| OpenMS 2.5.0

IdentificationData Member List

This is the complete list of members for IdentificationData, including all inherited members.

AddressLookup typedef | IdentificationData |
addScore(QueryMatchRef match_ref, ScoreTypeRef score_ref, double value) | IdentificationData |
AppliedProcessingStep typedef | IdentificationData |
AppliedProcessingSteps typedef | IdentificationData |
calculateCoverages(bool check_molecule_length=false) | IdentificationData |
checkAppliedProcessingSteps_(const AppliedProcessingSteps &steps_and_scores) const | IdentificationData | protected
checkParentMatches_(const ParentMatches &matches, MoleculeType expected_type) const | IdentificationData | protected
checkScoreTypes_(const std::map< ScoreTypeRef, double > &scores) const | IdentificationData | protected
cleanup(bool require_query_match=true, bool require_identified_sequence=true, bool require_parent_match=true, bool require_parent_group=false, bool require_match_group=false) | IdentificationData |
clearCurrentProcessingStep() | IdentificationData |
clearMetaInfo() | MetaInfoInterface |
createIfNotExists_() | MetaInfoInterface | inline protected
current_step_ref_ | IdentificationData | protected
data_queries_ | IdentificationData | protected
data_query_lookup_ | IdentificationData | protected
DataProcessingSoftware typedef | IdentificationData |
DataProcessingSoftwares typedef | IdentificationData |
DataProcessingStep typedef | IdentificationData |
DataProcessingSteps typedef | IdentificationData |
DataQueries typedef | IdentificationData |
DataQuery typedef | IdentificationData |
DataQueryRef typedef | IdentificationData |
db_search_params_ | IdentificationData | protected
db_search_steps_ | IdentificationData | protected
DBSearchParam typedef | IdentificationData |
DBSearchParams typedef | IdentificationData |
DBSearchSteps typedef | IdentificationData |
findScoreType(const String &score_name) const | IdentificationData |
getBestMatchPerQuery(ScoreTypeRef score_ref) const | IdentificationData |
getCurrentProcessingStep() | IdentificationData |
getDataProcessingSoftwares() const | IdentificationData | inline
getDataProcessingSteps() const | IdentificationData | inline
getDataQueries() const | IdentificationData | inline
getDBSearchParams() const | IdentificationData | inline
getDBSearchSteps() const | IdentificationData | inline
getIdentifiedCompounds() const | IdentificationData | inline
getIdentifiedOligos() const | IdentificationData | inline
getIdentifiedPeptides() const | IdentificationData | inline
getInputFiles() const | IdentificationData | inline
getKeys(std::vector< String > &keys) const | MetaInfoInterface |
getKeys(std::vector< UInt > &keys) const | MetaInfoInterface |
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMoleculeQueryMatches() const | IdentificationData | inline
getParentMoleculeGroupings() const | IdentificationData | inline
getParentMolecules() const | IdentificationData | inline
getQueryMatchGroups() const | IdentificationData | inline
getScoreTypes() const | IdentificationData | inline
IdentificationData() | IdentificationData | inline
IdentificationData(const IdentificationData &other)=delete | IdentificationData |
IdentificationData(IdentificationData &&other) | IdentificationData | inline
identified_compound_lookup_ | IdentificationData | protected
identified_compounds_ | IdentificationData | protected
identified_oligo_lookup_ | IdentificationData | protected
identified_oligos_ | IdentificationData | protected
identified_peptide_lookup_ | IdentificationData | protected
identified_peptides_ | IdentificationData | protected
IdentifiedCompound typedef | IdentificationData |
IdentifiedCompoundRef typedef | IdentificationData |
IdentifiedCompounds typedef | IdentificationData |
IdentifiedMoleculeRef typedef | IdentificationData |
IdentifiedOligo typedef | IdentificationData |
IdentifiedOligoRef typedef | IdentificationData |
IdentifiedOligos typedef | IdentificationData |
IdentifiedPeptide typedef | IdentificationData |
IdentifiedPeptideRef typedef | IdentificationData |
IdentifiedPeptides typedef | IdentificationData |
IDFilter class | IdentificationData | friend
input_files_ | IdentificationData | protected
InputFileRef typedef | IdentificationData |
InputFiles typedef | IdentificationData |
insertIntoMultiIndex_(ContainerType &container, const ElementType &element) | IdentificationData | inline protected
insertIntoMultiIndex_(ContainerType &container, const ElementType &element, AddressLookup &lookup) | IdentificationData | inline protected
isBetterScore(double first, double second, bool higher_better) | IdentificationData | inline static
isMetaEmpty() const | MetaInfoInterface |
isValidHashedReference_(RefType ref, const AddressLookup &lookup) | IdentificationData | inline protected static
isValidReference_(RefType ref, ContainerType &container) | IdentificationData | inline protected static
MassType typedef | IdentificationData |
MatchGroupRef typedef | IdentificationData |
meta_ | MetaInfoInterface | protected
MetaInfoInterface() | MetaInfoInterface |
MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface |
MetaInfoInterface(MetaInfoInterface &&) noexcept | MetaInfoInterface |
metaRegistry() | MetaInfoInterface | static
metaValueExists(const String &name) const | MetaInfoInterface |
metaValueExists(UInt index) const | MetaInfoInterface |
MoleculeParentMatch typedef | IdentificationData |
MoleculeQueryMatch typedef | IdentificationData |
MoleculeQueryMatches typedef | IdentificationData |
MoleculeType typedef | IdentificationData |
operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface |
operator=(const MetaInfoInterface &rhs) | MetaInfoInterface |
operator=(MetaInfoInterface &&) noexcept | MetaInfoInterface |
operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface |
parent_molecule_groupings_ | IdentificationData | protected
parent_molecule_lookup_ | IdentificationData | protected
parent_molecules_ | IdentificationData | protected
ParentGroupRef typedef | IdentificationData |
ParentMatches typedef | IdentificationData |
ParentMolecule typedef | IdentificationData |
ParentMoleculeGroup typedef | IdentificationData |
ParentMoleculeGrouping typedef | IdentificationData |
ParentMoleculeGroupings typedef | IdentificationData |
ParentMoleculeGroups typedef | IdentificationData |
ParentMoleculeRef typedef | IdentificationData |
ParentMolecules typedef | IdentificationData |
PeakAnnotations typedef | IdentificationData |
processing_softwares_ | IdentificationData | protected
processing_steps_ | IdentificationData | protected
ProcessingSoftwareRef typedef | IdentificationData |
ProcessingStepRef typedef | IdentificationData |
query_match_groups_ | IdentificationData | protected
query_match_lookup_ | IdentificationData | protected
query_matches_ | IdentificationData | protected
QueryMatchGroup typedef | IdentificationData |
QueryMatchGroups typedef | IdentificationData |
QueryMatchRef typedef | IdentificationData |
registerDataProcessingSoftware(const DataProcessingSoftware &software) | IdentificationData |
registerDataProcessingStep(const DataProcessingStep &step) | IdentificationData |
registerDataProcessingStep(const DataProcessingStep &step, SearchParamRef search_ref) | IdentificationData |
registerDataQuery(const DataQuery &query) | IdentificationData |
registerDBSearchParam(const DBSearchParam &param) | IdentificationData |
registerIdentifiedCompound(const IdentifiedCompound &compound) | IdentificationData |
registerIdentifiedOligo(const IdentifiedOligo &oligo) | IdentificationData |
registerIdentifiedPeptide(const IdentifiedPeptide &peptide) | IdentificationData |
registerInputFile(const String &file) | IdentificationData |
registerMoleculeQueryMatch(const MoleculeQueryMatch &match) | IdentificationData |
registerParentMolecule(const ParentMolecule &parent) | IdentificationData |
registerParentMoleculeGrouping(const ParentMoleculeGrouping &grouping) | IdentificationData |
registerQueryMatchGroup(const QueryMatchGroup &group) | IdentificationData |
registerScoreType(const ScoreType &score) | IdentificationData |
removeFromSetIf_(ContainerType &container, PredicateType predicate) | IdentificationData | inline protected static
removeFromSetIfNotHashed_(ContainerType &container, const AddressLookup &lookup) | IdentificationData | inline protected static
removeMetaValue(const String &name) | MetaInfoInterface |
removeMetaValue(UInt index) | MetaInfoInterface |
score_types_ | IdentificationData | protected
ScoreType typedef | IdentificationData |
ScoreTypeRef typedef | IdentificationData |
ScoreTypes typedef | IdentificationData |
SearchParamRef typedef | IdentificationData |
setCurrentProcessingStep(ProcessingStepRef step_ref) | IdentificationData |
setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface |
setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface |
updateAddressLookup_(const ContainerType &container, AddressLookup &lookup) | IdentificationData | inline protected static
~MetaInfoInterface() | MetaInfoInterface |