OpenMS: PeptideIdentificationVisualizer Class Reference

| OpenMS 2.5.0

Public Slots | Public Member Functions | Protected Slots | Protected Attributes | List of all members
PeptideIdentificationVisualizer Class Reference

Class that displays all meta information for PeptideIdentification objects. More...

`#include <OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h>`

Inheritance diagram for PeptideIdentificationVisualizer:

## Public Slots

void | store () override
Public Slots inherited from BaseVisualizerGUI
virtual void | store ()=0
| Saves the changes made in the GUI to the object. More...

## Public Member Functions

| PeptideIdentificationVisualizer (bool editable=false, QWidget *parent=nullptr, MetaDataBrowser *caller=nullptr)
| Constructor. More...
void | load (PeptideIdentification &s, int tree_item_id)
| Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter. More...
Public Member Functions inherited from BaseVisualizerGUI
| BaseVisualizerGUI (bool editable=false, QWidget *parent=nullptr)
| Constructor. More...
bool | isEditable () const
| Returns if the values are editable. More...
Public Member Functions inherited from BaseVisualizer< PeptideIdentification >
void | load (PeptideIdentification &o)
| Loads the object that is to be edited. More...
virtual | ~BaseVisualizer ()

## Protected Slots

void | undo_ ()
| Undo the changes made in the GUI. More...
void | updateTree_ ()
| Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int) More...

## Protected Attributes

MetaDataBrowser * | pidv_caller_
| Pointer to MetaDataBrowser. More...
int | tree_id_
| The id of the item in the tree. More...
QLineEdit * | filter_threshold_
| Threshold for filtering by score. More...
Edit fields and buttons
QLineEdit * | identifier_
QLineEdit * | score_type_
QComboBox * | higher_better_
QLineEdit * | identification_threshold_
Protected Attributes inherited from BaseVisualizerGUI
QPushButton * | undo_button_
| Undo button. More...
QGridLayout * | mainlayout_
| The main layout. More...
UInt | row_
| Counter for the current grid row. More...
bool | editable_
| Edit flag. More...
Protected Attributes inherited from BaseVisualizer< PeptideIdentification >
PeptideIdentification * | ptr_
| Pointer to the object that is currently edited. More...
PeptideIdentification | temp_
| Copy of current object used to restore the original values. More...

## Additional Inherited Members

Signals inherited from BaseVisualizerGUI
void | sendStatus (std::string status)
| Sends a status message, if date is not in proper format. More...
Protected Member Functions inherited from BaseVisualizerGUI
void | addLabel_ (QString label)
| Adds a label to the grid layout. More...
void | addLabel_ (QString label, UInt row)
| Adds a label to a certain row. More...
void | addLineEdit_ (QLineEdit *&ptr, QString label)
| Adds a line edit field with label to the grid layout. More...
void | addIntLineEdit_ (QLineEdit *&ptr, QString label)
| Adds a line edit field to the grid layout including a int validator. More...
void | addDoubleLineEdit_ (QLineEdit *&ptr, QString label)
| Adds a line edit field to the grid layout including a double validator. More...
void | addLineEditButton_ (QString label, QLineEdit *&ptr1, QPushButton *&ptr2, QString buttonlabel)
| Adds a line edit field with label and button to the next free position in the grid. More...
void | addListView_ (QListWidget *&ptr, QString label)
| Adds a list edit field to the grid layout. More...
void | addTextEdit_ (QTextEdit *&ptr, QString label)
| Adds a text edit field to the grid layout. More...
void | addComboBox_ (QComboBox *&ptr, QString label)
| Adds a drop-down field to the grid layout. More...
void | addBooleanComboBox_ (QComboBox *&ptr, QString label)
| Adds a boolean drop-down field to the grid layout ( 'true'=1, 'false'=0 ). More...
void | fillComboBox_ (QComboBox *&ptr, const std::string *items, int item_count)
| Fills a combo box with string `items` (the number of strings is determined by `item_count`). More...
void | addVSpacer_ ()
| Adds vertical spacer. More...
void | addButton_ (QPushButton *&ptr, QString label)
| Adds a button to the next free position in the grid. More...
void | add2Buttons_ (QPushButton *&ptr1, QString label1, QPushButton *&ptr2, QString label2)
| Adds two buttons in a row. More...
void | addSeparator_ ()
| Adds a horizontal line as a separator. More...
void | finishAdding_ ()
| Adds buttons common to all visualizers. More...
Protected Member Functions inherited from BaseVisualizer< PeptideIdentification >
virtual void | update_ ()
| Updates the GUI from the temp_ variable. More...

## Detailed Description

Class that displays all meta information for PeptideIdentification objects.

This class provides all functionality to view the meta information of an object of type PeptideIdentification.

## Constructor & Destructor Documentation

## ◆ PeptideIdentificationVisualizer()

PeptideIdentificationVisualizer | ( | bool | editable = `false`,
|  | QWidget * | parent = `nullptr`,
|  | MetaDataBrowser * | caller = `nullptr`
| ) |  |

Constructor.

## Member Function Documentation

## ◆ load()

void load | ( | PeptideIdentification & | s,
|  | int | tree_item_id
| ) |  |

Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.

## ◆ store

void store | ( |  | ) |

overrideslot

## ◆ undo_

void undo_ | ( |  | ) |

protectedslot

Undo the changes made in the GUI.

## ◆ updateTree_

void updateTree_ | ( |  | ) |

protectedslot

Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int)

Calls MetaDataBrowser::updatePeptideHits(PeptideIdentification, int).
Updates the tree depending of the protein significance threshold.
Only ProteinHits with a score superior or equal to the current threshold will be displayed.

## Member Data Documentation

## ◆ filter_threshold_

QLineEdit* filter_threshold_

protected

Threshold for filtering by score.

## ◆ higher_better_

QComboBox* higher_better_

protected

## ◆ identification_threshold_

QLineEdit* identification_threshold_

protected

## ◆ identifier_

QLineEdit* identifier_

protected

## ◆ pidv_caller_

MetaDataBrowser* pidv_caller_

protected

Pointer to MetaDataBrowser.

## ◆ score_type_

QLineEdit* score_type_

protected

## ◆ tree_id_

int tree_id_

protected

The id of the item in the tree.