| OpenMS 2.5.0

Transitions.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
38 #include <string>
39 #include <vector>
40 #include <OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>
41
42 namespace OpenSwath
43 {
44
45 struct OPENSWATHALGO_DLLAPI Peptide
46 {
47 double rt;
48 int charge;
49 std::string sequence;
50 std::string id;
51 int getChargeState() const
52 {
53 return charge;
54 }
55
56 std::vector<LightModification> modifications;
57 std::vector<LightTransition> transitions;
58 };
59
60 struct OPENSWATHALGO_DLLAPI Protein
61 {
62 std::string id;
63 std::string sequence;
64 std::vector<Peptide> peptides;
65 };
66
67 struct OPENSWATHALGO_DLLAPI TargetedExperiment
68 {
69 std::vector<Protein> proteins;
70 };
71
72 }
73
OpenSwath::Peptide::getChargeState
int getChargeState() const
Definition: Transitions.h:51
OpenSwath::Peptide::rt
double rt
Definition: Transitions.h:47
OpenSwath::Protein::id
std::string id
Definition: Transitions.h:62
OpenSwath
Definition: MRMScoring.h:49
OpenSwath::Protein::peptides
std::vector< Peptide > peptides
Definition: Transitions.h:64
OpenSwath::Peptide::modifications
std::vector< LightModification > modifications
Definition: Transitions.h:56
OpenSwath::Peptide::sequence
std::string sequence
Definition: Transitions.h:49
OpenSwath::Protein
Definition: Transitions.h:60
OpenSwath::TargetedExperiment
Definition: Transitions.h:67
OpenSwath::Peptide::transitions
std::vector< LightTransition > transitions
Definition: Transitions.h:57
OpenSwath::Peptide::charge
int charge
Definition: Transitions.h:48
OpenSwath::Peptide
Definition: Transitions.h:45
OpenSwath::TargetedExperiment::proteins
std::vector< Protein > proteins
Definition: Transitions.h:69
TransitionExperiment.h
OpenSwath::Protein::sequence
std::string sequence
Definition: Transitions.h:63
OpenSwath::Peptide::id
std::string id
Definition: Transitions.h:50