| OpenMS 2.5.0

MassDecomposition.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Andreas Bertsch $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/config.h>
38 #include <OpenMS/CONCEPT/Types.h>
39
40 #include <map>
41
42 namespace OpenMS
43 {
44 class String;
45
53 class OPENMS_DLLAPI MassDecomposition
54 {
55 public:
56
61 MassDecomposition();
63
65 MassDecomposition(const MassDecomposition& deco);
66
68 explicit MassDecomposition(const String& deco);
70
75 MassDecomposition& operator=(const MassDecomposition& rhs);
77
79 MassDecomposition& operator+=(const MassDecomposition& d);
80
82 String toString() const;
83
85 String toExpandedString() const;
86
88 MassDecomposition operator+(const MassDecomposition& rhs) const;
89
91 Size getNumberOfMaxAA() const;
93
98 bool operator<(const MassDecomposition& rhs) const;
100
102 bool operator==(const String& deco) const;
103
105 bool containsTag(const String& tag) const;
106
108 bool compatible(const MassDecomposition& deco) const;
110
111 protected:
112 std::map<char, Size> decomp_;
113 Size number_of_max_aa_;
114 };
115 } // namespace OpenMS
116
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::operator<
bool operator<(const MultiplexDeltaMasses &dm1, const MultiplexDeltaMasses &dm2)
OpenMS::MassDecomposition
Class represents a decomposition of a mass into amino acids.
Definition: MassDecomposition.h:53
OpenMS::StringConversions::toString
String toString(const T &i)
fallback template for general purpose using Boost::Karma; more specializations below ...
Definition: StringUtils.h:85
Types.h
OpenMS::MassDecomposition::number_of_max_aa_
Size number_of_max_aa_
Definition: MassDecomposition.h:113
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::MassDecomposition::decomp_
std::map< char, Size > decomp_
Definition: MassDecomposition.h:112
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
KDTree::operator==
bool operator==(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition: KDTree.h:806