| OpenMS 2.5.0

MzTab Member List

This is the complete list of members for MzTab, including all inherited members.

addMetaInfoToOptionalColumns(const std::set< String > &keys, std::vector< MzTabOptionalColumnEntry > &opt, const String &id, const MetaInfoInterface &meta) | MzTab | static
addPepEvidenceToRows(const std::vector< PeptideEvidence > &peptide_evidences, MzTabPSMSectionRow &row, MzTabPSMSectionRows &rows) | MzTab | static
checkSequenceUniqueness_(const std::vector< PeptideIdentification > &curr_pep_ids) | MzTab | protected static
comment_rows_ | MzTab | protected
empty_rows_ | MzTab | protected
exportConsensusMapToMzTab(const ConsensusMap &consensus_map, const String &filename, const bool first_run_inference_only, const bool export_unidentified_features, const bool export_unassigned_ids, const bool export_subfeatures, const bool export_empty_pep_ids=false, const String &title="ConsensusMap export from OpenMS") | MzTab | static
exportFeatureMapToMzTab(const FeatureMap &feature_map, const String &filename) | MzTab | static
exportIdentificationsToMzTab(const std::vector< ProteinIdentification > &prot_ids, const std::vector< PeptideIdentification > &peptide_ids, const String &filename, bool first_run_inference_only, std::map< std::pair< size_t, size_t >, size_t > &map_run_fileidx_2_msfileidx, std::map< String, size_t > &idrun_2_run_index, bool export_empty_pep_ids=false) | MzTab | static
extractModificationListFromAASequence(const AASequence &aas, const std::vector< String > &fixed_mods=std::vector< String >()) | MzTab | static
generateMzTabStringFromFixedModifications(const std::vector< String > &mods) | MzTab | static
generateMzTabStringFromModifications(const std::vector< String > &mods) | MzTab | static
generateMzTabStringFromVariableModifications(const std::vector< String > &mods) | MzTab | static
getCommentRows() const | MzTab |
getEmptyRows() const | MzTab |
getMetaData() const | MzTab |
getNucleicAcidOptionalColumnNames() const | MzTab |
getNucleicAcidSectionRows() const | MzTab |
getOligonucleotideOptionalColumnNames() const | MzTab |
getOligonucleotideSectionRows() const | MzTab |
getOptionalColumnNames_(const SectionRows &rows) const | MzTab | inline protected
getOSMOptionalColumnNames() const | MzTab |
getOSMSectionRows() const | MzTab |
getPeptideOptionalColumnNames() const | MzTab |
getPeptideSectionRows() const | MzTab |
getProteinOptionalColumnNames() const | MzTab |
getProteinSectionRows() const | MzTab |
getPSMOptionalColumnNames() const | MzTab |
getPSMSectionRows() const | MzTab |
getSmallMoleculeOptionalColumnNames() const | MzTab |
getSmallMoleculeSectionRows() const | MzTab |
meta_data_ | MzTab | protected
MzTab() | MzTab |
nucleic_acid_data_ | MzTab | protected
oligonucleotide_data_ | MzTab | protected
osm_data_ | MzTab | protected
peptide_data_ | MzTab | protected
protein_data_ | MzTab | protected
psm_data_ | MzTab | protected
setCommentRows(const std::map< Size, String > &com) | MzTab |
setEmptyRows(const std::vector< Size > &empty) | MzTab |
setMetaData(const MzTabMetaData &md) | MzTab |
setNucleicAcidSectionRows(const MzTabNucleicAcidSectionRows &nasd) | MzTab |
setOligonucleotideSectionRows(const MzTabOligonucleotideSectionRows &onsd) | MzTab |
setOSMSectionRows(const MzTabOSMSectionRows &osd) | MzTab |
setPeptideSectionRows(const MzTabPeptideSectionRows &psd) | MzTab |
setProteinSectionRows(const MzTabProteinSectionRows &psd) | MzTab |
setPSMSectionRows(const MzTabPSMSectionRows &psd) | MzTab |
setSmallMoleculeSectionRows(const MzTabSmallMoleculeSectionRows &smsd) | MzTab |
small_molecule_data_ | MzTab | protected
~MzTab() | MzTab | virtual