| OpenMS 2.5.0

MetaProSIPReporting Member List

This is the complete list of members for MetaProSIPReporting, including all inherited members.

createBinnedPeptideRIAData_(const Size n_heatmap_bins, const vector< vector< SIPPeptide > > &sip_clusters, vector< vector< double > > &binned_peptide_ria, vector< String > &cluster_labels) | MetaProSIPReporting | inline protected static
createCSVReport(vector< vector< SIPPeptide > > &sippeptide_cluster, ofstream &os, map< String, String > &proteinid_to_description) | MetaProSIPReporting | inline static
createPeptideCentricCSVReport(const String &in_mzML, const String &file_extension, vector< vector< SIPPeptide > > &sippeptide_cluster, ofstream &os, map< String, String > &proteinid_to_description, String qc_output_directory, String file_suffix, bool report_natural_peptides) | MetaProSIPReporting | inline static
createQualityReport(const String &tmp_path, const String &qc_output_directory, const String &file_suffix, const String &file_extension, const vector< vector< SIPPeptide > > &sip_peptide_cluster, Size n_heatmap_bins, double score_plot_y_axis_min, bool report_natural_peptides, const QString &executable=QString("R")) | MetaProSIPReporting | inline static
plotFilteredSpectra(const String &output_dir, const String &tmp_path, const String &file_suffix, const String &file_extension, const vector< SIPPeptide > &sip_peptides, Size debug_level=0, const QString &executable=QString("R")) | MetaProSIPReporting | inline static
plotHeatMap(const String &output_dir, const String &tmp_path, const String &file_suffix, const String &file_extension, const vector< vector< double > > &binned_ria, vector< String > class_labels, Size debug_level=0, const QString &executable=QString("R")) | MetaProSIPReporting | inline static
plotScoresAndWeights(const String &output_dir, const String &tmp_path, const String &file_suffix, const String &file_extension, const vector< SIPPeptide > &sip_peptides, double score_plot_yaxis_min, Size debug_level=0, const QString &executable=QString("R")) | MetaProSIPReporting | inline static
writeHTML(const String &qc_output_directory, const String &file_suffix, const String &file_extension, const vector< SIPPeptide > &sip_peptides) | MetaProSIPReporting | inline static