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ExtendedIsotopeFitter1D.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h>
38
39 namespace OpenMS
40 {
46 class OPENMS_DLLAPI ExtendedIsotopeFitter1D :
47 public MaxLikeliFitter1D
48 {
49 public:
50
52 ExtendedIsotopeFitter1D();
53
55 ExtendedIsotopeFitter1D(const ExtendedIsotopeFitter1D & source);
56
58 ~ExtendedIsotopeFitter1D() override;
59
61 virtual ExtendedIsotopeFitter1D & operator=(const ExtendedIsotopeFitter1D & source);
62
64 static Fitter1D * create()
65 {
66 return new ExtendedIsotopeFitter1D();
67 }
68
70 static const String getProductName()
71 {
72 return "ExtendedIsotopeFitter1D";
73 }
74
76 QualityType fit1d(const RawDataArrayType & range, InterpolationModel * & model) override;
77
78 protected:
79
81 CoordinateType charge_;
83 CoordinateType isotope_stdev_;
85 CoordinateType monoisotopic_mz_;
87 Int max_isotope_;
88
89 void updateMembers_() override;
90 };
91 }
92
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::ExtendedIsotopeFitter1D::create
static Fitter1D * create()
create new ExtendedIsotopeFitter1D object (function needed by Factory)
Definition: ExtendedIsotopeFitter1D.h:64
OpenMS::Fitter1D
Abstract base class for all 1D-dimensional model fitter.
Definition: Fitter1D.h:58
OpenMS::InterpolationModel
Abstract class for 1D-models that are approximated using linear interpolation.
Definition: InterpolationModel.h:54
MaxLikeliFitter1D.h
OpenMS::ExtendedIsotopeFitter1D
Extended isotope distribution fitter (1-dim.) approximated using linear interpolation.
Definition: ExtendedIsotopeFitter1D.h:46
OpenMS::ExtendedIsotopeFitter1D::charge_
CoordinateType charge_
isotope charge
Definition: ExtendedIsotopeFitter1D.h:81
OpenMS::ExtendedIsotopeFitter1D::monoisotopic_mz_
CoordinateType monoisotopic_mz_
monoisotopic mass
Definition: ExtendedIsotopeFitter1D.h:85
OpenMS::MaxLikeliFitter1D
Abstract base class for all 1D-model fitters using maximum likelihood optimization.
Definition: MaxLikeliFitter1D.h:47
OpenMS::ExtendedIsotopeFitter1D::isotope_stdev_
CoordinateType isotope_stdev_
standard derivation in isotope
Definition: ExtendedIsotopeFitter1D.h:83
OpenMS::Fitter1D::CoordinateType
Feature::CoordinateType CoordinateType
Single coordinate.
Definition: Fitter1D.h:69
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
int
OpenMS::ExtendedIsotopeFitter1D::getProductName
static const String getProductName()
name of the model (needed by Factory)
Definition: ExtendedIsotopeFitter1D.h:70
OpenMS::ExtendedIsotopeFitter1D::max_isotope_
Int max_isotope_
maximum isotopic rank to be considered
Definition: ExtendedIsotopeFitter1D.h:87