OpenMS: Member List

| OpenMS 2.5.0

BasicProteinInferenceAlgorithm Member List

This is the complete list of members for BasicProteinInferenceAlgorithm, including all inherited members.

AggregationMethod enum name | BasicProteinInferenceAlgorithm |
BasicProteinInferenceAlgorithm() | BasicProteinInferenceAlgorithm |
check_defaults_ | DefaultParamHandler | protected
CMD enum value | ProgressLogger |
current_logger_ | ProgressLogger | mutableprotected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
last_invoke_ | ProgressLogger | mutableprotected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
processRun_(std::unordered_map< std::string, std::pair< ProteinHit *, Size >> &acc_to_protein_hitP_and_count, std::unordered_map< std::string, std::map< Int, PeptideHit *>> &best_pep, ProteinIdentification &prot_run, std::vector< PeptideIdentification > &pep_ids, Size min_peptides_per_protein) const | BasicProteinInferenceAlgorithm | private
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protectedstatic
run(std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids) const | BasicProteinInferenceAlgorithm |
run(std::vector< PeptideIdentification > &pep_ids, ProteinIdentification &prot_id) const | BasicProteinInferenceAlgorithm |
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutableprotected
updateMembers_() | DefaultParamHandler | protectedvirtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProgressLogger() | ProgressLogger |