| OpenMS 2.5.0

QCMerger

Merges two qcml files together.

pot. predecessor tools | QCCalculator | pot. successor tools
QCCalculator
QCShrinker

The two or more given files (see parameter `in`) are merged. If a run/set exisits in several files, the quality parameters of these are merged as well. Several runs from qcml files can be comprised in a set.

- `setname` If the runs of the given input files are to be comprised in a set, this will be the name of the set.

Output is in qcML format (see parameter `out`) which can be viewed directly in a modern browser (chromium, firefox, safari).

The command line parameters of this tool are:

    QCMerger -- Merges two qcml files together.

    Full documentation: http://www.openms.de/documentation/UTILS_QCMerger.html

    Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

    To cite OpenMS:

      Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

    To cite QCMerger:

      Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P,  Martens, L. qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments. Molecular & Cellular Proteomics 2014; 13(8). doi:10.1074/mcp.M113.035907.

    Usage:

      QCMerger <options>

    Options (mandatory options marked with '*'):

      -in <files>*       List of qcml files to be merged. (valid formats: 'qcML')

      -out <file>*       Output extended/reduced qcML file (valid formats: 'qcML')

      -setname <string>  Use only when all given qcml files belong to one set, which will be held under the given

                         name.

    Common UTIL options:

      -ini <file>        Use the given TOPP INI file

      -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')

      -write_ini <file>  Writes the default configuration file

      --help             Shows options

      --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+QCMerger Merges two qcml files together.
version 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1 Instance '1' section for 'QCMerger'
in[] List of qcml files to be merged.input file*.qcML
out Output extended/reduced qcML file output file*.qcML
setname Use only when all given qcml files belong to one set, which will be held under the given name.
log Name of log file (created only when specified)
debug 0 Sets the debug level
threads 1 Sets the number of threads allowed to be used by the TOPP tool
no_progress false Disables progress logging to command line true,false
force false Overwrite tool specific checks.true,false
test false Enables the test mode (needed for internal use only)true,false