| OpenMS 2.5.0

InternalCalibration Member List

This is the complete list of members for InternalCalibration, including all inherited members.

applyTransformation(std::vector< Precursor > &pcs, const MZTrafoModel &trafo) | InternalCalibration | static
applyTransformation(PeakMap::SpectrumType &spec, const IntList &target_mslvl, const MZTrafoModel &trafo) | InternalCalibration | static
applyTransformation(PeakMap &exp, const IntList &target_mslvl, const MZTrafoModel &trafo) | InternalCalibration | static
applyTransformation_(PeakMap::SpectrumType &spec, const MZTrafoModel &trafo) | InternalCalibration | protected static
cal_data_ | InternalCalibration | private
calibrate(PeakMap &exp, const IntList &target_mslvl, MZTrafoModel::MODELTYPE model_type, double rt_chunk, bool use_RANSAC, double post_ppm_median, double post_ppm_MAD, const String &file_models="", const String &file_models_plot="", const String &file_residuals="", const String &file_residuals_plot="", const String &rscript_executable="Rscript") | InternalCalibration |
CMD enum value | ProgressLogger |
current_logger_ | ProgressLogger | mutable protected
endProgress() const | ProgressLogger |
fillCalibrants(const PeakMap exp, const std::vector< InternalCalibration::LockMass > &ref_masses, double tol_ppm, bool lock_require_mono, bool lock_require_iso, CalibrationData &failed_lock_masses, bool verbose=true) | InternalCalibration |
fillCalibrants(const FeatureMap &fm, double tol_ppm) | InternalCalibration |
fillCalibrants(const std::vector< PeptideIdentification > &pep_ids, double tol_ppm) | InternalCalibration |
fillIDs_(const std::vector< PeptideIdentification > &pep_ids, double tol_ppm) | InternalCalibration | protected
getCalibrationPoints() const | InternalCalibration |
getLogType() const | ProgressLogger |
GUI enum value | ProgressLogger |
InternalCalibration() | InternalCalibration |
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const ProgressLogger &other) | ProgressLogger |
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
setLogType(LogType type) const | ProgressLogger |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
type_ | ProgressLogger | mutable protected
~InternalCalibration() | InternalCalibration | inline
~ProgressLogger() | ProgressLogger |