| OpenMS 2.5.0

### - d -

- DataFilter() : DataFilters::DataFilter
- DataFilterDialog() : DataFilterDialog
- DataFilters() : DataFilters
- DataMatrix() : DataMatrix
- DataPoint() : TransformationModel::DataPoint
- DataProcessing() : DataProcessing
- DataProcessingSoftware() : DataProcessingSoftware
- DataProcessingStep() : DataProcessingStep
- DataProcessingVisualizer() : DataProcessingVisualizer
- DataQuery() : DataQuery
- dataToWidget() : Spectrum1DCanvas
- dataToWidget_() : Spectrum2DCanvas , SpectrumCanvas
- dataToZoomArray_() : Spectrum3DOpenGLCanvas
- DataValue() : DataValue
- Date() : Date
- DateTime() : DateTime
- DBoundingBox() : DBoundingBox< D >
- dbPreprocessing() : PrecursorIonSelectionPreprocessing
- DBSearchParam() : DBSearchParam
- deactivate1DSpectrum() : TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
- deactivateBehavior() : TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
- deactivatePrecalculationMode() : MultiGradient
- debug() : BSpline2d
- debugFileCreator_() : MapAlignmentAlgorithmSpectrumAlignment
- debugOut_() : TOPPASVertex
- debugscoreDistributionCalculation_() : MapAlignmentAlgorithmSpectrumAlignment
- decode() : Base64
- decodeBase64Arrays() : MzMLHandlerHelper
- decodeBinaryDataChrom_() : MzMLSpectrumDecoder
- decodeBinaryDataMSChrom_() : MzMLSpectrumDecoder
- decodeBinaryDataMSSpectrum_() : MzMLSpectrumDecoder
- decodeBinaryDataSpectrum_() : MzMLSpectrumDecoder
- decodeCompressed_() : Base64
- decodeIntegers() : Base64
- decodeIntegersCompressed_() : Base64
- decodeIntegersUncompressed_() : Base64
- decodeNP() : MSNumpressCoder
- decodeNPInternal_() : MSNumpressCoder
- decodeNPRaw() : MSNumpressCoder
- decodeSingleString() : Base64
- decodeStrings() : Base64
- decodeUncompressed_() : Base64
- deconvolutePeak_() : PeakPickerCWT
- DeconvPeak() : DeconvPeak
- DefaultParamHandler() : DefaultParamHandler
- defaultsToParam_() : DefaultParamHandler
- defineDefaults() : DiaPrescore
- defineLCElutionPeakParametersFromMSPeak() : LCElutionPeak
- deisotopeAndSingleCharge() : Deisotoper
- deisotopeAndSingleChargeMSSpectrum_() : NucleicAcidSearchEngine
- Deisotoper() : Deisotoper
- deleteData_() : GradientVisualizer
- deletePredecessorState() : HMMState
- deleteRow() : LPWrapper
- deleteSetNull_() : MzMLSwathFileConsumer
- deleteSuccessorState() : HMMState
- delta() : SysInfo::MemUsage
- delta_D() : SpectraSTSimilarityScore
- DeltaMass() : MultiplexDeltaMasses::DeltaMass
- DeNovoAlgorithm() : DeNovoAlgorithm
- DeNovoIdentification() : DeNovoIdentification
- DeNovoIonScoring() : DeNovoIonScoring
- DeNovoPostScoring() : DeNovoPostScoring
- DepletedIDPool() : DepletedIDPool
- derivative() : BSpline2d , LinearInterpolation< Key, Value >
- derivatives() : BSpline2d , CubicSpline2d
- deriveChargeStates() : SHFeature
- descriptionUpdated_() : TOPPASBase
- deselectAll() : Annotations1DContainer
- deselectItemAt() : Annotations1DContainer
- destroy() : IsotopeWavelet , IsotopeWaveletTransform< PeakType >::TransSpectrum
- destroyProblem() : LibSVMEncoder
- DetectabilitySimulation() : DetectabilitySimulation
- detectElutionPeaks_() : ElutionPeakDetection
- detectingTransitions() : MRMAssay
- detectingTransitionsCompound() : MRMAssay
- detectPeaks() : ElutionPeakDetection
- determineChargeState_() : PeakPickerCWT
- determineHighestScoringPermutations_() : AScore
- determinePeptideIntensitiesCentroided_() : FeatureFinderMultiplexAlgorithm
- determinePeptideIntensitiesProfile_() : FeatureFinderMultiplexAlgorithm
- df() : EGHFitter1D::EGHFitterFunctor , EGHTraceFitter::EGHTraceFunctor , EmgFitter1D::EgmFitterFunctor , GaussTraceFitter::GaussTraceFunctor , LevMarqFitter1D::GenericFunctor , OptimizePick::OptPeakFunctor , TraceFitter::GenericFunctor , TwoDOptimization::TwoDOptFunctor
- dfs_ccsplit_visitor() : IDBoostGraph::dfs_ccsplit_visitor
- dfsVisit_() : TOPPASScene
- dia_by_ion_score() : DIAScoring
- dia_isotope_scores() : DIAScoring
- dia_massdiff_score() : DIAScoring
- dia_ms1_isotope_scores() : DIAScoring
- dia_ms1_massdiff_score() : DIAScoring
- diagonal() : DIntervalBase< D >
- diaIsotopeScoresSub_() : DIAScoring
- DiaPrescore() : DiaPrescore
- DIAScoring() : DIAScoring
- diff_str_() : SysInfo::MemUsage
- diffEstimatedEmpirical_() : FalseDiscoveryRate
- digest() : DigestSimulation , EnzymaticDigestionLogModel , ProteaseDigestion , RNaseDigestion
- digestAfterTokenize_() : EnzymaticDigestion
- digestDatabase() : OPXLHelper
- Digestion() : Digestion
- DigestionEnzyme() : DigestionEnzyme
- DigestionEnzymeDB() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- DigestionEnzymeProtein() : DigestionEnzymeProtein
- DigestionFilter() : IDFilter::DigestionFilter
- DigestionVisualizer() : DigestionVisualizer
- DigestSimulation() : DigestSimulation
- digestUnmodified() : EnzymaticDigestion
- dimensionsize() : DistanceMatrix< Value >
- DIntervalBase() : DIntervalBase< D >
- dirNameValid() : TOPPASOutputFilesDialog
- disable_() : ToolsDialog
- disableCutoff() : TOPPViewOpenDialog
- disableDimension() : TOPPViewOpenDialog
- disabledValue() : IDFilter::PeptideDigestionFilter
- disableLocation() : TOPPViewOpenDialog
- disableTransition() : HiddenMarkovModel
- disableTransition_() : HiddenMarkovModel
- disableTransitions() : HiddenMarkovModel
- disconnect() : _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
- discover_vertex() : IDBoostGraph::dfs_ccsplit_visitor
- dist_() : LocalLinearMap
- distance_() : FeatureDistance
- DistanceMatrix() : DistanceMatrix< Value >
- DistanceParams_() : FeatureDistance::DistanceParams_
- distribute_() : LogStreamBuf
- divideByGCD() : Weights
- DivisionByZero() : DivisionByZero
- doCacheFile_() : SwathFile
- doCleanup_() : MSDataWritingConsumer , NoopMSDataWritingConsumer
- DocumentIdentifier() : DocumentIdentifier
- DocumentIdentifierVisualizer() : DocumentIdentifierVisualizer
- DocumentIDTagger() : DocumentIDTagger
- doDataNormalization_() : OpenSwathCalibrationWorkflow
- doesParamChangeInvalidate_() : TOPPASToolVertex
- domParseChromatogram() : MzMLSpectrumDecoder
- domParseIndexedEnd_() : IndexedMzMLDecoder
- domParseSpectrum() : MzMLSpectrumDecoder
- domParseString_() : MzMLSpectrumDecoder
- done() : MascotRemoteQuery , NetworkGetRequest
- doPopulateSpectraWithData_() : MzXMLHandler
- dot_bias() : SpectraSTSimilarityScore
- DoubleTolerancePredicate_() : ListUtils::DoubleTolerancePredicate_
- downloadProgress() : MascotRemoteQuery
- downloadTOPPASfromHomepage_() : TOPPASBase
- DPosition() : DPosition< D, TCoordinateType >
- dragEnterEvent() : EnhancedTabBar , EnhancedWorkspace , SpectrumWidget , TOPPASInputFilesDialog , TOPPASWidget
- dragMoveEvent() : EnhancedWorkspace , SpectrumWidget , TOPPASWidget
- DRange() : DRange< D >
- draw() : Annotation1DCaret , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem , Annotation1DTextItem
- drawAlignment() : Spectrum1DCanvas
- drawAnnotations() : Spectrum1DCanvas
- drawAxesLegend_() : Spectrum3DOpenGLCanvas
- drawBoundingBox_() : Annotation1DItem
- drawCoordinates_() : Spectrum1DCanvas , Spectrum2DCanvas
- drawDashedLine_() : Spectrum1DCanvas
- drawDeltas_() : Spectrum1DCanvas , Spectrum2DCanvas
- drawHighlightedPeak_() : Spectrum1DCanvas
- drawMZAtInterestingPeaks_() : Spectrum1DCanvas
- drawText_() : SpectrumCanvas
- driftScoring() : IonMobilityScoring
- driftScoringMS1() : IonMobilityScoring
- driftScoringMS1Contrast() : IonMobilityScoring
- dropEvent() : EnhancedTabBar , EnhancedWorkspace , SpectrumWidget , TOPPASInputFilesDialog , TOPPASWidget
- dropOnTab() : EnhancedTabBar
- dropOnWidget() : EnhancedTabBar
- dropReceived() : EnhancedWorkspace , SpectrumWidget
- dryRunFinished() : TOPPASScene
- DTA2DFile() : DTA2DFile
- DTAFile() : DTAFile
- dump() : HiddenMarkovModel
- dunnIndices() : ClusterAnalyzer
- dynprog_() : SpectrumCheapDPCorr