| OpenMS 2.5.0

ProteinIdentificationVisualizer.h
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1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 // OpenMS_GUI config
38 #include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
39
40 //OpenMS
41 #include <OpenMS/METADATA/ProteinIdentification.h>
42 #include <OpenMS/VISUAL/VISUALIZER/BaseVisualizer.h>
43 #include <OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h>
44
45 namespace OpenMS
46 {
47 class MetaDataBrowser;
48
54 class OPENMS_GUI_DLLAPI ProteinIdentificationVisualizer :
55 public BaseVisualizerGUI,
56 public BaseVisualizer<ProteinIdentification>
57 {
58 Q_OBJECT
59
60 public:
62 ProteinIdentificationVisualizer(bool editable = false, QWidget * parent = 0, MetaDataBrowser * caller = nullptr);
63
65 void load(ProteinIdentification & s, int tree_item_id);
66
67 public slots:
68
69 //Docu in base class
70 void store() override;
71
72 protected slots:
73
81 void updateTree_();
82
84 void undo_();
85
86 protected:
87
89 MetaDataBrowser * pidv_caller_;
91 int tree_id_;
92
94
95 QLineEdit * engine_;
96 QLineEdit * engine_version_;
97 QLineEdit * identification_date_;
98 QLineEdit * identification_threshold_;
99 QLineEdit * identifier_;
100 QLineEdit * score_type_;
101 QComboBox * higher_better_;
102
103 QLineEdit * db_;
104 QLineEdit * db_version_;
105 QLineEdit * taxonomy_;
106 QLineEdit * charges_;
107 QLineEdit * missed_cleavages_;
108 QLineEdit * peak_tolerance_;
109 QLineEdit * precursor_tolerance_;
110 QComboBox * mass_type_;
111 QLineEdit * enzyme_;
113
115 QLineEdit * filter_threshold_;
116 };
117 }
QLineEdit
ProteinIdentification.h
QWidget
OpenMS::ProteinIdentificationVisualizer::tree_id_
int tree_id_
The id of the item in the tree.
Definition: ProteinIdentificationVisualizer.h:91
OpenMS::ProteinIdentificationVisualizer::taxonomy_
QLineEdit * taxonomy_
Definition: ProteinIdentificationVisualizer.h:105
OpenMS::ProteinIdentificationVisualizer::db_version_
QLineEdit * db_version_
Definition: ProteinIdentificationVisualizer.h:104
OpenMS::ProteinIdentificationVisualizer::db_
QLineEdit * db_
Definition: ProteinIdentificationVisualizer.h:103
OpenMS::ProteinIdentificationVisualizer::filter_threshold_
QLineEdit * filter_threshold_
Threshold for filtering by score.
Definition: ProteinIdentificationVisualizer.h:115
OpenMS::ProteinIdentificationVisualizer::precursor_tolerance_
QLineEdit * precursor_tolerance_
Definition: ProteinIdentificationVisualizer.h:109
OpenMS::BaseVisualizerGUI
A base class for all visualizer classes.
Definition: BaseVisualizerGUI.h:64
OpenMS::ProteinIdentificationVisualizer::mass_type_
QComboBox * mass_type_
Definition: ProteinIdentificationVisualizer.h:110
BaseVisualizer.h
OpenMS::ProteinIdentification
Representation of a protein identification run.
Definition: ProteinIdentification.h:71
OpenMS::ProteinIdentificationVisualizer::enzyme_
QLineEdit * enzyme_
Definition: ProteinIdentificationVisualizer.h:111
OpenMS::BaseVisualizer
A base class for all visualizer classes.
Definition: BaseVisualizer.h:53
OpenMS::ProteinIdentificationVisualizer
Class that displays all meta information for ProteinIdentification objects.
Definition: ProteinIdentificationVisualizer.h:54
BaseVisualizerGUI.h
OpenMS::MetaDataBrowser
A meta data visualization widget.
Definition: MetaDataBrowser.h:104
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::ProteinIdentificationVisualizer::charges_
QLineEdit * charges_
Definition: ProteinIdentificationVisualizer.h:106
OpenMS::ProteinIdentificationVisualizer::peak_tolerance_
QLineEdit * peak_tolerance_
Definition: ProteinIdentificationVisualizer.h:108
OpenMS::ProteinIdentificationVisualizer::identifier_
QLineEdit * identifier_
Definition: ProteinIdentificationVisualizer.h:99
OpenMS::ProteinIdentificationVisualizer::pidv_caller_
MetaDataBrowser * pidv_caller_
Pointer to MetaDataBrowser.
Definition: ProteinIdentificationVisualizer.h:89
OpenMS::ProteinIdentificationVisualizer::engine_
QLineEdit * engine_
Definition: ProteinIdentificationVisualizer.h:95
OpenMS::ProteinIdentificationVisualizer::missed_cleavages_
QLineEdit * missed_cleavages_
Definition: ProteinIdentificationVisualizer.h:107
OpenMS::ProteinIdentificationVisualizer::score_type_
QLineEdit * score_type_
Definition: ProteinIdentificationVisualizer.h:100
OpenMS::ProteinIdentificationVisualizer::engine_version_
QLineEdit * engine_version_
Definition: ProteinIdentificationVisualizer.h:96
OpenMS::ProteinIdentificationVisualizer::identification_date_
QLineEdit * identification_date_
Definition: ProteinIdentificationVisualizer.h:97
OpenMS::ProteinIdentificationVisualizer::higher_better_
QComboBox * higher_better_
Definition: ProteinIdentificationVisualizer.h:101
OpenMS::ProteinIdentificationVisualizer::identification_threshold_
QLineEdit * identification_threshold_
Definition: ProteinIdentificationVisualizer.h:98