| OpenMS 2.5.0

Classes | Namespaces | Functions
StatisticFunctions.h File Reference
`#include <vector>`
`#include <OpenMS/CONCEPT/Exception.h>`
`#include <OpenMS/CONCEPT/Types.h>`
`#include <boost/accumulators/accumulators.hpp>`
`#include <boost/accumulators/statistics/covariance.hpp>`
`#include <boost/accumulators/statistics/mean.hpp>`
`#include <boost/accumulators/statistics/stats.hpp>`
`#include <boost/accumulators/statistics/variance.hpp>`
`#include <boost/accumulators/statistics/variates/covariate.hpp>`
`#include <boost/function/function_base.hpp>`
`#include <boost/lambda/casts.hpp>`
`#include <boost/lambda/lambda.hpp>`
`#include <iterator>`
`#include <algorithm>`

Go to the source code of this file.

## Classes

struct | SummaryStatistics< T >
| Helper class to gather (and dump) some statistics from a e.g. vector<double>. More...

## Namespaces

| OpenMS
| Main OpenMS namespace.
| OpenMS::Math
| Math namespace.

## Functions

template<typename IteratorType >
static void | checkIteratorsNotNULL (IteratorType begin, IteratorType end)
| Helper function checking if two iterators are not equal. More...
template<typename IteratorType >
static void | checkIteratorsEqual (IteratorType begin, IteratorType end)
| Helper function checking if two iterators are equal. More...
template<typename IteratorType1 , typename IteratorType2 >
static void | checkIteratorsAreValid (IteratorType1 begin_b, IteratorType1 end_b, IteratorType2 begin_a, IteratorType2 end_a)
| Helper function checking if an iterator and a co-iterator both have a next element. More...
template<typename IteratorType >
static double | sum (IteratorType begin, IteratorType end)
| Calculates the sum of a range of values. More...
template<typename IteratorType >
static double | mean (IteratorType begin, IteratorType end)
| Calculates the mean of a range of values. More...
template<typename IteratorType >
static double | median (IteratorType begin, IteratorType end, bool sorted=false)
| Calculates the median of a range of values. More...
template<typename IteratorType >
double | MAD (IteratorType begin, IteratorType end, double median_of_numbers)
| median absolute deviation (MAD) More...
template<typename IteratorType >
static double | quantile1st (IteratorType begin, IteratorType end, bool sorted=false)
| Calculates the first quantile of a range of values. More...
template<typename IteratorType >
static double | quantile3rd (IteratorType begin, IteratorType end, bool sorted=false)
| Calculates the third quantile of a range of values. More...
template<typename IteratorType >
static double | variance (IteratorType begin, IteratorType end, double mean=std::numeric_limits< double >::max())
| Calculates the variance of a range of values. More...
template<typename IteratorType >
static double | sd (IteratorType begin, IteratorType end, double mean=std::numeric_limits< double >::max())
| Calculates the standard deviation of a range of values. More...
template<typename IteratorType >
static double | absdev (IteratorType begin, IteratorType end, double mean=std::numeric_limits< double >::max())
| Calculates the absolute deviation of a range of values. More...
template<typename IteratorType1 , typename IteratorType2 >
static double | covariance (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
| Calculates the covariance of two ranges of values. More...
template<typename IteratorType1 , typename IteratorType2 >
static double | meanSquareError (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
| Calculates the mean square error for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename IteratorType1 , typename IteratorType2 >
static double | classificationRate (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
| Calculates the classification rate for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename IteratorType1 , typename IteratorType2 >
static double | matthewsCorrelationCoefficient (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
| Calculates the Matthews correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename IteratorType1 , typename IteratorType2 >
static double | pearsonCorrelationCoefficient (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
| Calculates the Pearson correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) More...
template<typename Value >
static void | computeRank (std::vector< Value > &w)
| Replaces the elements in vector `w` by their ranks. More...
template<typename IteratorType1 , typename IteratorType2 >
static double | rankCorrelationCoefficient (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)
| calculates the rank correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) More...