| OpenMS 2.5.0

DeNovoIdentification.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Sandro Andreotti, Andreas Bertsch$
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
38 #include <OpenMS/METADATA/PeptideIdentification.h>
39 #include <OpenMS/KERNEL/StandardTypes.h>
40 #include <vector>
41
42 namespace OpenMS
43 {
51 class OPENMS_DLLAPI DeNovoIdentification :
52 public DefaultParamHandler
53 {
54 public:
55
59 DeNovoIdentification();
61
63 ~DeNovoIdentification() override;
64
66 DeNovoIdentification(const DeNovoIdentification & rhs);
68
70 DeNovoIdentification & operator=(const DeNovoIdentification & rhs);
71
73 virtual void getIdentifications(std::vector<PeptideIdentification> & ids, const PeakMap & exp) = 0;
74
76 virtual void getIdentification(PeptideIdentification & id, const PeakSpectrum & spectrum) = 0;
77
78 };
79
80 } // namespace OpenMS
81
OpenMS::DefaultParamHandler
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:91
OpenMS::MSExperiment
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
StandardTypes.h
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67
PeptideIdentification.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::DeNovoIdentification
Base class for de novo identification.
Definition: DeNovoIdentification.h:51
DefaultParamHandler.h
OpenMS::PeptideIdentification
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:62