| OpenMS 2.5.0

SvmTheoreticalSpectrumGenerator Member List

This is the complete list of members for SvmTheoreticalSpectrumGenerator, including all inherited members.

aa_to_index_ | SvmTheoreticalSpectrumGenerator | protected static
basicity_ | SvmTheoreticalSpectrumGenerator | protected static
check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
generateDescriptorSet_(AASequence peptide, Size position, IonType type, Size precursor_charge, DescriptorSet &desc_set) | SvmTheoreticalSpectrumGenerator | protected
getDefaults() const | DefaultParamHandler |
getIonTypes() | SvmTheoreticalSpectrumGenerator | inline
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
helicity_ | SvmTheoreticalSpectrumGenerator | protected static
hide_type_ | SvmTheoreticalSpectrumGenerator | protected
hydrophobicity_ | SvmTheoreticalSpectrumGenerator | protected static
initializedMaps_ | SvmTheoreticalSpectrumGenerator | protected static
initializeMaps_() | SvmTheoreticalSpectrumGenerator | protected static
IntensityMap typedef | SvmTheoreticalSpectrumGenerator | protected
load() | SvmTheoreticalSpectrumGenerator |
mp_ | SvmTheoreticalSpectrumGenerator | protected
operator=(const SvmTheoreticalSpectrumGenerator &tsg) | SvmTheoreticalSpectrumGenerator |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
precursor_charge_ | SvmTheoreticalSpectrumGenerator | protected
ResidueTypeToString_(Residue::ResidueType type) | SvmTheoreticalSpectrumGenerator | protected
scaleDescriptorSet_(DescriptorSet &desc, double lower, double upper) | SvmTheoreticalSpectrumGenerator | protected
scaleSingleFeature_(double &value, double feature_min, double feature_max, double lower=-1.0, double upper=1.0) | SvmTheoreticalSpectrumGenerator | inline protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
simulate(PeakSpectrum &spectrum, const AASequence &peptide, boost::random::mt19937_64 &rng, Size precursor_charge) | SvmTheoreticalSpectrumGenerator |
subsections_ | DefaultParamHandler | protected
SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator |
SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator &source) | SvmTheoreticalSpectrumGenerator |
SvmTheoreticalSpectrumGeneratorTrainer class | SvmTheoreticalSpectrumGenerator | friend
updateMembers_() override | SvmTheoreticalSpectrumGenerator | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~SvmTheoreticalSpectrumGenerator() override | SvmTheoreticalSpectrumGenerator |