| OpenMS 2.5.0

MultiplexFilteringCentroided.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Lars Nilse $
32 // $Authors: Lars Nilse $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/KERNEL/BaseFeature.h>
38 #include <OpenMS/KERNEL/StandardTypes.h>
39 #include <OpenMS/CONCEPT/ProgressLogger.h>
40 #include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h>
41 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.h>
42 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.h>
43 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.h>
44 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.h>
45 #include <OpenMS/MATH/MISC/CubicSpline2d.h>
46
47 #include <vector>
48 #include <algorithm>
49 #include <iostream>
50
51 namespace OpenMS
52 {
65 class OPENMS_DLLAPI MultiplexFilteringCentroided :
66 public MultiplexFiltering
67 {
68 public:
85 MultiplexFilteringCentroided(const MSExperiment& exp_centroided, const std::vector<MultiplexIsotopicPeakPattern>& patterns, int isotopes_per_peptide_min, int isotopes_per_peptide_max, double intensity_cutoff, double rt_band, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling, String averagine_type="peptide");
86
93 std::vector<MultiplexFilteredMSExperiment> filter();
94
95 };
96
97 }
98
MultiplexFiltering.h
OpenMS::String
A more convenient string class.
Definition: String.h:58
MultiplexFilteredPeak.h
OpenMS::MultiplexFiltering
base class for filtering centroided and profile data for peak patterns
Definition: MultiplexFiltering.h:73
CubicSpline2d.h
OpenMS::MSExperiment
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
StandardTypes.h
PeakPickerHiRes.h
OpenMS::MultiplexFilteringCentroided
filters centroided data for peak patterns
Definition: MultiplexFilteringCentroided.h:65
ProgressLogger.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
BaseFeature.h
MultiplexFilteredMSExperiment.h
MultiplexIsotopicPeakPattern.h