| OpenMS 2.5.0

IDMapper Member List

This is the complete list of members for IDMapper, including all inherited members.

annotate(PeakMap &map, const std::vector< PeptideIdentification > &peptide_ids, const std::vector< ProteinIdentification > &protein_ids, const bool clear_ids=false, const bool map_ms1=false) | IDMapper |
annotate(PeakMap &map, FeatureMap fmap, const bool clear_ids=false, const bool map_ms1=false) | IDMapper |
annotate(FeatureMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool use_centroid_rt=false, bool use_centroid_mz=false, const PeakMap &spectra=PeakMap()) | IDMapper |
annotate(ConsensusMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool measure_from_subelements=false, bool annotate_ids_with_subelements=false, const PeakMap &spectra=PeakMap()) | IDMapper |
check_defaults_ | DefaultParamHandler | protected
checkHits_(const std::vector< PeptideIdentification > &ids) const | IDMapper | protected
checkMassType_(const std::vector< DataProcessing > &processing) const | IDMapper | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getAbsoluteMZTolerance_(const double mz) const | IDMapper | protected
getDefaults() const | DefaultParamHandler |
getIDDetails_(const PeptideIdentification &id, double &rt_pep, DoubleList &mz_values, IntList &charges, bool use_avg_mass=false) const | IDMapper | protected
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
IDMapper() | IDMapper |
IDMapper(const IDMapper &cp) | IDMapper |
ignore_charge_ | IDMapper | protected
increaseBoundingBox_(DBoundingBox< 2 > &box) | IDMapper | protected
isMatch_(const double rt_distance, const double mz_theoretical, const double mz_observed) const | IDMapper | protected
mapPrecursorsToIdentifications(const PeakMap &spectra, const std::vector< PeptideIdentification > &ids, double mz_tol=0.001, double rt_tol=0.001) | IDMapper | inline static
Measure enum name | IDMapper |
measure_ | IDMapper | protected
MEASURE_DA enum value | IDMapper |
MEASURE_PPM enum value | IDMapper |
mz_tolerance_ | IDMapper | protected
operator=(const IDMapper &rhs) | IDMapper |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
rt_tolerance_ | IDMapper | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
subsections_ | DefaultParamHandler | protected
updateMembers_() override | IDMapper | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual