| OpenMS 2.5.0

Here is a list of all class members with links to the classes they belong to:

### - l -

- L_ID : LayerData
- L_ID_ALL : LayerData
- L_INDEX : LayerData
- L_META_LABEL : LayerData
- L_NONE : LayerData
- label : ConsensusMap::ColumnHeader , ExperimentalDesign::MSFileSectionEntry , ParentMoleculeGrouping , LayerData
- Label() : MultiplexDeltaMassesGenerator::Label
- label : MzTabCVMetaData , SimpleSVM::Prediction
- label_ : Adduct , MassTrace
- label_delta_mass_ : MultiplexDeltaMassesGenerator
- label_long_short_ : MultiplexDeltaMassesGenerator
- label_mass_shift_ : FeatureFinderMultiplexAlgorithm
- label_master_list_ : MultiplexDeltaMassesGenerator
- label_set : MultiplexDeltaMasses::DeltaMass
- label_short_long_ : MultiplexDeltaMassesGenerator
- label_type : TransitionTSVFile::TSVTransition
- labelAsDIAData() : LayerData
- labelAsIonMobilityData() : LayerData
- LabeledPairFinder() : LabeledPairFinder
- labeler_ : MSSim
- LABELFREE : MSQuantifications
- LabelFreeLabeler() : LabelFreeLabeler
- LabelMode : Spectrum1DCanvas
- labelPeptide_() : ITRAQLabeler
- labels : SVMData
- labels_ : MultiplexDeltaMassesGenerator
- labels_list_ : MultiplexDeltaMassesGenerator
- LabelSet : MultiplexDeltaMasses
- labelSetToString() : MultiplexDeltaMasses
- LabelType : LayerData
- lambda_chrom_ : MSDataTransformingConsumer
- lambda_exp_settings_ : MSDataTransformingConsumer
- lambda_spec_ : MSDataTransformingConsumer
- LambdaScore : MRMFeatureSelector
- largePeaksBeforeFirstIsotope_() : DIAScoring
- last_ : SignalToNoiseEstimator< Container >
- last_invoke_ : ProgressLogger
- last_meta_ : ConsensusXMLFile , FeatureXMLFile , IdXMLFile
- last_mouse_pos_ : SpectrumCanvas
- last_name_ : ContactPerson
- last_package_ : SplineInterpolatedPeaks::Navigator
- lastconsensus() : SpectrumCheapDPCorr
- lastconsensus_ : SpectrumCheapDPCorr
- lastname_ : ContactPersonVisualizer
- layer_ : SpectraIdentificationViewWidget
- layer_data_ : LayerStatisticsDialog
- layer_dock_widget_ : TOPPViewBase
- layer_indices_1_ : SpectrumAlignmentDialog
- layer_indices_2_ : SpectrumAlignmentDialog
- layerActivated() : SpectrumCanvas , TOPPViewBase
- layerContextMenu() : TOPPViewBase
- LayerData() : LayerData
- layerDeactivated() : TOPPViewBase
- layerEdit() : TOPPViewBase
- layerFilterVisibilityChange() : TOPPViewBase
- layerModficationChange() : SpectrumCanvas
- layers_ : SpectrumCanvas
- layers_view_ : TOPPViewBase
- layerSelectionChange() : TOPPViewBase
- layerStatistics() : TOPPViewBase
- LayerStatisticsDialog() : LayerStatisticsDialog
- layerVisibilityChange() : TOPPViewBase
- layerZoomChanged() : SpectrumCanvas , TOPPViewBase
- LC_elution_peak_counter : ProcessData
- LCelutionArea : FeatureLCProfile
- LCElutionPeak() : LCElutionPeak
- LCelutionSignals : FeatureLCProfile
- LCID : Precursor
- LCMS() : LCMS
- lcms_ : FTPeakDetectController , IntegerMassDecomposer< ValueType, DecompositionValueType >
- LCMSCData() : LCMSCData
- lcmsMap : MS1FeatureMerger
- lcmsRuns_ : FTPeakDetectController
- LCprofile : SHFeature
- LD : IonSource
- LD_ALLDATA : XMLHandler
- LD_COUNTS_WITHOPTIONS : XMLHandler
- LD_RAWCOUNTS : XMLHandler
- leaveEvent() : SpectrumCanvas , TOPPASTreeView , TOPPASWidget
- LEFT : AxisPainter , Compomer
- left : PeakPickerCWT::PeakArea_
- left_boundary : PeakPickerMaxima::PeakCandidate , Range
- left_button_pressed_ : MultiGradientSelector
- left_child : BinaryTreeNode
- left_endpoint_ : PeakShape
- left_iterator_set_ : PeakShape
- left_neighbor : MoleculeParentMatch
- left_splitter_ : HistogramWidget
- LEFT_TERMINUS : MoleculeParentMatch
- left_width : PeakShape
- left_width_ : PeakPickerMRM
- leftWidth : PeakCandidate
- legend_ : AxisWidget
- legend_shown_ : Spectrum3DCanvas
- LESS_EQUAL : DataFilters
- letter : FuzzyStringComparator::StreamElement_
- level_ : LogStreamBuf
- levels_ : InMSLevelRange< SpectrumType >
- lever_area_height_ : MultiGradientSelector
- LevMarqFitter1D() : LevMarqFitter1D
- LexicographicComparator() : LexicographicComparator< Cmp1, Cmp2 >
- lexicographicComparator() : LexicographicComparator< Cmp1, Cmp2 >
- library_ : ConfidenceScoring , FeatureFinderIdentificationAlgorithm , TargetedSpectraExtractor::Comparator
- library_corr : OpenSwath_Scores
- library_dotprod : OpenSwath_Scores
- library_intensity : TransitionTSVFile::TSVTransition , LightTransition
- library_intensity_ : ReactionMonitoringTransition
- library_manhattan : OpenSwath_Scores
- library_norm_manhattan : OpenSwath_Scores
- library_rootmeansquare : OpenSwath_Scores
- library_sangle : OpenSwath_Scores
- LibSVMEncoder() : LibSVMEncoder
- libSVMVectorsToString() : LibSVMEncoder
- libSVMVectorToString() : LibSVMEncoder
- LIGHT : Tagging
- LIGHT_CHANNEL_ID_ : O18Labeler
- light_channel_label_ : ICPLLabeler
- LIGHT_FEATURE_MAPID_ : ICPLLabeler , SILACLabeler
- lightClone() : SpectrumAccessOpenMS , SpectrumAccessOpenMSCached , SpectrumAccessOpenMSInMemory , SpectrumAccessQuadMZTransforming , SpectrumAccessSqMass , SpectrumAccessTransforming , ISpectrumAccess
- LightCompound() : LightCompound
- LightTargetedExperiment() : LightTargetedExperiment
- LightTransition() : LightTransition
- limit_offset_ : MZTrafoModel
- limit_power_ : MZTrafoModel
- limit_scale_ : MZTrafoModel
- line_ : BaseException , GlobalExceptionHandler , FuzzyStringComparator::InputLine
- line_column : FuzzyStringComparator::PrefixInfo_
- line_num_1_ : FuzzyStringComparator
- line_num_1_max_ : FuzzyStringComparator
- line_num_2_ : FuzzyStringComparator
- line_num_2_max_ : FuzzyStringComparator
- line_position_ : FuzzyStringComparator::InputLine
- line_str_1_max_ : FuzzyStringComparator
- line_str_2_max_ : FuzzyStringComparator
- LINEAR : MassAnalyzer , MSNumpressCoder , MZTrafoModel
- linear_abs_mass_acc_ : MzMLSqliteHandler
- linear_fp_mass_acc : MSNumpressCoder::NumpressConfig , SqMassFile::SqMassConfig
- linear_gradient_ : Spectrum2DCanvas , Spectrum3DCanvas
- LINEAR_WEIGHTED : MZTrafoModel
- LinearInterpolation : InterpolationModel , LinearInterpolation< Key, Value >
- linearInterpolationAtY_() : MassTrace
- LinearRegression() : LinearRegression
- LinearRegressionWithoutIntercept() : LinearRegressionWithoutIntercept
- LinearResampler() : LinearResampler
- LinearResamplerAlign() : LinearResamplerAlign
- link_() : UTILProteomicsLFQ
- links : CsiFingerIdMzTabWriter::CsiAdapterHit
- linkZoom() : TOPPViewBase
- linkZoom_action_ : TOPPViewBase
- LIQUID : Sample
- list_ : ListTable , ParamXMLHandler
- list_of_ions_matched_ : SpectrumAnnotator
- listDelegate_ : ListEditor
- ListEditor() : ListEditor
- ListEditorDelegate() : ListEditorDelegate
- ListTable() : ListTable
- listTable_ : ListEditor
- LIT : MassAnalyzer
- llm_ : PeakIntensityPredictor
- llod_ : AbsoluteQuantitationMethod
- lloq_ : AbsoluteQuantitationMethod
- lm_back_ : TransformationModelInterpolated
- lm_front_ : TransformationModelInterpolated
- LM_XABSOLUTE_YABSOLUTE : Spectrum1DCanvas
- LM_XABSOLUTE_YPERCENT : Spectrum1DCanvas
- LM_XPERCENT_YABSOLUTE : Spectrum1DCanvas
- LM_XPERCENT_YPERCENT : Spectrum1DCanvas
- load() : AbsoluteQuantitationMethodFile , AbsoluteQuantitationStandardsFile , BaseVisualizer< ObjectType > , CachedmzML , ChromeleonFile , ConsensusXMLFile , CsvFile , CVMappingFile , DTA2DFile , DTAFile , EDTAFile , ExperimentalDesignFile , FASTAFile , FeatureXMLFile , GradientVisualizer , IdXMLFile , IMSAlphabet , IMSAlphabetParser< AlphabetElementType, Container, InputSource > , IndexedMzMLFileLoader , InspectOutfile
- LOAD : XMLHandler
- load() : KroenikFile , MascotGenericFile , MascotInfile , MascotXMLFile , MetaInfoVisualizer , MRMFeaturePickerFile , MRMFeatureQCFile , MS2File , MsInspectFile , MSPFile , MSPGenericFile , MzDataFile , MzIdentMLFile , MzMLFile , MzQuantMLFile , MzTabFile , MzXMLFile , OMSSACSVFile , OMSSAXMLFile , ParamEditor , ParamXMLFile , PepNovoOutfile , PeptideIdentificationVisualizer , PepXMLFile , PepXMLFileMascot , PercolatorOutfile , ProteinIdentificationVisualizer , ProtXMLFile , PTMXMLFile , QcMLFile , SequestOutfile , SpecArrayFile , SqMassFile , SVMData , SvmTheoreticalSpectrumGenerator , SvmTheoreticalSpectrumGeneratorSet , TextFile , ToolDescriptionFile , TOPPASResources , TOPPASScene , TraMLFile , TransformationXMLFile , UnimodXMLFile , XMassFile , XQuestResultXMLFile , XTandemXMLFile
- load_() : CachedmzML
- load_cached_ : FIAMSScheduler
- load_detail_ : XMLHandler
- load_empty_hits_ : OMSSAXMLFile
- load_proteins_ : OMSSAXMLFile
- loadBuffer() : MzMLFile
- loadContaminants() : RawMSSignalSimulation
- loadConvexhull_ : FeatureFileOptions
- loadData_() : GradientVisualizer , MetaInfoVisualizer
- LOADDETAIL : XMLHandler
- loaded_spectra_names_ : MSPGenericFile
- loadExperiment() : FileHandler
- loadExternalToolConfig_() : ToolHandler
- loadFeatures() : FileHandler
- loadFile() : TOPPViewBase
- loadFiles() : TOPPASBase , TOPPViewBase
- loadFromOBO() : ControlledVocabulary
- loadINI_() : ToolsDialog , TOPPASToolConfigDialog
- loadInternalToolConfig_() : ToolHandler
- loadIsotopeModel_() : FeatureFindingMetabo
- loadLibSVMProblem() : LibSVMEncoder
- loadMetaData_() : OnDiscMSExperiment
- loadModel() : SVMWrapper
- loadMzML() : SwathFile
- loadMzXML() : SwathFile
- loadPipelineResourceFile() : TOPPASBase
- loadPreferences() : TOPPASBase , TOPPViewBase
- loadPreprocessedDB_() : PrecursorIonSelectionPreprocessing
- loadPreprocessing() : PrecursorIonSelectionPreprocessing
- loadResources() : TOPPASScene
- loadSamples_() : FIAMSScheduler
- loadSize() : FeatureXMLFile , MzMLFile
- loadSplit() : SwathFile
- loadSqMass() : SwathFile
- loadSubordinates_ : FeatureFileOptions
- loadSwathFiles() : TOPPOpenSwathBase
- loadSwathFiles_() : TOPPOpenSwathBase
- loadTransitionList() : TOPPOpenSwathBase
- local_mz_range_ : FeatureFindingMetabo
- local_rt_range_ : FeatureFindingMetabo
- locality_weight : MRMFeatureSelector::SelectorParameters
- localization_scores : RNPxlReportRow
- LocalLinearMap() : LocalLinearMap
- locateTerm() : SemanticValidator
- location : FileMapping , MzIdentMLDOMHandler::DatabaseInput , MzTabMSRunMetaData , Peptide::Modification , LightModification
- LockMass() : InternalCalibration::LockMass
- log2_C_ : SimpleSVM
- log2_gamma_ : SimpleSVM
- log_ : FeatureFinderAlgorithmPicked , TOPPASBase , TOPPBase , TOPPViewBase
- log_cache_ : LogStreamBuf
- log_cache_counter_ : LogStreamBuf
- log_dest_ : FuzzyStringComparator
- log_eval_no_normalize() : GaussFitter::GaussFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , GumbelMaxLikelihoodFitter::GumbelDistributionFitResult
- log_mode_ : HistogramWidget
- log_model_threshold_ : EnzymaticDigestionLogModel
- log_occupancy : OPXLDataStructs::CrossLinkSpectrumMatch
- log_occupancy_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- log_occupancy_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- log_p_ : Compomer
- log_prob_ : Adduct
- log_sn_score : OpenSwath_Scores
- log_time_cache_ : LogStreamBuf
- log_transform_ : FeatureDistance
- log_type_ : TOPPBase
- LogConfigHandler() : LogConfigHandler
- logContextMenu() : TOPPViewBase
- logfactorial_() : HyperScore
- logger_ : MzDataHandler , MzIdentMLDOMHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , TraMLHandler
- logHeader_() : MascotRemoteQuery
- login() : MascotRemoteQuery
- logNotify() : LogStreamNotifier
- logOccupancyProb() : XQuestScores
- logOutputFileWritten() : TOPPASScene
- logsigma : GaussFitter::GaussFitResult
- LogState : TOPPASBase , TOPPViewBase
- LogStream() : LogStream , LogStreamBuf
- LogStreamBuf() : LogStreamBuf
- LogStreamNotifier() : LogStreamNotifier
- logToolCrashed() : TOPPASScene
- logToolFailed() : TOPPASScene
- logToolFinished() : TOPPASScene
- logToolStarted() : TOPPASScene
- logTOPPOutput() : TOPPASScene
- LogType : ProgressLogger
- logTypeToFactoryName_() : ProgressLogger
- LONE : CompNovoIonScoringBase
- long_name : MultiplexDeltaMassesGenerator::Label
- lookup : IdentificationData::ModifyMultiIndexRemoveParentMatches< ElementType >
- lookup_ : MascotXMLHandler , PepXMLFile
- LOOP : OPXLDataStructs
- lorentz_() : PeakPickerCWT
- LORENTZ_PEAK : PeakShape
- loss : SvmTheoreticalSpectrumGenerator::IonType
- loss_average_weight_ : Residue
- loss_db_ : SimpleTSGXLMS , TheoreticalSpectrumGeneratorXLMS
- loss_formulas_ : Residue
- Loss_function() : EmgGradientDescent , EmgGradientDescent_friend
- loss_H2O_ : SimpleTSGXLMS , TheoreticalSpectrumGeneratorXLMS
- loss_mono_weight_ : Residue
- loss_names_ : Residue
- loss_NH3_ : SimpleTSGXLMS , TheoreticalSpectrumGeneratorXLMS
- lostFocus() : OpenMSLineEdit
- low_mass_ions_ : Residue
- low_mz_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
- lower : SwathMap
- lower_ : LinearRegression
- LOWER_BOUND_ONLY : LPWrapper
- lowerq : SummaryStatistics< T >
- LowessSmoothing() : LowessSmoothing
- lowIntensityMSSignalThreshold_ : SuperHirnParameters
- lp_problem_ : LPWrapper
- LPWrapper() : LPWrapper
- LS_ERROR : TOPPASBase , TOPPViewBase
- LS_NOTICE : TOPPASBase , TOPPViewBase
- LS_WARNING : TOPPASBase , TOPPViewBase
- LSI : IonSource
- lWidth : PenaltyFactors