| OpenMS 2.5.0

Classes | Public Member Functions | Public Attributes | List of all members
MzTabProteinSectionRow Struct Reference

PRT - Protein section (Table based) More...

`#include <OpenMS/FORMAT/MzTab.h>`

## Classes

struct | RowCompare
| Comparison operator for sorting rows. More...

## Public Member Functions

| MzTabProteinSectionRow ()

## Public Attributes

MzTabString | accession
| The protein’s accession. More...
MzTabString | description
| Human readable description (i.e. the name) More...
MzTabInteger | taxid
| NEWT taxonomy for the species. More...
MzTabString | species
| Human readable name of the species. More...
MzTabString | database
| Name of the protein database. More...
MzTabString | database_version
| String Version of the protein database. More...
MzTabParameterList | search_engine
| Search engine(s) identifying the protein. More...
std::map< Size, MzTabDouble > | best_search_engine_score
| best_search_engine_score[1-n] More...
std::map< Size, std::map< Size, MzTabDouble > > | search_engine_score_ms_run
| search_engine_score[index1]_ms_run[index2] More...
MzTabInteger | reliability
std::map< Size, MzTabInteger > | num_psms_ms_run
std::map< Size, MzTabInteger > | num_peptides_distinct_ms_run
std::map< Size, MzTabInteger > | num_peptides_unique_ms_run
MzTabStringList | ambiguity_members
| Alternative protein identifications. More...
MzTabModificationList | modifications
| Modifications identified in the protein. More...
MzTabString | uri
| Location of the protein’s source entry. More...
MzTabStringList | go_terms
| List of GO terms for the protein. More...
MzTabDouble | coverage
| (0-1) Amount of protein sequence identified. More...
std::map< Size, MzTabDouble > | protein_abundance_assay
std::map< Size, MzTabDouble > | protein_abundance_study_variable
std::map< Size, MzTabDouble > | protein_abundance_stdev_study_variable
std::map< Size, MzTabDouble > | protein_abundance_std_error_study_variable
std::vector< MzTabOptionalColumnEntry > | opt_
| Optional Columns must start with “opt_” More...

## Detailed Description

PRT - Protein section (Table based)

## Constructor & Destructor Documentation

## ◆ MzTabProteinSectionRow()

MzTabProteinSectionRow | ( |  | ) |

## Member Data Documentation

## ◆ accession

MzTabString accession

The protein’s accession.

Referenced by MzTabProteinSectionRow::RowCompare::operator()().

## ◆ ambiguity_members

MzTabStringList ambiguity_members

Alternative protein identifications.

## ◆ best_search_engine_score

std::map<Size, MzTabDouble> best_search_engine_score

best_search_engine_score[1-n]

## ◆ coverage

MzTabDouble coverage

(0-1) Amount of protein sequence identified.

## ◆ database

MzTabString database

Name of the protein database.

## ◆ database_version

MzTabString database_version

String Version of the protein database.

## ◆ description

MzTabString description

Human readable description (i.e. the name)

## ◆ go_terms

MzTabStringList go_terms

List of GO terms for the protein.

## ◆ modifications

MzTabModificationList modifications

Modifications identified in the protein.

## ◆ num_peptides_distinct_ms_run

std::map<Size, MzTabInteger> num_peptides_distinct_ms_run

## ◆ num_peptides_unique_ms_run

std::map<Size, MzTabInteger> num_peptides_unique_ms_run

## ◆ num_psms_ms_run

std::map<Size, MzTabInteger> num_psms_ms_run

## ◆ opt_

std::vector<MzTabOptionalColumnEntry> opt_

Optional Columns must start with “opt_”

## ◆ protein_abundance_assay

std::map<Size, MzTabDouble> protein_abundance_assay

## ◆ protein_abundance_std_error_study_variable

std::map<Size, MzTabDouble> protein_abundance_std_error_study_variable

## ◆ protein_abundance_stdev_study_variable

std::map<Size, MzTabDouble> protein_abundance_stdev_study_variable

## ◆ protein_abundance_study_variable

std::map<Size, MzTabDouble> protein_abundance_study_variable

## ◆ reliability

MzTabInteger reliability

## ◆ search_engine

MzTabParameterList search_engine

Search engine(s) identifying the protein.

## ◆ search_engine_score_ms_run

std::map<Size, std::map<Size, MzTabDouble> > search_engine_score_ms_run

search_engine_score[index1]_ms_run[index2]

## ◆ species

MzTabString species

Human readable name of the species.

## ◆ taxid

MzTabInteger taxid

NEWT taxonomy for the species.

## ◆ uri

MzTabString uri

Location of the protein’s source entry.