| OpenMS 2.5.0

IdentificationDataConverter Member List

This is the complete list of members for IdentificationDataConverter, including all inherited members.

addMzTabMoleculeParentContext_(const std::set< IdentificationData::MoleculeParentMatch > &matches, MzTabOligonucleotideSectionRow &row) | IdentificationDataConverter | protected static
addMzTabMoleculeParentContext_(const std::set< IdentificationData::MoleculeParentMatch > &matches, MzTabPeptideSectionRow &row) | IdentificationDataConverter | protected static
addMzTabSEScores_(const std::map< IdentificationData::ScoreTypeRef, Size > &scores, std::map< Size, MzTabParameter > &output) | IdentificationDataConverter | protected static
exportDBSearchParameters_(IdentificationData::SearchParamRef ref) | IdentificationDataConverter | protected static
exportIDs(const IdentificationData &id_data, std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, bool export_oligonucleotides=false) | IdentificationDataConverter | static
exportMSRunInformation_(IdentificationData::ProcessingStepRef step_ref, ProteinIdentification &protein) | IdentificationDataConverter | protected static
exportMzTab(const IdentificationData &id_data) | IdentificationDataConverter | static
exportParentMoleculeToMzTab_(const IdentificationData::ParentMolecule &parent, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | inline protected static
exportPeptideOrOligoToMzTab_(const IdentSeq &identified, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | inline protected static
exportQueryMatchToMzTab_(const String &sequence, const IdentificationData::MoleculeQueryMatch &match, double calc_mass, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map, std::map< IdentificationData::InputFileRef, Size > &file_map) | IdentificationDataConverter | inline protected static
exportStepsAndScoresToMzTab_(const IdentificationData::AppliedProcessingSteps &steps_and_scores, MzTabParameterList &steps_out, std::map< Size, MzTabDouble > &scores_out, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | protected static
importDBSearchParameters_(const ProteinIdentification::SearchParameters &pisp, IdentificationData &id_data) | IdentificationDataConverter | protected static
importIDs(IdentificationData &id_data, const std::vector< ProteinIdentification > &proteins, const std::vector< PeptideIdentification > &peptides) | IdentificationDataConverter | static
importSequences(IdentificationData &id_data, const std::vector< FASTAFile::FASTAEntry > &fasta, IdentificationData::MoleculeType type=IdentificationData::MoleculeType::PROTEIN, const String &decoy_pattern="") | IdentificationDataConverter | static