| OpenMS 2.5.0

SimpleSearchEngineAlgorithm Member List

This is the complete list of members for SimpleSearchEngineAlgorithm, including all inherited members.

check_defaults_ | DefaultParamHandler | protected
CMD enum value | ProgressLogger |
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
enzyme_ | SimpleSearchEngineAlgorithm | protected
error_name_ | DefaultParamHandler | protected
ExitCodes enum name | SimpleSearchEngineAlgorithm |
fragment_mass_tolerance_ | SimpleSearchEngineAlgorithm | protected
fragment_mass_tolerance_unit_ | SimpleSearchEngineAlgorithm | protected
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
modifications_fixed_ | SimpleSearchEngineAlgorithm | protected
modifications_max_variable_mods_per_peptide_ | SimpleSearchEngineAlgorithm | protected
modifications_variable_ | SimpleSearchEngineAlgorithm | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
peptide_max_size_ | SimpleSearchEngineAlgorithm | protected
peptide_min_size_ | SimpleSearchEngineAlgorithm | protected
peptide_missed_cleavages_ | SimpleSearchEngineAlgorithm | protected
peptide_motif_ | SimpleSearchEngineAlgorithm | protected
postProcessHits_(const PeakMap &exp, std::vector< std::vector< SimpleSearchEngineAlgorithm::AnnotatedHit_ > > &annotated_hits, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids, Size top_hits, const ModifiedPeptideGenerator::MapToResidueType &fixed_modifications, const ModifiedPeptideGenerator::MapToResidueType &variable_modifications, Size max_variable_mods_per_peptide, const StringList &modifications_fixed, const StringList &modifications_variable, Int peptide_missed_cleavages, double precursor_mass_tolerance, double fragment_mass_tolerance, const String &precursor_mass_tolerance_unit_ppm, const String &fragment_mass_tolerance_unit_ppm, const Int precursor_min_charge, const Int precursor_max_charge, const String &enzyme, const String &database_name) | SimpleSearchEngineAlgorithm | protected static
precursor_isotopes_ | SimpleSearchEngineAlgorithm | protected
precursor_mass_tolerance_ | SimpleSearchEngineAlgorithm | protected
precursor_mass_tolerance_unit_ | SimpleSearchEngineAlgorithm | protected
precursor_max_charge_ | SimpleSearchEngineAlgorithm | protected
precursor_min_charge_ | SimpleSearchEngineAlgorithm | protected
preprocessSpectra_(PeakMap &exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm) | SimpleSearchEngineAlgorithm | protected static
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
report_top_hits_ | SimpleSearchEngineAlgorithm | protected
search(const String &in_mzML, const String &in_db, std::vector< ProteinIdentification > &prot_ids, std::vector< PeptideIdentification > &pep_ids) const | SimpleSearchEngineAlgorithm |
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
SimpleSearchEngineAlgorithm() | SimpleSearchEngineAlgorithm |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutable protected
updateMembers_() override | SimpleSearchEngineAlgorithm | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProgressLogger() | ProgressLogger |