| OpenMS 2.5.0

BackgroundIntensityBin.h
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2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
6 //
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29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Lukas Mueller, Markus Mueller $
33 // --------------------------------------------------------------------------
34 //
36 //
37 // PEAK DETECTION OF FOURIER TRANSFORME MS INSTRUMENT DATA
38 //
39 // written by Markus Mueller, markus.mueller@imsb.biol.ethz.ch
40 // ( and Lukas Mueller, Lukas.Mueller@imsb.biol.ethz.ch)
41 // October 2005
42 //
43 // Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch
44 // December 2010
45 //
46 // Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich
47 //
48 //
49
50 #pragma once
51
52 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
53
54 #include <vector>
55 #include <map>
56
57 namespace OpenMS
58 {
59
60 class MSPeak;
61
62 class SUPERHIRN_DLLAPI BackgroundIntensityBin
63 {
64
65 private:
66
67 // do not allow default constructor
68 BackgroundIntensityBin()
69 {
70 }
71
72 // mz and tr coordinates of the bin:
73 double mzCoord_;
74 double trCoord_;
75 double zCoord_;
76
77 std::vector<double> intensityMap_;
78 std::map<double, double> intensityHist_;
79
80 double mean_;
81 void computeIntensityHist();
82
83 public:
84
85 virtual ~BackgroundIntensityBin();
86
87 // copy constructor
88 BackgroundIntensityBin(const BackgroundIntensityBin &);
89
90 // assignment operator
91 BackgroundIntensityBin & operator=(const BackgroundIntensityBin &);
92
93 BackgroundIntensityBin(double, double);
94
95 /*
96 * @brief Check if a peak belongs to this intensity bin
97 */
98 bool checkBelonging(MSPeak *);
99
100 /*
101 * @brief Add intensity to BackgroundIntensityBin
102 */
103 void addIntensity(double);
104
105 /*
106 * @brief add peak to BackgroundIntensityBin
107 */
108 void addMSPeak(MSPeak *);
109 /*
110 * @brief Process collected intensities in the map
111 */
112 void processIntensities();
113
114 std::vector<double> * getIntensityMap();
115 std::map<double, double> * getIntensityHist();
116 double getMean();
117 };
118
119 } // ns
120
OpenMS::BackgroundIntensityBin::intensityHist_
std::map< double, double > intensityHist_
Definition: BackgroundIntensityBin.h:78
OpenMS::BackgroundIntensityBin::mean_
double mean_
Definition: BackgroundIntensityBin.h:80
OpenMS::MSPeak
Definition: MSPeak.h:65
OpenMS::BackgroundIntensityBin::zCoord_
double zCoord_
Definition: BackgroundIntensityBin.h:75
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::BackgroundIntensityBin::BackgroundIntensityBin
BackgroundIntensityBin()
Definition: BackgroundIntensityBin.h:68
OpenMS::BackgroundIntensityBin
Definition: BackgroundIntensityBin.h:62
OpenMS::BackgroundIntensityBin::intensityMap_
std::vector< double > intensityMap_
Definition: BackgroundIntensityBin.h:77
OpenMS::BackgroundIntensityBin::mzCoord_
double mzCoord_
Definition: BackgroundIntensityBin.h:73
OpenMS::BackgroundIntensityBin::trCoord_
double trCoord_
Definition: BackgroundIntensityBin.h:74