| OpenMS 2.5.0

FalseDiscoveryRate Member List

This is the complete list of members for FalseDiscoveryRate, including all inherited members.

apply(std::vector< PeptideIdentification > &fwd_ids, std::vector< PeptideIdentification > &rev_ids) const | FalseDiscoveryRate |
apply(std::vector< PeptideIdentification > &id) const | FalseDiscoveryRate |
apply(std::vector< ProteinIdentification > &fwd_ids, std::vector< ProteinIdentification > &rev_ids) const | FalseDiscoveryRate |
apply(std::vector< ProteinIdentification > &ids) const | FalseDiscoveryRate |
applyBasic(std::vector< PeptideIdentification > &ids) | FalseDiscoveryRate |
applyBasic(ConsensusMap &cmap, bool use_unassigned_peptides=true) | FalseDiscoveryRate |
applyBasic(ProteinIdentification &id, bool groups_too=true) | FalseDiscoveryRate |
applyEstimated(std::vector< ProteinIdentification > &ids) const | FalseDiscoveryRate |
applyEvaluateProteinIDs(const std::vector< ProteinIdentification > &ids, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2) | FalseDiscoveryRate |
applyEvaluateProteinIDs(const ProteinIdentification &ids, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2) | FalseDiscoveryRate |
applyToQueryMatches(IdentificationData &id_data, IdentificationData::ScoreTypeRef score_ref) const | FalseDiscoveryRate |
calculateEstimatedQVal_(std::map< double, double > &scores_to_FDR, ScoreToTgtDecLabelPairs &scores_labels, bool higher_score_better) const | FalseDiscoveryRate | private
calculateFDRBasic_(std::map< double, double > &scores_to_FDR, ScoreToTgtDecLabelPairs &scores_labels, bool qvalue, bool higher_score_better) const | FalseDiscoveryRate | private
calculateFDRs_(std::map< double, double > &score_to_fdr, std::vector< double > &target_scores, std::vector< double > &decoy_scores, bool q_value, bool higher_score_better) const | FalseDiscoveryRate | private
check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
diffEstimatedEmpirical_(const ScoreToTgtDecLabelPairs &scores_labels, double pepCutoff=1.0) const | FalseDiscoveryRate | private
error_name_ | DefaultParamHandler | protected
FalseDiscoveryRate() | FalseDiscoveryRate |
FalseDiscoveryRate(const FalseDiscoveryRate &) | FalseDiscoveryRate | private
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
handleQueryMatch_(IdentificationData::QueryMatchRef match_ref, IdentificationData::ScoreTypeRef score_ref, std::vector< double > &target_scores, std::vector< double > &decoy_scores, std::map< IdentificationData::IdentifiedMoleculeRef, bool > &molecule_to_decoy, std::map< IdentificationData::QueryMatchRef, double > &match_to_score) const | FalseDiscoveryRate | private
operator=(const FalseDiscoveryRate &) | FalseDiscoveryRate | private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
rocN(const std::vector< PeptideIdentification > &ids, Size fp_cutoff) const | FalseDiscoveryRate |
rocN(const std::vector< PeptideIdentification > &ids, Size fp_cutoff, const String &identifier) const | FalseDiscoveryRate |
rocN(const ConsensusMap &ids, Size fp_cutoff) const | FalseDiscoveryRate |
rocN(const ConsensusMap &ids, Size fp_cutoff, const String &identifier) const | FalseDiscoveryRate |
rocN_(const ScoreToTgtDecLabelPairs &scores_labels, Size fpCutoff=50) const | FalseDiscoveryRate | private
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
subsections_ | DefaultParamHandler | protected
trapezoidal_area(double x1, double x2, double y1, double y2) const | FalseDiscoveryRate | private
trapezoidal_area_xEqy(double exp1, double exp2, double act1, double act2) const | FalseDiscoveryRate | private
updateMembers_() | DefaultParamHandler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual