| OpenMS 2.5.0

MRMTransitionGroupPicker Member List

This is the complete list of members for MRMTransitionGroupPicker, including all inherited members.

background_subtraction_ | MRMTransitionGroupPicker | protected
boundary_selection_method_ | MRMTransitionGroupPicker | protected
check_defaults_ | DefaultParamHandler | protected
compute_peak_quality_ | MRMTransitionGroupPicker | protected
compute_peak_shape_metrics_ | MRMTransitionGroupPicker | protected
compute_total_mi_ | MRMTransitionGroupPicker | protected
computeQuality_(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, const int chr_idx, const double best_left, const double best_right, String &outlier) | MRMTransitionGroupPicker | inline protected
createMRMFeature(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, std::vector< SpectrumT > &picked_chroms, const std::vector< SpectrumT > &smoothed_chroms, const int chr_idx, const int peak_idx) | MRMTransitionGroupPicker | inline
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
findLargestPeak(const std::vector< MSChromatogram > &picked_chroms, int &chr_idx, int &peak_idx) | MRMTransitionGroupPicker |
findWidestPeakIndices(const std::vector< MSChromatogram > &picked_chroms, Int &chrom_idx, Int &point_idx) const | MRMTransitionGroupPicker |
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
min_peak_width_ | MRMTransitionGroupPicker | protected
min_qual_ | MRMTransitionGroupPicker | protected
MRMTransitionGroupPicker() | MRMTransitionGroupPicker |
operator=(const MRMTransitionGroupPicker &rhs) | MRMTransitionGroupPicker | protected
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
peak_integration_ | MRMTransitionGroupPicker | protected
pi_ | MRMTransitionGroupPicker | protected
pickApex(std::vector< SpectrumT > &picked_chroms, const double best_left, const double best_right, const double peak_apex, double &min_left, double &max_right, std::vector< double > &left_edges, std::vector< double > &right_edges) | MRMTransitionGroupPicker | inline
picker_ | MRMTransitionGroupPicker | protected
pickFragmentChromatograms(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, MRMFeature &mrmFeature, const std::vector< SpectrumT > &smoothed_chroms, const double best_left, const double best_right, const bool use_consensus_, double &total_intensity, double &total_xic, double &total_mi, double &total_peak_apices, const SpectrumT &master_peak_container, const std::vector< double > &left_edges, const std::vector< double > &right_edges, const int chr_idx, const int peak_idx) | MRMTransitionGroupPicker | inline
pickPrecursorChromatograms(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const std::vector< SpectrumT > &picked_chroms, MRMFeature &mrmFeature, const std::vector< SpectrumT > &smoothed_chroms, const double best_left, const double best_right, const bool use_consensus_, double &total_intensity, const SpectrumT &master_peak_container, const std::vector< double > &left_edges, const std::vector< double > &right_edges, const int chr_idx, const int peak_idx) | MRMTransitionGroupPicker | inline
pickTransitionGroup(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group) | MRMTransitionGroupPicker | inline
prepareMasterContainer_(const SpectrumT &ref_chromatogram, SpectrumT &master_peak_container, double left_boundary, double right_boundary) | MRMTransitionGroupPicker | inline protected
recalculate_peaks_ | MRMTransitionGroupPicker | protected
recalculate_peaks_max_z_ | MRMTransitionGroupPicker | protected
recalculatePeakBorders_(const std::vector< SpectrumT > &picked_chroms, double &best_left, double &best_right, double max_z) | MRMTransitionGroupPicker | inline protected
remove_overlapping_features(std::vector< SpectrumT > &picked_chroms, double best_left, double best_right) | MRMTransitionGroupPicker | inline
resample_boundary_ | MRMTransitionGroupPicker | protected
resampleChromatogram_(const SpectrumT &chromatogram, const SpectrumT &master_peak_container, double left_boundary, double right_boundary) | MRMTransitionGroupPicker | inline protected
selectChromHelper_(const MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, const String &native_id) | MRMTransitionGroupPicker | inline protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
stop_after_feature_ | MRMTransitionGroupPicker | protected
stop_after_intensity_ratio_ | MRMTransitionGroupPicker | protected
subsections_ | DefaultParamHandler | protected
updateMembers_() override | MRMTransitionGroupPicker | protected virtual
use_consensus_ | MRMTransitionGroupPicker | protected
use_precursors_ | MRMTransitionGroupPicker | protected
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~MRMTransitionGroupPicker() override | MRMTransitionGroupPicker |