| OpenMS 2.5.0

Public Member Functions | List of all members
DeNovoIdentification Class Referenceabstract

Base class for de novo identification. More...

`#include <OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h>`

Inheritance diagram for DeNovoIdentification:

## Public Member Functions

DeNovoIdentification & | operator= (const DeNovoIdentification &rhs)
| assignment operator More...
virtual void | getIdentifications (std::vector< PeptideIdentification > &ids, const PeakMap &exp)=0
| performs an ProteinIdentification run on a PeakMap More...
virtual void | getIdentification (PeptideIdentification &id, const PeakSpectrum &spectrum)=0
| performs an ProteinIdentification run on a PeakSpectrum More...
Constructors and destructors
| DeNovoIdentification ()
| default constructor More...
| ~DeNovoIdentification () override
| destructor More...
| DeNovoIdentification (const DeNovoIdentification &rhs)
| copy constructor More...
Public Member Functions inherited from DefaultParamHandler
| DefaultParamHandler (const String &name)
| Constructor with name that is displayed in error messages. More...
| DefaultParamHandler (const DefaultParamHandler &rhs)
| Copy constructor. More...
virtual | ~DefaultParamHandler ()
| Destructor. More...
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs)
| Assignment operator. More...
virtual bool | operator== (const DefaultParamHandler &rhs) const
| Equality operator. More...
void | setParameters (const Param &param)
| Sets the parameters. More...
const Param & | getParameters () const
| Non-mutable access to the parameters. More...
const Param & | getDefaults () const
| Non-mutable access to the default parameters. More...
const String & | getName () const
| Non-mutable access to the name. More...
void | setName (const String &name)
| Mutable access to the name. More...
const std::vector< String > & | getSubsections () const
| Non-mutable access to the registered subsections. More...

## Additional Inherited Members

Protected Member Functions inherited from DefaultParamHandler
virtual void | updateMembers_ ()
| This method is used to update extra member variables at the end of the setParameters() method. More...
void | defaultsToParam_ ()
| Updates the parameters after the defaults have been set in the constructor. More...
Protected Attributes inherited from DefaultParamHandler
Param | param_
| Container for current parameters. More...
Param | defaults_
| Container for default parameters. This member should be filled in the constructor of derived classes! More...
std::vector< String > | subsections_
| Container for registered subsections. This member should be filled in the constructor of derived classes! More...
String | error_name_
| Name that is displayed in error messages during the parameter checking. More...
bool | check_defaults_
| If this member is set to false no checking if parameters in done;. More...
bool | warn_empty_defaults_
| If this member is set to false no warning is emitted when defaults are empty;. More...

## Detailed Description

Base class for de novo identification.

## Constructor & Destructor Documentation

## ◆ DeNovoIdentification() [1/2]

DeNovoIdentification | ( |  | ) |

default constructor

## ◆ ~DeNovoIdentification()

~DeNovoIdentification | ( |  | ) |

override

destructor

## ◆ DeNovoIdentification() [2/2]

DeNovoIdentification | ( | const DeNovoIdentification & | rhs | ) |

copy constructor

## Member Function Documentation

## ◆ getIdentification()

virtual void getIdentification | ( | PeptideIdentification & | id,
|  | const PeakSpectrum & | spectrum
| ) |  |

pure virtual

performs an ProteinIdentification run on a PeakSpectrum

## ◆ getIdentifications()

virtual void getIdentifications | ( | std::vector< PeptideIdentification > & | ids,
|  | const PeakMap & | exp
| ) |  |

pure virtual

performs an ProteinIdentification run on a PeakMap

## ◆ operator=()

DeNovoIdentification& operator= | ( | const DeNovoIdentification & | rhs | ) |

assignment operator