| OpenMS 2.5.0

OfflinePrecursorIonSelection Member List

This is the complete list of members for OfflinePrecursorIonSelection, including all inherited members.

calculateXICs_(const FeatureMap &features, const std::vector< std::vector< std::pair< Size, Size > > > &mass_ranges, const PeakMap &experiment, const std::set< Int > &charges_set, std::vector< std::vector< std::pair< Size, double > > > &xics) | OfflinePrecursorIonSelection | private
check_defaults_ | DefaultParamHandler | protected
checkMassRanges_(std::vector< std::vector< std::pair< Size, Size > > > &mass_ranges, const PeakMap &experiment) | OfflinePrecursorIonSelection | private
createProteinSequenceBasedLPInclusionList(String include, String rt_model_file, String pt_model_file, FeatureMap &precursors) | OfflinePrecursorIonSelection |
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
ExclusionListType_ typedef | OfflinePrecursorIonSelection | private
getDefaults() const | DefaultParamHandler |
getLPSolver() | OfflinePrecursorIonSelection | inline
getMassRanges(const FeatureMap &features, const PeakMap &experiment, std::vector< std::vector< std::pair< Size, Size > > > &indices) | OfflinePrecursorIonSelection |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
IndexTriple typedef | OfflinePrecursorIonSelection |
makePrecursorSelectionForKnownLCMSMap(const FeatureMap &features, const PeakMap &experiment, PeakMap &ms2, std::set< Int > &charges_set, bool feature_based) | OfflinePrecursorIonSelection |
OfflinePrecursorIonSelection() | OfflinePrecursorIonSelection |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
setLPSolver(LPWrapper::SOLVER solver) | OfflinePrecursorIonSelection | inline
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
solver_ | OfflinePrecursorIonSelection | private
subsections_ | DefaultParamHandler | protected
updateExclusionList_(ExclusionListType_ &exclusion_list) const | OfflinePrecursorIonSelection | private
updateMembers_() | DefaultParamHandler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~OfflinePrecursorIonSelection() override | OfflinePrecursorIonSelection |