| OpenMS 2.5.0

ProteinResolver Member List

This is the complete list of members for ProteinResolver, including all inherited members.

binarySearchNodes_(String &seq, std::vector< PeptideEntry > &nodes, Size start, Size end) | ProteinResolver | private
buildingISDGroups_(std::vector< ProteinEntry > &protein_nodes, std::vector< PeptideEntry > &peptide_nodes, std::vector< ISDGroup > &isd_groups) | ProteinResolver | private
buildingMSDGroups_(std::vector< MSDGroup > &msd_groups, std::vector< ISDGroup > &isd_groups) | ProteinResolver | private
check_defaults_ | DefaultParamHandler | protected
clearResult() | ProteinResolver |
computeIntensityOfMSD_(std::vector< MSDGroup > &msd_groups) | ProteinResolver | private
countTargetDecoy(std::vector< MSDGroup > &msd_groups, ConsensusMap &consensus) | ProteinResolver |
countTargetDecoy(std::vector< MSDGroup > &msd_groups, std::vector< PeptideIdentification > &peptide_nodes) | ProteinResolver |
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
findPeptideEntry_(String seq, std::vector< PeptideEntry > &nodes) | ProteinResolver | private
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getPeptideHit(const ConsensusMap &consensus, const PeptideEntry *peptide) | ProteinResolver | static
getPeptideHit(const std::vector< PeptideIdentification > &peptide_nodes, const PeptideEntry *peptide) | ProteinResolver | static
getPeptideIdentification(const ConsensusMap &consensus, const PeptideEntry *peptide) | ProteinResolver | static
getPeptideIdentification(const std::vector< PeptideIdentification > &peptide_nodes, const PeptideEntry *peptide) | ProteinResolver | static
getResults() | ProteinResolver |
getSubsections() const | DefaultParamHandler |
includeMSMSPeptides_(std::vector< PeptideIdentification > &peptide_identifications, std::vector< PeptideEntry > &peptide_nodes) | ProteinResolver | private
includeMSMSPeptides_(ConsensusMap &consensus, std::vector< PeptideEntry > &peptide_nodes) | ProteinResolver | private
operator=(const ProteinResolver &rhs) | ProteinResolver |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
primaryProteins_(std::vector< PeptideEntry > &peptide_nodes, std::vector< Size > &reindexed_peptides) | ProteinResolver | private
protein_data_ | ProteinResolver | private
ProteinResolver() | ProteinResolver |
ProteinResolver(const ProteinResolver &rhs) | ProteinResolver |
reindexingNodes_(std::vector< MSDGroup > &msd_groups, std::vector< Size > &reindexed_proteins, std::vector< Size > &reindexed_peptides) | ProteinResolver | private
resolveConsensus(ConsensusMap &consensus) | ProteinResolver |
resolveID(std::vector< PeptideIdentification > &peptide_identifications) | ProteinResolver |
resolver_result_ | ProteinResolver | private
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProteinData(std::vector< FASTAFile::FASTAEntry > &protein_data) | ProteinResolver |
subsections_ | DefaultParamHandler | protected
traversePeptide_(PeptideEntry *pep_node, MSDGroup &group) | ProteinResolver | private
traverseProtein_(ProteinEntry *prot_node, MSDGroup &group) | ProteinResolver | private
updateMembers_() | DefaultParamHandler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProteinResolver() override | ProteinResolver |