| OpenMS 2.5.0

BackgroundControl.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Lukas Mueller, Markus Mueller $
33 // --------------------------------------------------------------------------
34 //
36 //
37 // PEAK DETECTION OF FOURIER TRANSFORME MS INSTRUMENT DATA
38 //
39 // written by Markus Mueller, markus.mueller@imsb.biol.ethz.ch
40 // ( and Lukas Mueller, Lukas.Mueller@imsb.biol.ethz.ch)
41 // October 2005
42 //
43 // Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch
44 // December 2010
45 //
46 // Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich
47 //
48 //
49
50 #pragma once
51
52 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
53 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.h>
54 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidPeak.h>
55
56 #include <list>
57 #include <map>
58
59 namespace OpenMS
60 {
61
62 class SUPERHIRN_DLLAPI BackgroundControl
63 {
64
65 private:
66
67 std::map<double, std::map<double, BackgroundIntensityBin> > intensityBinMap;
68
69 void init();
70
71 public:
72
73 ~BackgroundControl();
74
75 BackgroundControl();
76
77 void addPeakMSScan(double, std::list<CentroidPeak> * peakList);
78
79 double getBackgroundLevel(double mz, double tr);
80
81 // find a key in the intensity map:
82 std::map<double, std::map<double, BackgroundIntensityBin> >::iterator findTrKey(double);
83
84 // find a key in the m/z map:
85 std::map<double, BackgroundIntensityBin>::iterator findMzKey(double mz, std::map<double, BackgroundIntensityBin> *);
86
87 void processIntensityMaps();
88
89 // overload operators:
90 bool operator==(const BackgroundControl &);
91 BackgroundControl & operator<=(const BackgroundControl &);
92 BackgroundControl & operator>=(const BackgroundControl &);
93 BackgroundControl & operator<(const BackgroundControl &);
94 BackgroundControl & operator>(const BackgroundControl &);
95
96 };
97
98 } // namespace
99
OpenMS::operator<
bool operator<(const MultiplexDeltaMasses &dm1, const MultiplexDeltaMasses &dm2)
OpenMS::BackgroundControl
Definition: BackgroundControl.h:62
BackgroundIntensityBin.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::BackgroundControl::intensityBinMap
std::map< double, std::map< double, BackgroundIntensityBin > > intensityBinMap
Definition: BackgroundControl.h:67
CentroidPeak.h
KDTree::operator==
bool operator==(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition: KDTree.h:806