| OpenMS 2.5.0

ExperimentalDesignFile.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Timo Sachsenberg, Lukas Zimmermann $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/DATASTRUCTURES/String.h>
38
39 #include <map>
40
41 namespace OpenMS
42 {
43 class ExperimentalDesign;
44 class TextFile;
108 class OPENMS_DLLAPI ExperimentalDesignFile
109 {
110 public:
111
112
114 static ExperimentalDesign load(const String &tsv_file, bool require_spectra_files);
115
116 private:
117 static bool isOneTableFile_(const TextFile& text_file);
118 static ExperimentalDesign parseOneTableFile_(const TextFile& text_file, const String& tsv_file, bool require_spectra_file);
119 static ExperimentalDesign parseTwoTableFile_(const TextFile& text_file, const String& tsv_file, bool require_spectra_file);
122 static void parseHeader_(
123 const StringList &header,
124 const String &filename,
125 std::map <String, Size> &column_map,
126 const std::set <String> &required,
127 const std::set <String> &optional,
128 bool allow_other_header);
129 };
130 }
131
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::ExperimentalDesignFile
Provides means to load an ExperimentalDesign from a TSV file.
Definition: ExperimentalDesignFile.h:108
String.h
OpenMS::ExperimentalDesign
Representation of the Experimental Design in OpenMS. Instances can be loaded via the ExperimentalDesi...
Definition: ExperimentalDesign.h:85
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::StringList
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
OpenMS::TextFile
This class provides some basic file handling methods for text files.
Definition: TextFile.h:46