| OpenMS 2.5.0

CVMappingTerm.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Andreas Bertsch $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/DATASTRUCTURES/String.h>
38 #include <OpenMS/OpenMSConfig.h>
39
40 namespace OpenMS
41 {
49 class OPENMS_DLLAPI CVMappingTerm
51 {
52 public:
53
55 CVMappingTerm();
56
58 CVMappingTerm(const CVMappingTerm& rhs);
59
61 virtual ~CVMappingTerm();
62
64 CVMappingTerm& operator=(const CVMappingTerm& rhs);
65
69 void setAccession(const String& accession);
71
73 const String& getAccession() const;
74
76 void setUseTermName(bool use_term_name);
77
79 bool getUseTermName() const;
80
82 void setUseTerm(bool use_term);
83
85 bool getUseTerm() const;
86
88 void setTermName(const String& term_name);
89
91 const String& getTermName() const;
92
94 void setIsRepeatable(bool is_repeatable);
95
97 bool getIsRepeatable() const;
98
100 void setAllowChildren(bool allow_children);
101
103 bool getAllowChildren() const;
104
106 void setCVIdentifierRef(const String& cv_identifier_ref);
107
109 const String& getCVIdentifierRef() const;
111
115 bool operator==(const CVMappingTerm& rhs) const;
117
119 bool operator!=(const CVMappingTerm& rhs) const;
120 //}
121
122 protected:
123
124 String accession_;
125
126 bool use_term_name_;
127
128 bool use_term_;
129
130 String term_name_;
131
132 bool is_repeatable_;
133
134 bool allow_children_;
135
136 String cv_identifier_ref_;
137 };
138
139 } // namespace OpenMS
140
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::CVMappingTerm::is_repeatable_
bool is_repeatable_
Definition: CVMappingTerm.h:132
OpenMS::CVMappingTerm::cv_identifier_ref_
String cv_identifier_ref_
Definition: CVMappingTerm.h:136
OpenMS::CVMappingTerm::term_name_
String term_name_
Definition: CVMappingTerm.h:130
KDTree::operator!=
bool operator!=(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition: KDTree.h:824
OpenMS::CVMappingTerm::use_term_
bool use_term_
Definition: CVMappingTerm.h:128
OpenMS::CVMappingTerm::accession_
String accession_
Definition: CVMappingTerm.h:124
String.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::CVMappingTerm::allow_children_
bool allow_children_
Definition: CVMappingTerm.h:134
OpenMS::CVMappingTerm::use_term_name_
bool use_term_name_
Definition: CVMappingTerm.h:126
KDTree::operator==
bool operator==(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition: KDTree.h:806