| OpenMS 2.5.0

ProteinInference.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Chris Bielow $
32 // $Authors: $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/KERNEL/Peak2D.h>
38
39 #include <vector>
40
41 namespace OpenMS
42 {
43
44 class PeptideHit;
45 class ConsensusMap;
46
54 class OPENMS_DLLAPI ProteinInference
55 {
56
57 public:
58
59 typedef Peak2D::IntensityType IntensityType;
60
62 ProteinInference();
63
65 ProteinInference(const ProteinInference& cp);
66
68 ProteinInference& operator=(const ProteinInference& rhs);
69
83 void infer(ConsensusMap& consensus_map, const UInt reference_map);
84
85
86 protected:
87
88 void infer_(ConsensusMap& consensus_map,
89 const size_t protein_idenfication_index,
90 const UInt reference_map);
91
92 bool sortByUnique_(std::vector<PeptideHit>& peptide_hits_local, const bool is_higher_score_better);
93
94 }; // !class
95
96 } // !namespace
97
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
Peak2D.h
OpenMS::ProteinInference
[experimental class] given a peptide quantitation, infer corresponding protein quantities ...
Definition: ProteinInference.h:54
OpenMS::UInt
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
float
OpenMS::ConsensusMap
A container for consensus elements.
Definition: ConsensusMap.h:79
OpenMS::ProteinInference::IntensityType
Peak2D::IntensityType IntensityType
Definition: ProteinInference.h:59