| OpenMS 2.5.0

SequestOutfile Member List

This is the complete list of members for SequestOutfile, including all inherited members.

const_weights_ | SequestOutfile | private static
delta_cn_weights_ | SequestOutfile | private static
delta_mass_weights_ | SequestOutfile | private static
getACAndACType(String line, String &accession, String &accession_type) | SequestOutfile |
getColumns(const String &line, std::vector< String > &substrings, Size number_of_columns, Size reference_column) | SequestOutfile |
getSequences(const String &database_filename, const std::map< String, Size > &ac_position_map, std::vector< String > &sequences, std::vector< std::pair< String, Size > > &found, std::map< String, Size > &not_found) | SequestOutfile |
load(const String &result_filename, std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &protein_identification, const double p_value_threshold, std::vector< double > &pvalues, const String &database="", const bool ignore_proteins_per_peptide=false) | SequestOutfile |
max_pep_lens_ | SequestOutfile | private static
num_frags_ | SequestOutfile | private static
operator=(const SequestOutfile &sequest_outfile) | SequestOutfile |
operator==(const SequestOutfile &sequest_outfile) const | SequestOutfile |
rank_sp_weights_ | SequestOutfile | private static
readOutHeader(const String &result_filename, DateTime &datetime, double &precursor_mz_value, Int &charge, Size &precursor_mass_type, Size &ion_mass_type, Size &displayed_peptides, String &sequest, String &sequest_version, String &database_type, Int &number_column, Int &rank_sp_column, Int &id_column, Int &mh_column, Int &delta_cn_column, Int &xcorr_column, Int &sp_column, Int &sf_column, Int &ions_column, Int &reference_column, Int &peptide_column, Int &score_column, Size &number_of_columns) | SequestOutfile |
SequestOutfile() | SequestOutfile |
SequestOutfile(const SequestOutfile &sequest_outfile) | SequestOutfile |
xcorr_weights_ | SequestOutfile | private static
~SequestOutfile() | SequestOutfile | virtual