- batchMRMFeaturesQMIP() : MRMBatchFeatureSelector
- batchMRMFeaturesScore() : MRMBatchFeatureSelector
- BayesianProteinInferenceAlgorithm() : BayesianProteinInferenceAlgorithm
- bb_charge_ : ProtonDistributionModel
- bb_charge_full_ : ProtonDistributionModel
- bb_charge_ion_c_term_ : ProtonDistributionModel
- bb_charge_ion_n_term_ : ProtonDistributionModel
- BC_ZERO_ENDPOINTS : BSpline2d
- BC_ZERO_FIRST : BSpline2d
- BC_ZERO_SECOND : BSpline2d
- before() : SysInfo::MemUsage
- begin() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , EmpiricalFormula , HashGrid< Cluster > , IsotopeDistribution , IsotopeWaveletTransform< PeakType >::TransSpectrum , MassTrace , Histogram< ValueType, BinSizeType > , MSExperiment , NASequence , Param , RibonucleotideDB , ScanWindow , TextFile , XCorrArrayType
- begin_ : GUIProgressLoggerImpl , ScanWindowVisualizer , StringView
- begin_right_padding_ : ContinuousWaveletTransform
- beginEnzyme() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- beginResidue() : ResidueDB
- BernNorm() : BernNorm
- best_localization : RNPxlReportRow
- best_localization_score : RNPxlReportRow
- best_search_engine_score : MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
- bestk_() : MapAlignmentAlgorithmSpectrumAlignment
- beta : OPXLDataStructs::ProteinProteinCrossLink
- beta_ : MessagePasserFactory< Label >
- beta_index : OPXLDataStructs::XLPrecursor
- beta_seq : OPXLDataStructs::XLPrecursor
- better_ : MapAlignmentAlgorithmIdentification
- bibliographic_reference_ : MSQuantifications
- BiGaussFitter1D() : BiGaussFitter1D
- BiGaussModel() : BiGaussModel
- BilinearInterpolation() : BilinearInterpolation< Key, Value >
- BimapType : ConfidenceScoring
- bin_count_ : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
- bin_data_ : MzMLHandler
- bin_masses_ : PrecursorIonSelectionPreprocessing
- bin_offset_ : TargetedSpectraExtractor::BinnedSpectrumComparator
- bin_size_ : BinnedSpectrum , Histogram< ValueType, BinSizeType > , TargetedSpectraExtractor::BinnedSpectrumComparator
- bin_sizes_ : FIAMSDataProcessor
- bin_spread_ : BinnedSpectrum
- BINARY : LPWrapper
- binary : QcMLFile::Attachment
- binary_data_array_ : MzMLValidator
- binary_data_type_ : MzMLValidator
- BinaryData : MzMLHandler , MzMLHandlerHelper::BinaryData , MzMLSpectrumDecoder
- binaryDataArrayPtrs : Chromatogram , Spectrum , OSChromatogram , OSSpectrum
- binarySearchNodes_() : ProteinResolver
- BinaryTreeNode() : BinaryTreeNode
- BindingSite_() : EnzymaticDigestionLogModel::BindingSite_
- BinnedSharedPeakCount() : BinnedSharedPeakCount
- BinnedSpectralContrastAngle() : BinnedSpectralContrastAngle
- BinnedSpectrum() : BinnedSpectrum
- BinnedSpectrumCompareFunctor() : BinnedSpectrumCompareFunctor
- BinnedSumAgreeingIntensities() : BinnedSumAgreeingIntensities
- bins_ : BinnedSpectrum , Histogram< ValueType, BinSizeType >
- binSize() : Histogram< ValueType, BinSizeType >
- binSpectrum_() : BinnedSpectrum
- binValue() : Histogram< ValueType, BinSizeType >
- biological_rng_ : SimRandomNumberGenerator
- BIon : NASequence , Residue
- BIonMinusH20 : NASequence , Residue
- BIonMinusNH3 : NASequence , Residue
- bioreplicate_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
- BIRD : Precursor
- blacklist_ : MultiplexFiltering
- blacklistPeak_() : MultiplexFiltering
- blank_features : PeptideAndProteinQuant::Statistics
- blind_ : InspectInfile
- blocks_list_ : TOPPASBase
- BORDER_LENGTH : SVMWrapper
- border_length_ : SVMWrapper
- borderPoint_() : TOPPASEdge
- BOTH : Compomer
- BOTTOM : AxisPainter
- bottom_axis_ : HistogramWidget
- bound_() : LogStream
- boundaries_ : MultiplexFilteringProfile
- boundary_ : MascotInfile , MascotRemoteQuery
- boundary_selection_method_ : MRMTransitionGroupPicker
- BoundaryCondition : BSpline2d
- bounding_box_ : Annotation1DItem , GridBasedCluster
- boundingBox() : Annotation1DItem
- boundingRect() : TOPPASEdge , TOPPASInputFileListVertex , TOPPASMergerVertex , TOPPASOutputFileListVertex , TOPPASSplitterVertex , TOPPASToolVertex , TOPPASVertex
- Box : FeatureFinderAlgorithmIsotopeWavelet , IsotopeWaveletTransform< PeakType >
- branching_tech : LPWrapper::SolverParam
- breakpoint_set_ : TOPPASToolVertex
- breakString() : ConsoleUtils
- breakString_() : ConsoleUtils
- bringInMetaStats_() : LayerStatisticsDialog
- browseDefaultPath_() : TOPPViewPrefDialog
- browseTempPath_() : TOPPViewPrefDialog
- brush_color_ : TOPPASVertex
- bs_library_ : TargetedSpectraExtractor::BinnedSpectrumComparator
- bseries_score : OpenSwath_Scores
- BSpline2d() : BSpline2d
- bspline_ : PeakWidthEstimator
- bucketFilter_() : MapAlignmentAlgorithmSpectrumAlignment
- bucketsize_ : MapAlignmentAlgorithmSpectrumAlignment
- buffer_ : HistogramWidget , SpectrumCanvas , TextFile
- BufferOverflow() : BufferOverflow
- buildAnalysisCollection_() : MzIdentMLDOMHandler
- buildAnalysisDataCollection_() : MzIdentMLDOMHandler
- buildAnalysisProtocolCollection_() : MzIdentMLDOMHandler
- buildAnalysisSoftwareList_() : MzIdentMLDOMHandler
- buildCandidates() : OPXLHelper
- buildCvList_() : MzIdentMLDOMHandler
- buildEnclosedCV_() : MzIdentMLDOMHandler
- buildFragmentAnnotations() : OPXLHelper
- buildGraph() : PeptideProteinResolution
- buildGraph_() : IDBoostGraph
- buildGraphWithRunInfo_() : IDBoostGraph
- buildingISDGroups_() : ProteinResolver
- buildingMSDGroups_() : ProteinResolver
- buildInputDataCollection_() : MzIdentMLDOMHandler
- buildPeptideIDs() : OPXLHelper
- buildResidueNames_() : ResidueDB
- buildRoundPackages() : TOPPASVertex
- buildSequenceCollection_() : MzIdentMLDOMHandler
- buildTree() : MapAlignmentAlgorithmTreeGuided
- buildUrl_() : MascotRemoteQuery
- buildVectorIndex_() : IsobaricNormalizer
- buttongroup_ : MetaInfoVisualizer
- ByteOrder : Base64
- BYTEORDER_BIGENDIAN : Base64
- BYTEORDER_LITTLEENDIAN : Base64
- bzerror_ : Bzip2Ifstream
- bzip2_ : Bzip2InputStream
- bzip2file_ : Bzip2Ifstream
- Bzip2Ifstream() : Bzip2Ifstream
- Bzip2InputStream() : Bzip2InputStream