| OpenMS 2.5.0

Here is a list of all class members with links to the classes they belong to:

### - f -

- f : Base64::Reinterpreter32_ , Base64::Reinterpreter64_ , IsotopeWavelet::fi_
- f_ : FASTAContainer< TFI_File >
- f_cf_ids_ : MzQuantMLHandler
- f_f_obj_ : MzQuantMLHandler
- F_HULL : LayerData
- F_HULLS : LayerData
- f_max_ : PrecursorIonSelectionPreprocessing
- f_observed_Mass : LCElutionPeak
- F_UNASSIGNED : LayerData
- FA : IonSource
- FAB : IonSource
- factor_ : ParentPeakMower , SpectrumCheapDPCorr
- Factory() : Factory< FactoryProduct >
- FactoryType : Factory< FactoryProduct >
- FailedAPICall() : FailedAPICall
- false_discovery_rate : MzTabMetaData
- FalseDiscoveryRate() : FalseDiscoveryRate
- fapex_intensity : LCElutionPeak
- far_ : Spectrum3DOpenGLCanvas
- FARADAYCUP : IonDetector
- FASTA : FileTypes
- fasta_entry : ProteinResolver::ProteinEntry
- FASTAContainer() : FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector >
- FASTAEntry() : FASTAFile::FASTAEntry
- FASTAFile() : FASTAFile
- fatal_streams_ : LogConfigHandler
- fatalError() : XMLHandler , XMLValidator
- fCentroidPeaks : CentroidData
- fCharge : LCElutionPeak
- FD : IonSource
- fDeconvPeaks : Deisotoper
- fdr_xprophet_() : XFDRAlgorithm
- FEASIBLE : LPWrapper
- feat_finder_ : FeatureFinderIdentificationAlgorithm
- feat_score_ : FeatureHypothesis
- feature : AbsoluteQuantitationStandards::featureConcentration
- Feature() : Feature
- feature() : KDTreeFeatureMaps , PSLPFormulation::IndexTriple
- feature0_charge_ : ChargePair
- feature0_index_ : ChargePair
- feature1_charge_ : ChargePair
- feature1_index_ : ChargePair
- feature_ : FeatureEditDialog , FeatureOpenMS , GridFeature
- feature_compare_ : FeatureFinderIdentificationAlgorithm
- feature_distance_ : FeatureGroupingAlgorithmKD , QTClusterFinder
- feature_filter_peptides_ : FeatureFinderIdentificationAlgorithm
- feature_filter_quality_ : FeatureFinderIdentificationAlgorithm
- FEATURE_GROUPING : DataProcessing
- feature_id : CsiFingerIdMzTabWriter::CsiAdapterIdentification
- feature_ID : SHFeature
- feature_id : SiriusMzTabWriter::SiriusAdapterIdentification
- FEATURE_ID_MULTIPLE_DIVERGENT : BaseFeature
- FEATURE_ID_MULTIPLE_SAME : BaseFeature
- FEATURE_ID_NONE : BaseFeature
- FEATURE_ID_SINGLE : BaseFeature
- feature_index_ : GridFeature
- feature_list : LCMS
- feature_map_ : FeatureFinderMultiplexAlgorithm , MRMFeature
- feature_maps_ : MSQuantifications::Assay , MSQuantifications , MSSim
- feature_match_status : SHFeature
- feature_max : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- feature_min : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- feature_mz : SIPPeptide
- feature_name_ : AbsoluteQuantitationMethod
- feature_only_ : SiriusAdapterAlgorithm
- feature_rt : SIPPeptide
- feature_type : SIPPeptide
- FeatureDeconvolution() : FeatureDeconvolution
- FeatureDistance() : FeatureDistance
- FeatureEditDialog() : FeatureEditDialog
- featureExtraInformation : SHFeature
- FeatureFileOptions() : FeatureFileOptions
- FeatureFinder() : FeatureFinder
- FeatureFinderAlgorithm() : FeatureFinderAlgorithm
- FeatureFinderAlgorithmIsotopeWavelet() : FeatureFinderAlgorithmIsotopeWavelet
- FeatureFinderAlgorithmMRM() : FeatureFinderAlgorithmMRM
- FeatureFinderAlgorithmPicked() : FeatureFinderAlgorithmPicked
- FeatureFinderAlgorithmSH() : FeatureFinderAlgorithmSH
- FeatureFinderAlgorithmSHCtrl() : FeatureFinderAlgorithmSHCtrl , SuperHirnParameters
- FeatureFinderIdentificationAlgorithm() : FeatureFinderIdentificationAlgorithm
- FeatureFinderMultiplexAlgorithm() : FeatureFinderMultiplexAlgorithm
- FeatureFindingMetabo() : FeatureFindingMetabo
- FeatureGroupingAlgorithm() : FeatureGroupingAlgorithm
- FeatureGroupingAlgorithmKD() : FeatureGroupingAlgorithmKD
- FeatureGroupingAlgorithmLabeled() : FeatureGroupingAlgorithmLabeled
- FeatureGroupingAlgorithmQT() : FeatureGroupingAlgorithmQT
- FeatureGroupingAlgorithmUnlabeled() : FeatureGroupingAlgorithmUnlabeled
- FeatureHandle() : FeatureHandle
- FeatureHandleMutable_() : FeatureHandle::FeatureHandleMutable_
- FeatureHypothesis() : FeatureHypothesis
- FeatureIterator_ : LayerStatisticsDialog
- FeatureKDTree : KDTreeFeatureMaps
- FeatureLCProfile() : FeatureLCProfile
- FeatureListType : MRMFeature
- FeatureMap() : FeatureMap
- FeatureMapSharedPtrType : LayerData , SpectrumCanvas , TOPPViewBase , TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
- FeatureMapToAttachment() : MRMFeatureFilter
- FeatureMapType : FeatureDeconvolution , LayerData , MetaboliteFeatureDeconvolution , SpectrumCanvas , SpectrumWidget , TOPPViewBase , TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
- FeatureOpenMS() : FeatureOpenMS
- features : LayerData , MSstatsFile::AggregatedConsensusInfo
- features_ : FeatureFinderAlgorithm , KDTreeFeatureMaps , MRMFeature , MRMFeatureFilter , MRMFeatureOpenMS
- FeatureType : FeatureDeconvolution , FeatureMap , MetaboliteFeatureDeconvolution , SpectrumCanvas , MRMScoring
- FeatureType_ : ILPDCWrapper
- FEATUREXML : FileTypes
- FeatureXMLFile() : FeatureXMLFile , IdXMLFile
- fEndTR : LCElutionPeak
- fetchSpectrumSwath() : OpenSwathScoring
- ff_ : FeatureFinderAlgorithm
- FI : IonSource
- FIAMSDataProcessor() : FIAMSDataProcessor
- FIAMSScheduler() : FIAMSScheduler
- FIB : IonSource
- fid : SiriusMSFile::CompoundInfo
- FidHandler() : FidHandler
- field : DataFilters::DataFilter
- field_changed_() : DataFilterDialog
- FII : IonSource
- FILE : StreamHandler
- file_ : Bzip2Ifstream , BaseException , GlobalExceptionHandler , HDF5Connector , XMLHandler
- file_current_index_ : Bzip2InputStream , GzipInputStream
- file_name_ : ListEditorDelegate , TOPPASResource , TOPPASScene
- file_origin_to_idx_ : IDMergerAlgorithm
- file_path_ : DocumentIdentifier , DocumentIdentifierVisualizer
- file_size_ : SourceFile , SourceFileVisualizer
- file_stream_ : CSVWriter
- file_type_ : DocumentIdentifier , DocumentIdentifierVisualizer , SourceFile , SourceFileVisualizer
- fileChanged() : FileWatcher
- fileChanged_() : TOPPViewBase
- FileEmpty() : FileEmpty
- fileList() : File
- filename : ConsensusMap::ColumnHeader , LayerData
- filename_ : CachedmzML , FIAMSScheduler , INIFileEditorWindow , IndexedMzMLHandler , MzMLSqliteHandler , MzMLSqliteSwathHandler
- fileName_ : ParamEditorDelegate
- filename_ : MSDataSqlConsumer , OnDiscMSExperiment , ToolsDialog , TOPPASToolConfigDialog , XMLValidator
- filename_cached_ : CachedmzML
- filenames : TOPPASVertex::VertexRoundPackage
- filenames_ : File::TemporaryFiles_ , TOPPASVertex::TOPPASFilenames
- fileNamesValid() : TOPPASInputFileListVertex
- FileNameTooLong() : FileNameTooLong
- fileNameValid() : TOPPASInputFileDialog
- FileNotFound() : FileNotFound
- FileNotReadable() : FileNotReadable
- FileNotWritable() : FileNotWritable
- fileOpen() : QApplicationTOPP
- fileParamValidityCheck_() : TOPPBase
- files_total_ : TOPPASOutputFileListVertex
- files_written_ : TOPPASOutputFileListVertex
- filestream_ : IndexedMzMLHandler
- FileWatcher() : FileWatcher
- fill_data_ : PeakFileOptions
- fillCalibrants() : InternalCalibration
- fillChromatogramData_() : MzMLHandler
- fillComboBox_() : BaseVisualizerGUI
- fillComboBoxes_() : TOPPASIOMappingDialog
- fillData_() : MzDataHandler
- fillDensities() : PosteriorErrorProbabilityModel
- filled_ : IDMergerAlgorithm
- fillExtendedResidueTable_() : IntegerMassDecomposer< ValueType, DecompositionValueType >
- fillFromInputLine() : FuzzyStringComparator::StreamElement_
- fillGaps_() : CoarseIsotopePatternGenerator
- fillIDs_() : InternalCalibration
- fillIndistinguishableGroupsWithSingletons() : ProteinIdentification
- fillInputVector_() : IsobaricIsotopeCorrector
- fillIntensities() : BaseModel< D >
- fillIntensity() : BaseModel< D >
- fillLabelMasterList_() : MultiplexDeltaMassesGenerator
- fillLeft() : String , StringUtils
- fillLogDensities() : PosteriorErrorProbabilityModel
- fillLogDensitiesGumbel() : PosteriorErrorProbabilityModel
- fillRight() : String , StringUtils
- fillVectorsOfMessagePassers() : MessagePasserFactory< Label >
- filter() : GaussFilter , GaussFilterAlgorithm , MorphologicalFilter , MultiplexFilteringCentroided , MultiplexFilteringProfile , SavitzkyGolayFilter
- filter_ : DataFilterDialog
- filter_by_num_masstraces_ : SiriusAdapterAlgorithm
- filter_dock_widget_ : TOPPViewBase
- filter_passed : PeptideIndexing::FoundProteinFunctor
- filter_rejected : PeptideIndexing::FoundProteinFunctor
- filter_threshold_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
- filterAveragineModel_() : MultiplexFiltering , MultiplexFilteringProfile
- filterByMissedCleavages() : EnzymaticDigestion
- filterByPeakWidth() : ElutionPeakDetection
- filterCCs_() : MapAlignmentAlgorithmKD
- filterContextMenu() : TOPPViewBase
- filterDecomps_() : CompNovoIdentificationBase
- filterDeisotopicMSPeak() : ProcessData
- filterDetectability() : DetectabilitySimulation
- filterEdit() : TOPPViewBase
- filterExperiment() : GaussFilter , MorphologicalFilter , SavitzkyGolayFilter
- FilterFeatureMap() : MRMFeatureFilter
- filterFeatures_() : FeatureFinderIdentificationAlgorithm
- filterFeaturesFinalizeAssay_() : FeatureFinderIdentificationAlgorithm
- FilterFunctor() : FilterFunctor
- filterHits_() : MetaDataBrowser
- filterHitsByRank() : IDFilter
- filterHitsByScore() : IDFilter
- FILTERING : DataProcessing
- FilterOperation : DataFilters
- filterPeakMap() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
- filterPeakPositions_() : MultiplexFiltering
- filterPeakSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
- filterPeakSpectrumForTopNInJumpingWindow() : WindowMower
- filterPeakSpectrumForTopNInSlidingWindow() : WindowMower
- filterPeptideCorrelation_() : MultiplexFiltering , MultiplexFilteringProfile
- filterPeptideEvidences() : IDFilter::DigestionFilter , IDFilter
- FilterPeptideEvidences() : IDFilter
- filterPeptideIds_() : PrecursorIonSelection
- filterPeptidesByCharge() : IDFilter
- filterPeptidesByLength() : IDFilter
- filterPeptidesByMZ() : IDFilter
- filterPeptidesByMZError() : IDFilter
- filterPeptidesByRT() : IDFilter
- filterPeptidesByRTPredictPValue() : IDFilter
- filterPeptideSequences() : IDFilter::PeptideDigestionFilter
- filterPermuts_() : CompNovoIdentificationBase
- filterPrecursorsByTags() : OPXLHelper
- filterProtIds_() : PrecursorIonSelection
- filterQueryMatchesByScore() : IDFilter
- filterRange() : MorphologicalFilter
- filters : LayerData
- filters_ : DataFilters , TOPPViewBase
- filters_check_box_ : TOPPViewBase
- filterSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower
- filterTaxonomyIdentifier_() : PrecursorIonSelectionPreprocessing
- FilterType : DataFilters
- final_MS_ : MassAnalyzerVisualizer
- final_MS_exponent_ : MassAnalyzer
- finalizeCluster() : QTCluster
- finalized_ : QTCluster
- find() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , File
- find_AC() : MS2Info
- find_closest_mz_match() : ProcessData
- find_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_feature_by_ID() : LCMS
- find_LC_MS_by_ID() : LCMS
- find_match_by_id() : SHFeature
- find_Modification() : MS2Info
- find_nearest() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_nearest_if() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- find_retention_time() : ProcessData
- find_true_peak() : LCElutionPeak
- find_within_range() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- findBestIsotopeFit_() : FeatureFinderAlgorithmPicked
- findByIndex() : SpectrumLookup
- findByNativeID() : SpectrumLookup
- findByReference() : SpectrumLookup
- findByRegExpMatch_() : SpectrumLookup
- findByRT() : SpectrumLookup
- findByScanNumber() : SpectrumLookup
- findClosestPeak_() : PeakPickerMRM
- findCommonMetaKeys() : MetaInfoInterfaceUtils
- findComponentFeature_() : AbsoluteQuantitationStandards
- findConnectedComponent() : PeptideProteinResolution
- findDatabase() : File
- findDecoyString() : DecoyHelper
- findDoc() : File
- findEntry() : Param::ParamNode
- findEntry_() : TOPPBase
- findEntryRecursive() : Param::ParamNode
- finder_ : AhoCorasickAmbiguous
- findExecutable() : File
- findFeaturesToMerge() : MS1FeatureMerger
- findFirst() : Param
- findFixedAndTermResidues_() : MRMDecoy
- findFixedResidues() : MRMDecoy
- findFixedResidues_() : MRMDecoy
- findHit() : ProteinIdentification
- findIndexListOffset() : IndexedMzMLDecoder
- findIsotope_() : FeatureFinderAlgorithmPicked
- findLargestPeak() : MRMTransitionGroupPicker
- findLocalExtrema() : ElutionPeakDetection
- findLocalFeatures_() : FeatureFindingMetabo
- findMatches() : ModificationDefinitionsSet
- findMatchingPeaks_() : TwoDOptimization
- findMaxByIntPeak() : MassTrace
- findMaxima() : PeakPickerMaxima
- findMinimalProteinList() : PSProteinInference
- findModificationIndex() : ModificationsDB
- findMS2Fragment() : MS2ConsensusSpectrum
- findMzKey() : BackgroundControl
- findNearest() : MSChromatogram , MSSpectrum , MZTrafoModel
- findNearestNeighbour_() : GridBasedClustering< Metric >
- findNearestPeak_() : Spectrum2DCanvas
- findNext() : AhoCorasickAmbiguous , Param
- findNode() : Param::ParamNode
- findParentOf() : Param::ParamNode
- findPeakAtPosition_() : Spectrum1DCanvas
- findPeptide() : TransitionHelper
- findPeptideEntry_() : ProteinResolver
- findPosAtPeakHeightPercent_() : PeakIntegrator
- findR() : RWrapper
- findReferenceChannel_() : IsobaricNormalizer
- findRelevantFilePaths_() : QuantitativeExperimentalDesign
- findScoreType() : IdentificationData
- findScript() : RWrapper
- findSearchParameters_() : MzIdentMLDOMHandler
- findSiblingTOPPExecutable() : File
- findStream_() : LogStream
- findTopUniqueHits_() : XFDRAlgorithm
- findTrKey() : BackgroundControl
- findWidestPeakIndices() : MRMTransitionGroupPicker
- findWinner_() : PeakIntensityPredictor
- FineIsotopePatternGenerator() : FineIsotopePatternGenerator
- finishAdding_() : BaseVisualizerGUI , Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- finishContextMenu_() : Spectrum2DCanvas
- finished_ : TOPPASVertex
- finishHoveringEdge() : TOPPASScene , TOPPASVertex
- finishTOPPToolExecution() : TOPPViewBase
- first : ProbablePhosphoSites , TransformationModel::DataPoint
- first_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , SignalToNoiseEstimator< Container >
- first_column_ : FuzzyStringComparator
- first_name_ : ContactPerson
- FIRST_STABILITY_REGION : Instrument
- firstExec() : TOPPASIOMappingDialog
- firstname_ : ContactPersonVisualizer
- firstToUpper() : String , StringUtils
- fIsotopMass : LCElutionPeak
- fit() : EGHTraceFitter , GaussTraceFitter , GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , PosteriorErrorProbabilityModel , TraceFitter
- fit1d() : BiGaussFitter1D , EGHFitter1D , EmgFitter1D , ExtendedIsotopeFitter1D , Fitter1D , GaussFitter1D , IsotopeFitter1D
- fit_data_ : MapAlignmentAlgorithmKD
- fit_EMG_ : PeakIntegrator
- fitCalibration() : AbsoluteQuantitation
- fitElutionModels() : ElutionModelFitter
- fitEMGPeakModel() : EmgGradientDescent
- fitGumbelGauss() : PosteriorErrorProbabilityModel
- fitLOWESS() : MapAlignmentAlgorithmKD
- fitModel() : TransformationDescription
- fitOffset_() : MaxLikeliFitter1D
- fitPeakShape_() : PeakPickerCWT
- fitRT_() : EmgScoring , FeatureFinderAlgorithmMRM
- fittedIntensity_ : CentroidPeak
- Fitter1D() : Fitter1D
- fitter_emg1D_ : EmgScoring
- fitWeighted() : GumbelDistributionFitter , GumbelMaxLikelihoodFitter
- FIVE_PRIME : Ribonucleotide
- five_prime_ : NASequence
- five_prime_gain_ : DigestionEnzymeRNA , RNaseDigestion
- FivePrime : NASequence
- FIXED : LPWrapper
- fixed_mod : MzIdentMLDOMHandler::ModificationParam , MzTabMetaData
- fixed_modification_ : ModificationDefinition
- fixed_modifications : ProteinIdentification::SearchParameters
- fixed_modifications_ : PepXMLFile , PepXMLFileMascot , PrecursorIonSelectionPreprocessing
- fixed_mods : DBSearchParam
- fixed_mods_ : ModificationDefinitionsSet , PrecursorIonSelectionPreprocessing
- fixedModNames_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- fixRange() : Spectrum1DGoToDialog , Spectrum2DGoToDialog
- Flag : FeatureFinderDefs
- flag : MapAlignmentAlgorithmSpectrumAlignment::Compare
- FLAG : ParameterInformation
- flag : QcMLFile::QualityParameter
- flag_or_filter_ : MRMFeatureFilter
- flags : LayerData
- Flags : LayerData
- flags_ : Annotation1DTextItem , FeatureFinder
- flipLayer() : Spectrum1DCanvas
- flipped : LayerData
- flipped_y_axis_ : Spectrum1DWidget
- flippedLayersExist() : Spectrum1DCanvas
- FLOAT : ListEditor
- float_data_arrays_ : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
- FloatDataArray : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
- FloatDataArrays : FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
- FLOATINDICES : PeakPickerMRM
- floats_32 : MzMLHandlerHelper::BinaryData
- floats_64 : MzMLHandlerHelper::BinaryData
- FLOWINJECTIONANALYSIS : IonSource
- flush() : IChromatogramsWriter , ISpectraWriter , LogStream , MSDataSqlConsumer
- flush_after_ : MSDataSqlConsumer
- flux_ : HPLC
- fMinPeakGroupSize : Deisotoper
- fMonoMass : LCElutionPeak
- fmz : SiriusMSFile::CompoundInfo
- fNoise : CentroidData
- fNrIsotopes : LCElutionPeak
- FOCALPLANEARRAY : IonDetector
- FOCALPLANECOLLECTOR : IonDetector
- focusByTab() : TOPPASBase
- focusInEvent() : OpenMSLineEdit
- focusOutEvent() : OpenMSLineEdit , Spectrum3DOpenGLCanvas , SpectrumCanvas
- followRedirect() : MascotRemoteQuery
- followUpScan : IsobaricChannelExtractor::PuritySate_
- followUpValid() : IsobaricChannelExtractor::PuritySate_
- force_constraints_ : FeatureDistance
- force_default_mods_ : XTandemInfile
- force_invalid_mods_ : TransitionTSVFile
- force_maxquant_compatibility_ : PeakFileOptions
- force_tpp_compatibility_ : PeakFileOptions
- form_version_ : MascotInfile
- format : MzTabMSRunMetaData
- format_ : SaveImageDialog
- FORMAT_CONVERSION : DataProcessing
- FORMAT_GLPK : LPWrapper
- FORMAT_LP : LPWrapper
- FORMAT_MPS : LPWrapper
- formula : AccurateMassSearchEngine::MappingEntry_ , IdentifiedCompound , SiriusMSFile::CompoundInfo , SiriusMzTabWriter::SiriusAdapterHit
- formula_ : Adduct , EmpiricalFormula , Residue , ResidueModification , Ribonucleotide
- forward_ : HiddenMarkovModel
- forwardDump() : HiddenMarkovModel
- forwardTOPPOutput() : TOPPASToolVertex
- found_adduct_ : AccurateMassSearchResult
- found_precursor_charge_ : SpectralMatch
- found_precursor_mass_ : SpectralMatch
- FoundProteinFunctor() : PeptideIndexing::FoundProteinFunctor
- FOURIERTRANSFORM : MassAnalyzer
- FOURPLEX : ItraqConstants
- fpeak_area : LCElutionPeak
- fPeakGroupStart : CentroidData
- fraction : ExperimentalDesign::MSFileSectionEntry
- fraction_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
- fraction_counter_ : PrecursorIonSelection
- fraction_group : ExperimentalDesign::MSFileSectionEntry
- fraction_identifier_ : ExperimentalSettings , ExperimentalSettingsVisualizer
- frag_annotations : OPXLDataStructs::CrossLinkSpectrumMatch
- frag_charge_ : MSstatsFile::MSstatsLine_
- fragment_annotations : SimpleSearchEngineAlgorithm::AnnotatedHit_
- fragment_annotations_ : PeptideHit
- fragment_charge : TransitionTSVFile::TSVTransition , LightTransition
- fragment_ion_ : MSstatsFile::MSstatsLine_
- fragment_ion_codes_ : NucleicAcidSearchEngine
- fragment_lower_mz_ : XTandemInfile
- fragment_mass_error_unit_ : XTandemInfile
- fragment_mass_tolerance : DBSearchParam , ProteinIdentification::SearchParameters
- fragment_mass_tolerance_ : AScore , CompNovoIdentificationBase , CompNovoIonScoringBase , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SimpleSearchEngineAlgorithm , XTandemInfile
- fragment_mass_tolerance_ppm : ProteinIdentification::SearchParameters
- fragment_mass_tolerance_unit_ : SimpleSearchEngineAlgorithm
- fragment_mass_tolerance_unit_ppm_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- fragment_mass_tolerance_xlinks_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- fragment_mass_type_ : XTandemInfile
- fragment_modification : TransitionTSVFile::TSVTransition
- fragment_mz_error_ : MetaboliteSpectralMatching
- fragment_mzdelta : TransitionTSVFile::TSVTransition
- fragment_nr : TransitionTSVFile::TSVTransition
- fragment_tolerance : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- fragment_tolerance_ppm : DBSearchParam
- fragment_tolerance_ppm_ : AScore
- fragment_type : TransitionTSVFile::TSVTransition
- fragment_window_ : SpectraIdentificationViewWidget
- FragmentAnnotationDetail_() : RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
- fragmentAnnotationDetailsToPHFA() : RNPxlFragmentAnnotationHelper
- fragmentation_method : MzTabMSRunMetaData
- FragmentationType : ProtonDistributionModel
- fragmenterror_statistics_ : SpectrumAnnotator
- FragmentMassError() : FragmentMassError
- fragmentMZ : MS2Fragment
- FragmentSeqMap : MRMAssay
- frame_size_ : SavitzkyGolayFilter
- freq_ : IonDetectorVisualizer
- FRINGING_FIELD : Instrument
- from_ : TOPPASEdge
- from_max_to_left_ : IsotopeWaveletTransform< PeakType >
- from_max_to_right_ : IsotopeWaveletTransform< PeakType >
- fromCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabNullAbleInterface , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
- fromConsensusMap() : ExperimentalDesign
- fromFeatureMap() : ExperimentalDesign
- fromIdentifications() : ExperimentalDesign
- fromLocalFile() : TOPPASResource
- fromNative_() : StringManager
- fromQStringList() : StringListUtils
- fromString() : AASequence , DataFilters::DataFilter , MultiGradient , NASequence
- front() : ConstRefVector< ContainerT >
- front_boxes_ : IsotopeWaveletTransform< PeakType >
- fRT : LCElutionPeak
- fScanNumber : Deisotoper
- fScanNumberApex : LCElutionPeak
- fScanNumberEnd : LCElutionPeak
- fScanNumberStart : LCElutionPeak
- fScanRetentionTime : CentroidData
- fShortReportFlag : Deisotoper
- fSignalToNoise : LCElutionPeak
- fSNIntensityThreshold : LCElutionPeak
- fStartTR : LCElutionPeak
- fTheta : Deisotoper
- FTPeakDetectController() : FTPeakDetectController
- fulfilled_ : SemanticValidator
- Full : NASequence , Residue
- full_id_ : ResidueModification
- full_meta_ : MSDataSqlConsumer
- full_name : MzTabCVMetaData
- full_name_ : ResidueModification
- FULL_SQ : MS2Info
- fullDimensionName() : Peak2D
- fullDimensionNameMZ() : Peak2D
- fullDimensionNameRT() : Peak2D
- fullDimensionUnit() : Peak2D
- fullDimensionUnitMZ() : Peak2D
- fullDimensionUnitRT() : Peak2D
- fullname : CV
- FullPeptideName : TransitionTSVFile::TSVTransition
- FullSwathFileConsumer() : FullSwathFileConsumer
- function_ : BaseException , GlobalExceptionHandler
- FunctionType : Factory< FactoryProduct >
- Functor() : GumbelMaxLikelihoodFitter::Functor< _Scalar, NX, NY >
- FuzzyACPattern : AhoCorasickAmbiguous
- FuzzyStringComparator() : FuzzyStringComparator
- fVolume : LCElutionPeak
- FWHM : MassAnalyzer
- fwhm_ : MassTrace
- fwhm_bound_ : PeakPickerCWT
- fwhm_end_idx_ : MassTrace
- fwhm_mz_avg : MassTrace
- fwhm_start_idx_ : MassTrace
- fwhm_threshold_ : TargetedSpectraExtractor
- fwhm_weight_ : TargetedSpectraExtractor
- fWindowWidth : CentroidData