| OpenMS 2.5.0

IDBoostGraph Member List

This is the complete list of members for IDBoostGraph, including all inherited members.

addPeptideAndAssociatedProteinsWithRunInfo_(PeptideIdentification &spectrum, std::unordered_map< unsigned, unsigned > &indexToPrefractionationGroup, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map, std::unordered_map< std::string, ProteinHit *> &accession_map, Size use_top_psms) | IDBoostGraph | private
addPeptideIDWithAssociatedProteins_(PeptideIdentification &spectrum, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map, const std::unordered_map< std::string, ProteinHit *> &accession_map, Size use_top_psms) | IDBoostGraph | private
addVertexWithLookup_(IDPointer &ptr, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map) | IDBoostGraph | private
annotateIndistProteins(bool addSingletons=true) | IDBoostGraph |
annotateIndistProteins_(const Graph &fg, bool addSingletons) | IDBoostGraph | private
applyFunctorOnCCs(const std::function< unsigned long(Graph &)> &functor) | IDBoostGraph |
applyFunctorOnCCsST(const std::function< void(Graph &)> &functor) | IDBoostGraph |
buildGraph_(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms) | IDBoostGraph | private
buildGraph_(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_unassigned_ids) | IDBoostGraph | private
buildGraphWithRunInfo_(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_unassigned_ids, const ExperimentalDesign &ed) | IDBoostGraph | private
buildGraphWithRunInfo_(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, const ExperimentalDesign &ed) | IDBoostGraph | private
calculateAndAnnotateIndistProteins(bool addSingletons=true) | IDBoostGraph |
calculateAndAnnotateIndistProteins_(const Graph &fg, bool addSingletons) | IDBoostGraph | private
ccs_ | IDBoostGraph | private
clusterIndistProteinsAndPeptides() | IDBoostGraph |
clusterIndistProteinsAndPeptidesAndExtendGraph() | IDBoostGraph |
computeConnectedComponents() | IDBoostGraph |
edge_t typedef | IDBoostGraph |
g | IDBoostGraph | private
getComponent(Size cc) | IDBoostGraph |
getDownstreamNodes(vertex_t start, Graph graph, std::vector< NodeType > &result) | IDBoostGraph | inline private
getNrConnectedComponents() | IDBoostGraph |
getProteinIDs() | IDBoostGraph |
getUpstreamNodes(vertex_t start, Graph graph, std::vector< NodeType > &result) | IDBoostGraph | inline private
getUpstreamNodesNonRecursive(std::queue< vertex_t > &q, Graph graph, int lvl, bool stop_at_first, std::vector< vertex_t > &result) | IDBoostGraph | private
Graph typedef | IDBoostGraph |
GraphConst typedef | IDBoostGraph |
Graphs typedef | IDBoostGraph |
IDBoostGraph(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, bool use_run_info, const boost::optional< const ExperimentalDesign > &ed=boost::optional< const ExperimentalDesign >()) | IDBoostGraph |
IDBoostGraph(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_run_info, bool use_unassigned_ids, const boost::optional< const ExperimentalDesign > &ed=boost::optional< const ExperimentalDesign >()) | IDBoostGraph |
IDPointer typedef | IDBoostGraph |
IDPointerConst typedef | IDBoostGraph |
nrPrefractionationGroups_ | IDBoostGraph | private
pepHitVtx_to_run_ | IDBoostGraph | private
PeptideNodeSet typedef | IDBoostGraph |
printGraph(std::ostream &out, const Graph &fg) | IDBoostGraph | static
ProteinNodeSet typedef | IDBoostGraph |
protIDs_ | IDBoostGraph | private
resolveGraphPeptideCentric_(Graph &fg) | IDBoostGraph | private
vertex_t typedef | IDBoostGraph |