| OpenMS 2.5.0

SpectrumMetaDataLookup Member List

This is the complete list of members for SpectrumMetaDataLookup, including all inherited members.

addEntry_(Size index, double rt, Int scan_number, const String &native_id) | SpectrumLookup | protected
addMissingRTsToPeptideIDs(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false) | SpectrumMetaDataLookup | static
addMissingSpectrumReferences(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false, bool override_spectra_data=false, bool override_spectra_references=false, std::vector< ProteinIdentification > proteins=std::vector< ProteinIdentification >()) | SpectrumMetaDataLookup | static
addReferenceFormat(const String &regexp) | SpectrumLookup |
default_scan_regexp | SpectrumLookup | static
empty() const | SpectrumLookup |
extractScanNumber(const String &native_id, const boost::regex &scan_regexp, bool no_error=false) | SpectrumLookup | static
extractScanNumber(const String &native_id, const String &native_id_type_accession) | SpectrumLookup | static
findByIndex(Size index, bool count_from_one=false) const | SpectrumLookup |
findByNativeID(const String &native_id) const | SpectrumLookup |
findByReference(const String &spectrum_ref) const | SpectrumLookup |
findByRegExpMatch_(const String &spectrum_ref, const String &regexp, const boost::smatch &match) const | SpectrumLookup | protected
findByRT(double rt) const | SpectrumLookup |
findByScanNumber(Size scan_number) const | SpectrumLookup |
getSpectrumMetaData(Size index, SpectrumMetaData &meta) const | SpectrumMetaDataLookup |
getSpectrumMetaData(const MSSpectrum &spectrum, SpectrumMetaData &meta, const boost::regex &scan_regexp=boost::regex(), const std::map< Size, double > &precursor_rts=(std::map< Size, double >())) | SpectrumMetaDataLookup | static
getSpectrumMetaData(const String &spectrum_ref, SpectrumMetaData &meta, MetaDataFlags flags=MDF_ALL) const | SpectrumMetaDataLookup |
ids_ | SpectrumLookup | protected
MDF_ALL | SpectrumMetaDataLookup | static
MDF_MSLEVEL | SpectrumMetaDataLookup | static
MDF_NATIVEID | SpectrumMetaDataLookup | static
MDF_PRECURSORCHARGE | SpectrumMetaDataLookup | static
MDF_PRECURSORMZ | SpectrumMetaDataLookup | static
MDF_PRECURSORRT | SpectrumMetaDataLookup | static
MDF_RT | SpectrumMetaDataLookup | static
MDF_SCANNUMBER | SpectrumMetaDataLookup | static
metadata_ | SpectrumMetaDataLookup | protected
MetaDataFlags typedef | SpectrumMetaDataLookup |
n_spectra_ | SpectrumLookup | protected
operator=(const SpectrumMetaDataLookup &) | SpectrumMetaDataLookup | private
readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp, bool get_precursor_rt=false) | SpectrumMetaDataLookup | inline
OpenMS::SpectrumLookup::readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp) | SpectrumLookup | inline
reference_formats | SpectrumLookup |
regexp_name_list_ | SpectrumLookup | protected
regexp_names_ | SpectrumLookup | protected static
rt_tolerance | SpectrumLookup |
rts_ | SpectrumLookup | protected
scan_regexp_ | SpectrumLookup | protected
scans_ | SpectrumLookup | protected
setScanRegExp_(const String &scan_regexp) | SpectrumLookup | protected
setSpectraDataRef(const String &spectra_data) | SpectrumMetaDataLookup | inline
spectra_data_ref | SpectrumMetaDataLookup | protected
SpectrumLookup() | SpectrumLookup |
SpectrumMetaDataLookup() | SpectrumMetaDataLookup | inline
SpectrumMetaDataLookup(const SpectrumMetaDataLookup &) | SpectrumMetaDataLookup | private
~SpectrumLookup() | SpectrumLookup | virtual
~SpectrumMetaDataLookup() override | SpectrumMetaDataLookup | inline