| OpenMS 2.5.0

TheoreticalSpectrumGenerator Member List

This is the complete list of members for TheoreticalSpectrumGenerator, including all inherited members.

a_intensity_ | TheoreticalSpectrumGenerator | protected
add_a_ions_ | TheoreticalSpectrumGenerator | protected
add_abundant_immonium_ions_ | TheoreticalSpectrumGenerator | protected
add_all_precursor_charges_ | TheoreticalSpectrumGenerator | protected
add_b_ions_ | TheoreticalSpectrumGenerator | protected
add_c_ions_ | TheoreticalSpectrumGenerator | protected
add_first_prefix_ion_ | TheoreticalSpectrumGenerator | protected
add_isotopes_ | TheoreticalSpectrumGenerator | protected
add_losses_ | TheoreticalSpectrumGenerator | protected
add_metainfo_ | TheoreticalSpectrumGenerator | protected
add_precursor_peaks_ | TheoreticalSpectrumGenerator | protected
add_x_ions_ | TheoreticalSpectrumGenerator | protected
add_y_ions_ | TheoreticalSpectrumGenerator | protected
add_z_ions_ | TheoreticalSpectrumGenerator | protected
addAbundantImmoniumIons_(PeakSpectrum &spec, const AASequence &peptide, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges) const | TheoreticalSpectrumGenerator | protected
addIsotopeCluster_(PeakSpectrum &spectrum, const AASequence &ion, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, Residue::ResidueType res_type, Int charge, double intensity) const | TheoreticalSpectrumGenerator | protected
addLosses_(PeakSpectrum &spectrum, const AASequence &ion, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, double intensity, Residue::ResidueType res_type, int charge) const | TheoreticalSpectrumGenerator | protected
addPeaks_(PeakSpectrum &spectrum, const AASequence &peptide, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, Residue::ResidueType res_type, Int charge=1) const | TheoreticalSpectrumGenerator | protected virtual
addPrecursorPeaks_(PeakSpectrum &spec, const AASequence &peptide, DataArrays::StringDataArray &ion_names, DataArrays::IntegerDataArray &charges, Int charge=1) const | TheoreticalSpectrumGenerator | protected virtual
b_intensity_ | TheoreticalSpectrumGenerator | protected
c_intensity_ | TheoreticalSpectrumGenerator | protected
check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSpectrum(PeakSpectrum &spec, const AASequence &peptide, Int min_charge, Int max_charge) const | TheoreticalSpectrumGenerator | virtual
getSubsections() const | DefaultParamHandler |
isotope_model_ | TheoreticalSpectrumGenerator | protected
max_isotope_ | TheoreticalSpectrumGenerator | protected
max_isotope_probability_ | TheoreticalSpectrumGenerator | protected
operator=(const TheoreticalSpectrumGenerator &tsg) | TheoreticalSpectrumGenerator |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
pre_int_ | TheoreticalSpectrumGenerator | protected
pre_int_H2O_ | TheoreticalSpectrumGenerator | protected
pre_int_NH3_ | TheoreticalSpectrumGenerator | protected
rel_loss_intensity_ | TheoreticalSpectrumGenerator | protected
residueTypeToIonLetter_(Residue::ResidueType res_type) | TheoreticalSpectrumGenerator | protected static
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
sort_by_position_ | TheoreticalSpectrumGenerator | protected
subsections_ | DefaultParamHandler | protected
TheoreticalSpectrumGenerator() | TheoreticalSpectrumGenerator |
TheoreticalSpectrumGenerator(const TheoreticalSpectrumGenerator &source) | TheoreticalSpectrumGenerator |
updateMembers_() override | TheoreticalSpectrumGenerator | virtual
warn_empty_defaults_ | DefaultParamHandler | protected
x_intensity_ | TheoreticalSpectrumGenerator | protected
y_intensity_ | TheoreticalSpectrumGenerator | protected
z_intensity_ | TheoreticalSpectrumGenerator | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~TheoreticalSpectrumGenerator() override | TheoreticalSpectrumGenerator |