| OpenMS 2.5.0

TargetedSpectraExtractor Member List

This is the complete list of members for TargetedSpectraExtractor, including all inherited members.

annotateSpectra(const std::vector< MSSpectrum > &spectra, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &annotated_spectra, FeatureMap &features, bool compute_features=true) const | TargetedSpectraExtractor |
annotateSpectra(const std::vector< MSSpectrum > &spectra, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &annotated_spectra) const | TargetedSpectraExtractor |
check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
extractSpectra(const MSExperiment &experiment, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &extracted_spectra, FeatureMap &extracted_features, bool compute_features=true) const | TargetedSpectraExtractor |
extractSpectra(const MSExperiment &experiment, const TargetedExperiment &targeted_exp, std::vector< MSSpectrum > &extracted_spectra) const | TargetedSpectraExtractor |
fwhm_threshold_ | TargetedSpectraExtractor | private
fwhm_weight_ | TargetedSpectraExtractor | private
getDefaultParameters(Param &params) const | TargetedSpectraExtractor |
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
matchSpectrum(const MSSpectrum &input_spectrum, const Comparator &cmp, std::vector< Match > &matches) | TargetedSpectraExtractor |
min_match_score_ | TargetedSpectraExtractor | private
min_select_score_ | TargetedSpectraExtractor | private
mz_tolerance_ | TargetedSpectraExtractor | private
mz_unit_is_Da_ | TargetedSpectraExtractor | private
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
peak_height_max_ | TargetedSpectraExtractor | private
peak_height_min_ | TargetedSpectraExtractor | private
pickSpectrum(const MSSpectrum &spectrum, MSSpectrum &picked_spectrum) const | TargetedSpectraExtractor |
rt_window_ | TargetedSpectraExtractor | private
scoreSpectra(const std::vector< MSSpectrum > &annotated_spectra, const std::vector< MSSpectrum > &picked_spectra, FeatureMap &features, std::vector< MSSpectrum > &scored_spectra, bool compute_features=true) const | TargetedSpectraExtractor |
scoreSpectra(const std::vector< MSSpectrum > &annotated_spectra, const std::vector< MSSpectrum > &picked_spectra, std::vector< MSSpectrum > &scored_spectra) const | TargetedSpectraExtractor |
selectSpectra(const std::vector< MSSpectrum > &scored_spectra, const FeatureMap &features, std::vector< MSSpectrum > &selected_spectra, FeatureMap &selected_features, bool compute_features=true) const | TargetedSpectraExtractor |
selectSpectra(const std::vector< MSSpectrum > &scored_spectra, std::vector< MSSpectrum > &selected_spectra) const | TargetedSpectraExtractor |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
snr_weight_ | TargetedSpectraExtractor | private
subsections_ | DefaultParamHandler | protected
targetedMatching(const std::vector< MSSpectrum > &spectra, const Comparator &cmp, FeatureMap &features) | TargetedSpectraExtractor |
TargetedSpectraExtractor() | TargetedSpectraExtractor |
tic_weight_ | TargetedSpectraExtractor | private
top_matches_to_report_ | TargetedSpectraExtractor | private
untargetedMatching(const std::vector< MSSpectrum > &spectra, const Comparator &cmp, FeatureMap &features) | TargetedSpectraExtractor |
updateMembers_() override | TargetedSpectraExtractor | protected virtual
use_gauss_ | TargetedSpectraExtractor | private
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~TargetedSpectraExtractor() override=default | TargetedSpectraExtractor |