| OpenMS 2.5.0

Classes | Namespaces
PeptideIndexing.h File Reference
`#include <OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h>`
`#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>`
`#include <OpenMS/CHEMISTRY/ProteaseDB.h>`
`#include <OpenMS/CONCEPT/LogStream.h>`
`#include <OpenMS/CONCEPT/ProgressLogger.h>`
`#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>`
`#include <OpenMS/DATASTRUCTURES/FASTAContainer.h>`
`#include <OpenMS/DATASTRUCTURES/ListUtils.h>`
`#include <OpenMS/DATASTRUCTURES/StringUtils.h>`
`#include <OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h>`
`#include <OpenMS/FORMAT/FASTAFile.h>`
`#include <OpenMS/KERNEL/StandardTypes.h>`
`#include <OpenMS/METADATA/PeptideEvidence.h>`
`#include <OpenMS/METADATA/PeptideIdentification.h>`
`#include <OpenMS/METADATA/ProteinIdentification.h>`
`#include <OpenMS/SYSTEM/StopWatch.h>`
`#include <OpenMS/SYSTEM/SysInfo.h>`
`#include <atomic>`
`#include <algorithm>`
`#include <fstream>`

Go to the source code of this file.

## Classes

class | PeptideIndexing
| Refreshes the protein references for all peptide hits in a vector of PeptideIdentifications and adds target/decoy information. More...
struct | PeptideIndexing::PeptideProteinMatchInformation
struct | PeptideIndexing::FoundProteinFunctor

## Namespaces

| OpenMS
| Main OpenMS namespace.