| OpenMS 2.5.0

AbsoluteQuantitation Member List

This is the complete list of members for AbsoluteQuantitation, including all inherited members.

AbsoluteQuantitation() | AbsoluteQuantitation |
applyCalibration(const Feature &component, const Feature &IS_component, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation |
calculateBias(const double &actual_concentration, const double &calculated_concentration) | AbsoluteQuantitation |
calculateBiasAndR(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, std::vector< double > &biases, double &correlation_coefficient) | AbsoluteQuantitation |
calculateRatio(const Feature &component_1, const Feature &component_2, const String &feature_name) | AbsoluteQuantitation |
check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
extractComponents_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const std::vector< size_t > &component_concentrations_indices) | AbsoluteQuantitation | protected
fitCalibration(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation |
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getQuantMethods() | AbsoluteQuantitation |
getQuantMethodsAsMap() | AbsoluteQuantitation |
getSubsections() const | DefaultParamHandler |
jackknifeOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation | protected
max_bias_ | AbsoluteQuantitation | private
max_iters_ | AbsoluteQuantitation | private
min_correlation_coefficient_ | AbsoluteQuantitation | private
min_points_ | AbsoluteQuantitation | private
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
optimization_method_ | AbsoluteQuantitation | private
optimizeCalibrationCurveIterative(std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, Param &optimized_params) | AbsoluteQuantitation |
optimizeCalibrationCurves(std::map< String, std::vector< AbsoluteQuantitationStandards::featureConcentration >> &components_concentrations) | AbsoluteQuantitation |
optimizeSingleCalibrationCurve(const String &component_name, std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations) | AbsoluteQuantitation |
outlier_detection_method_ | AbsoluteQuantitation | private
param_ | DefaultParamHandler | protected
quant_methods_ | AbsoluteQuantitation | private
quantifyComponents(FeatureMap &unknowns) | AbsoluteQuantitation |
residualOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params) | AbsoluteQuantitation | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setQuantMethods(std::vector< AbsoluteQuantitationMethod > &quant_methods) | AbsoluteQuantitation |
subsections_ | DefaultParamHandler | protected
updateMembers_() | AbsoluteQuantitation | private virtual
use_chauvenet_ | AbsoluteQuantitation | private
warn_empty_defaults_ | DefaultParamHandler | protected
~AbsoluteQuantitation() | AbsoluteQuantitation |
~DefaultParamHandler() | DefaultParamHandler | virtual