| OpenMS 2.5.0

RTSimulation Member List

This is the complete list of members for RTSimulation, including all inherited members.

calculateMT_(SimTypes::FeatureMapSim &features, std::vector< double > &predicted_retention_times) | RTSimulation | private
check_defaults_ | DefaultParamHandler | protected
createExperiment(SimTypes::MSSimExperiment &experiment) | RTSimulation |
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
egh_tau_location_ | RTSimulation | private
egh_tau_scale_ | RTSimulation | private
egh_variance_location_ | RTSimulation | private
egh_variance_scale_ | RTSimulation | private
error_name_ | DefaultParamHandler | protected
getChargeContribution_(Map< String, double > &q_cterm, Map< String, double > &q_nterm, Map< String, double > &q_aa_basic, Map< String, double > &q_aa_acidic) | RTSimulation | private
getDefaults() const | DefaultParamHandler |
getGradientTime() const | RTSimulation |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
gradient_max_ | RTSimulation | private
gradient_min_ | RTSimulation | private
isRTColumnOn() const | RTSimulation |
noRTColumn_(SimTypes::FeatureMapSim &) | RTSimulation | private
operator=(const RTSimulation &source) | RTSimulation |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
predictContaminantsRT(SimTypes::FeatureMapSim &) | RTSimulation |
predictRT(SimTypes::FeatureMapSim &features) | RTSimulation |
rnd_gen_ | RTSimulation | protected
rt_model_file_ | RTSimulation | private
rt_sampling_rate_ | RTSimulation | private
RTSimulation() | RTSimulation |
RTSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr random_generator) | RTSimulation | explicit
RTSimulation(const RTSimulation &source) | RTSimulation |
setDefaultParams_() | RTSimulation | private
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
smoothRTDistortion_(SimTypes::MSSimExperiment &experiment) | RTSimulation | private
subsections_ | DefaultParamHandler | protected
total_gradient_time_ | RTSimulation | private
updateMembers_() override | RTSimulation | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
wrapSVM(std::vector< AASequence > &peptide_sequences, std::vector< double > &predicted_retention_times) | RTSimulation |
~DefaultParamHandler() | DefaultParamHandler | virtual
~RTSimulation() override | RTSimulation |