| OpenMS 2.5.0

ProteinIdentification Member List

This is the complete list of members for ProteinIdentification, including all inherited members.

addPrimaryMSRunPath(const String &s, bool raw=false) | ProteinIdentification |
addPrimaryMSRunPath(const StringList &s, bool raw=false) | ProteinIdentification |
assignRanks() | ProteinIdentification |
AVERAGE enum value | ProteinIdentification |
clearMetaInfo() | MetaInfoInterface |
computeCoverage(const std::vector< PeptideIdentification > &pep_ids) | ProteinIdentification |
computeModifications(const std::vector< PeptideIdentification > &pep_ids, const StringList &skip_modifications) | ProteinIdentification |
createIfNotExists_() | MetaInfoInterface | inline protected
date_ | ProteinIdentification | protected
fillIndistinguishableGroupsWithSingletons() | ProteinIdentification |
findHit(const String &accession) | ProteinIdentification |
getDateTime() const | ProteinIdentification |
getHits() const | ProteinIdentification |
getHits() | ProteinIdentification |
getIdentifier() const | ProteinIdentification |
getIndistinguishableProteins() const | ProteinIdentification |
getIndistinguishableProteins() | ProteinIdentification |
getInferenceEngine() const | ProteinIdentification |
getInferenceEngineVersion() const | ProteinIdentification |
getKeys(std::vector< String > &keys) const | MetaInfoInterface |
getKeys(std::vector< UInt > &keys) const | MetaInfoInterface |
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getPrimaryMSRunPath(StringList &output, bool raw=false) const | ProteinIdentification |
getProteinGroups() const | ProteinIdentification |
getProteinGroups() | ProteinIdentification |
getScoreType() const | ProteinIdentification |
getSearchEngine() const | ProteinIdentification |
getSearchEngineVersion() const | ProteinIdentification |
getSearchParameters() const | ProteinIdentification |
getSearchParameters() | ProteinIdentification |
getSignificanceThreshold() const | ProteinIdentification |
hasInferenceData() const | ProteinIdentification |
hasInferenceEngineAsSearchEngine() const | ProteinIdentification |
higher_score_better_ | ProteinIdentification | protected
HitType typedef | ProteinIdentification |
id_ | ProteinIdentification | protected
indistinguishable_proteins_ | ProteinIdentification | protected
insertHit(const ProteinHit &input) | ProteinIdentification |
insertHit(ProteinHit &&input) | ProteinIdentification |
insertIndistinguishableProteins(const ProteinGroup &group) | ProteinIdentification |
insertProteinGroup(const ProteinGroup &group) | ProteinIdentification |
isHigherScoreBetter() const | ProteinIdentification |
isMetaEmpty() const | MetaInfoInterface |
meta_ | MetaInfoInterface | protected
MetaInfoInterface() | MetaInfoInterface |
MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface |
MetaInfoInterface(MetaInfoInterface &&) noexcept | MetaInfoInterface |
metaRegistry() | MetaInfoInterface | static
metaValueExists(const String &name) const | MetaInfoInterface |
metaValueExists(UInt index) const | MetaInfoInterface |
MONOISOTOPIC enum value | ProteinIdentification |
NamesOfPeakMassType | ProteinIdentification | static
operator!=(const ProteinIdentification &rhs) const | ProteinIdentification |
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface |
operator=(const ProteinIdentification &)=default | ProteinIdentification |
operator=(ProteinIdentification &&)=default | ProteinIdentification |
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs) | MetaInfoInterface |
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept | MetaInfoInterface |
operator==(const ProteinIdentification &rhs) const | ProteinIdentification |
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface |
PeakMassType enum name | ProteinIdentification |
peptideIDsMergeable(const ProteinIdentification &id_run, const String &experiment_type) const | ProteinIdentification |
protein_groups_ | ProteinIdentification | protected
protein_hits_ | ProteinIdentification | protected
protein_score_type_ | ProteinIdentification | protected
protein_significance_threshold_ | ProteinIdentification | protected
ProteinIdentification() | ProteinIdentification |
ProteinIdentification(const ProteinIdentification &)=default | ProteinIdentification |
ProteinIdentification(ProteinIdentification &&)=default | ProteinIdentification |
removeMetaValue(const String &name) | MetaInfoInterface |
removeMetaValue(UInt index) | MetaInfoInterface |
search_engine_ | ProteinIdentification | protected
search_engine_version_ | ProteinIdentification | protected
search_parameters_ | ProteinIdentification | protected
setDateTime(const DateTime &date) | ProteinIdentification |
setHigherScoreBetter(bool higher_is_better) | ProteinIdentification |
setHits(const std::vector< ProteinHit > &hits) | ProteinIdentification |
setIdentifier(const String &id) | ProteinIdentification |
setInferenceEngine(const String &search_engine) | ProteinIdentification |
setInferenceEngineVersion(const String &inference_engine_version) | ProteinIdentification |
setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface |
setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface |
setPrimaryMSRunPath(const StringList &s, bool raw=false) | ProteinIdentification |
setPrimaryMSRunPath(const StringList &s, MSExperiment &e) | ProteinIdentification |
setScoreType(const String &type) | ProteinIdentification |
setSearchEngine(const String &search_engine) | ProteinIdentification |
setSearchEngineVersion(const String &search_engine_version) | ProteinIdentification |
setSearchParameters(const SearchParameters &search_parameters) | ProteinIdentification |
setSearchParameters(SearchParameters &&search_parameters) | ProteinIdentification |
setSignificanceThreshold(double value) | ProteinIdentification |
SIZE_OF_PEAKMASSTYPE enum value | ProteinIdentification |
sort() | ProteinIdentification |
~MetaInfoInterface() | MetaInfoInterface |
~ProteinIdentification() | ProteinIdentification | virtual