| OpenMS 2.5.0

RawMSSignalSimulation Member List

This is the complete list of members for RawMSSignalSimulation, including all inherited members.

add1DSignal_(Feature &feature, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct) | RawMSSignalSimulation | protected
add2DSignal_(Feature &feature, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct) | RawMSSignalSimulation | protected
addBaseLine_(SimTypes::MSSimExperiment &experiment, SimTypes::SimCoordinateType minimal_mz_measurement_limit) | RawMSSignalSimulation | protected
addDetectorNoise_(SimTypes::MSSimExperiment &experiment) | RawMSSignalSimulation | protected
addShotNoise_(SimTypes::MSSimExperiment &experiment, SimTypes::SimCoordinateType minimal_mz_measurement_limit, SimTypes::SimCoordinateType maximal_mz_measurement_limit) | RawMSSignalSimulation | protected
addWhiteNoise_(SimTypes::MSSimExperiment &experiment) | RawMSSignalSimulation | protected
check_defaults_ | DefaultParamHandler | protected
chooseElutionProfile_(EGHModel *const elutionmodel, Feature &feature, const double scale, const double rt_sampling_rate, const SimTypes::MSSimExperiment &experiment) | RawMSSignalSimulation | protected
CMD enum value | ProgressLogger |
compressSignals_(SimTypes::MSSimExperiment &experiment) | RawMSSignalSimulation | protected
contaminants_ | RawMSSignalSimulation | protected
contaminants_loaded_ | RawMSSignalSimulation | protected
createContaminants_(SimTypes::FeatureMapSim &contaminants, SimTypes::MSSimExperiment &exp, SimTypes::MSSimExperiment &exp_ct) | RawMSSignalSimulation | protected
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
generateRawSignals(SimTypes::FeatureMapSim &features, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct, SimTypes::FeatureMapSim &contaminants) | RawMSSignalSimulation |
getDefaults() const | DefaultParamHandler |
getFeatureScaledIntensity_(const SimTypes::SimIntensityType feature_intensity, const SimTypes::SimIntensityType natural_scaling_factor) | RawMSSignalSimulation | protected
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getPeakWidth_(const double mz, const bool is_gaussian) const | RawMSSignalSimulation | protected
getResolution_(const double query_mz, const double resolution, const RESOLUTIONMODEL model) const | RawMSSignalSimulation | protected
getSamplingGrid_(std::vector< SimTypes::SimCoordinateType > &grid, const SimTypes::SimCoordinateType mz_min, const SimTypes::SimCoordinateType mz_max, const Int step_Da) | RawMSSignalSimulation | protected
getSubsections() const | DefaultParamHandler |
grid_ | RawMSSignalSimulation | protected
GUI enum value | ProgressLogger |
IM_ALL enum value | RawMSSignalSimulation | protected
IM_ESI enum value | RawMSSignalSimulation | protected
IM_MALDI enum value | RawMSSignalSimulation | protected
intensity_scale_ | RawMSSignalSimulation | protected
intensity_scale_stddev_ | RawMSSignalSimulation | protected
IONIZATIONMETHOD enum name | RawMSSignalSimulation | protected
last_invoke_ | ProgressLogger | mutable protected
loadContaminants() | RawMSSignalSimulation |
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
mz_error_mean_ | RawMSSignalSimulation | protected
mz_error_stddev_ | RawMSSignalSimulation | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const RawMSSignalSimulation &source) | RawMSSignalSimulation |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
PROFILESHAPE enum name | RawMSSignalSimulation | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
RawMSSignalSimulation() | RawMSSignalSimulation |
RawMSSignalSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr rng) | RawMSSignalSimulation | explicit
RawMSSignalSimulation(const RawMSSignalSimulation &source) | RawMSSignalSimulation |
recursion_depth_ | ProgressLogger | protected static
res_base_ | RawMSSignalSimulation | protected
RES_CONSTANT enum value | RawMSSignalSimulation | protected
RES_LINEAR enum value | RawMSSignalSimulation | protected
res_model_ | RawMSSignalSimulation | protected
RES_SQRT enum value | RawMSSignalSimulation | protected
RESOLUTIONMODEL enum name | RawMSSignalSimulation | protected
rnd_gen_ | RawMSSignalSimulation | protected
RT_GAUSSIAN enum value | RawMSSignalSimulation | protected
RT_RECTANGULAR enum value | RawMSSignalSimulation | protected
samplePeptideModel1D_(const IsotopeModel &iso, const SimTypes::SimCoordinateType mz_start, const SimTypes::SimCoordinateType mz_end, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct, Feature &activeFeature) | RawMSSignalSimulation | protected
samplePeptideModel2D_(const ProductModel< 2 > &pm, const SimTypes::SimCoordinateType mz_start, const SimTypes::SimCoordinateType mz_end, SimTypes::SimCoordinateType rt_start, SimTypes::SimCoordinateType rt_end, SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &experiment_ct, Feature &activeFeature) | RawMSSignalSimulation | protected
sampling_points_per_FWHM_ | RawMSSignalSimulation | protected
setDefaultParams_() | RawMSSignalSimulation | protected
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
THREADED_RANDOM_NUMBER_POOL_SIZE_ | RawMSSignalSimulation | protected static
threaded_random_numbers_ | RawMSSignalSimulation | protected
threaded_random_numbers_index_ | RawMSSignalSimulation | protected
type_ | ProgressLogger | mutable protected
updateMembers_() override | RawMSSignalSimulation | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProgressLogger() | ProgressLogger |
~RawMSSignalSimulation() override | RawMSSignalSimulation |