| OpenMS 2.5.0

SvmTheoreticalSpectrumGeneratorTrainer Member List

This is the complete list of members for SvmTheoreticalSpectrumGeneratorTrainer, including all inherited members.

check_defaults_ | DefaultParamHandler | protected
countIntensities_(const PeakSpectrum &spectrum, const AASequence &annotation, IonType type, std::map< std::pair< IonType, Size >, std::vector< double > > &observed_intensities, double tolerance, Size number_of_regions) | SvmTheoreticalSpectrumGeneratorTrainer | private
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
DescriptorSet typedef | SvmTheoreticalSpectrumGeneratorTrainer | private
error_name_ | DefaultParamHandler | protected
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
IonType typedef | SvmTheoreticalSpectrumGeneratorTrainer | private
normalizeIntensity(PeakSpectrum &S) const | SvmTheoreticalSpectrumGeneratorTrainer |
ObservedIntensMap typedef | SvmTheoreticalSpectrumGeneratorTrainer | private
operator=(const SvmTheoreticalSpectrumGeneratorTrainer &tsg) | SvmTheoreticalSpectrumGeneratorTrainer |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
subsections_ | DefaultParamHandler | protected
SvmTheoreticalSpectrumGeneratorTrainer() | SvmTheoreticalSpectrumGeneratorTrainer |
SvmTheoreticalSpectrumGeneratorTrainer(const SvmTheoreticalSpectrumGeneratorTrainer &source) | SvmTheoreticalSpectrumGeneratorTrainer |
trainModel(const PeakMap &spectra, const std::vector< AASequence > &annotations, String filename, Int precursor_charge) | SvmTheoreticalSpectrumGeneratorTrainer |
trainSecondaryTypes_(TextFile &info_outfile, Size number_of_regions, Size number_of_intensity_levels, ObservedIntensMap &observed_intensities, const std::vector< IonType > &ion_types, const std::vector< bool > &is_primary) | SvmTheoreticalSpectrumGeneratorTrainer | private
updateMembers_() | DefaultParamHandler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
writeTrainingFile_(std::vector< DescriptorSet > &training_input, std::vector< double > &training_output, String filename) | SvmTheoreticalSpectrumGeneratorTrainer | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~SvmTheoreticalSpectrumGeneratorTrainer() override | SvmTheoreticalSpectrumGeneratorTrainer |