| OpenMS 2.5.0

ITRAQLabeler Member List

This is the complete list of members for ITRAQLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification, const Size &pos) const | ITRAQLabeler | protected
BaseLabeler() | BaseLabeler |
channel_description_ | BaseLabeler | protected
channel_map_ | ITRAQLabeler | protected
ChannelInfo typedef | ITRAQLabeler |
ChannelMapType typedef | ITRAQLabeler |
check_defaults_ | DefaultParamHandler | protected
consensus_ | BaseLabeler | protected
create() | ITRAQLabeler | inline static
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getChannelIntensityName(const Size channel_index) const | BaseLabeler |
getConsensus() | BaseLabeler |
getDefaultParameters() const | BaseLabeler | virtual
getDefaults() const | DefaultParamHandler |
getDescription() const | BaseLabeler |
getItraqIntensity_(const Feature &f, const double MS2_RT_time) const | ITRAQLabeler | protected
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getProductName() | ITRAQLabeler | inline static
getRTProfileIntensity_(const Feature &f, const double MS2_RT_time) const | ITRAQLabeler | protected
getSubsections() const | DefaultParamHandler |
isotope_corrections_ | ITRAQLabeler | protected
IsotopeMatrices typedef | ITRAQLabeler |
itraq_type_ | ITRAQLabeler | protected
ITRAQLabeler() | ITRAQLabeler |
labelPeptide_(const Feature &feature, SimTypes::FeatureMapSim &result) const | ITRAQLabeler | protected
mergeFeatures_(Feature &labeled_channel_feature, const AASequence &unmodified_sequence, std::map< AASequence, Feature > &unlabeled_features_index) const | ITRAQLabeler | protected
mergeProteinAccessions_(Feature &target, const Feature &source) const | BaseLabeler | protected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps) | BaseLabeler | protected
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) override | ITRAQLabeler | virtual
postDigestHook(SimTypes::FeatureMapSimVector &) override | ITRAQLabeler | virtual
postIonizationHook(SimTypes::FeatureMapSimVector &) override | ITRAQLabeler | virtual
postRawMSHook(SimTypes::FeatureMapSimVector &) override | ITRAQLabeler | virtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) override | ITRAQLabeler | virtual
postRTHook(SimTypes::FeatureMapSimVector &) override | ITRAQLabeler | virtual
preCheck(Param &param) const override | ITRAQLabeler | virtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features) | BaseLabeler | protected
registerChildren() | BaseLabeler | static
rng_ | BaseLabeler | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng) | BaseLabeler | virtual
setUpHook(SimTypes::FeatureMapSimVector &) override | ITRAQLabeler | virtual
subsections_ | DefaultParamHandler | protected
updateMembers_() override | ITRAQLabeler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
y_labeling_efficiency_ | ITRAQLabeler | protected
~BaseLabeler() override | BaseLabeler |
~DefaultParamHandler() | DefaultParamHandler | virtual
~ITRAQLabeler() override | ITRAQLabeler |