| OpenMS 2.5.0

XQuestResultXMLHandler Member List

This is the complete list of members for XQuestResultXMLHandler, including all inherited members.

accessions_ | XQuestResultXMLHandler | private
ActionMode enum name | XMLHandler |
addMetaValues_(MetaInfoInterface &meta_info_interface) | XQuestResultXMLHandler | private
asBool_(const String &in) | XMLHandler | inline protected
asDateTime_(String date_string) | XMLHandler | inline protected
asDouble_(const String &in) | XMLHandler | inline protected
asFloat_(const String &in) | XMLHandler | inline protected
asInt_(const String &in) | XMLHandler | inline protected
asInt_(const XMLCh *in) | XMLHandler | inline protected
asUInt_(const String &in) | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
characters(const XMLCh *const chars, const XMLSize_t length) override | XMLHandler |
charges_ | XQuestResultXMLHandler | private
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler |
cpep_id_ | XQuestResultXMLHandler | private
cpro_id_ | XQuestResultXMLHandler | private
cross_linker_name_ | XQuestResultXMLHandler | private
current_spectrum_search_ | XQuestResultXMLHandler | private
cv_terms_ | XMLHandler | protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inline protected
decoy_string_ | XQuestResultXMLHandler | private
endElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname) override | XQuestResultXMLHandler |
enzymes | XQuestResultXMLHandler | static
enzymes_db_ | XQuestResultXMLHandler | private
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inline protected
error(const xercesc::SAXParseException &exception) override | XMLHandler |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
error_message_ | XMLHandler | mutable protected
errorString() | XMLHandler |
extractDateTime_(const String &xquest_datetime_string, DateTime &date_time) | XQuestResultXMLHandler | inline private
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
file_ | XMLHandler | protected
getLinkPosition_(const xercesc::Attributes &attributes, std::pair< SignedSize, SignedSize > &pair) | XQuestResultXMLHandler | private
getLoadDetail() const | XMLHandler | virtual
getMaxScore() const | XQuestResultXMLHandler |
getMinScore() const | XQuestResultXMLHandler |
getNumberOfHits() const | XQuestResultXMLHandler |
is_openpepxl_ | XQuestResultXMLHandler | private
LD_ALLDATA enum value | XMLHandler |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler |
LD_RAWCOUNTS enum value | XMLHandler |
LOAD enum value | XMLHandler |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler |
max_precursor_charge_ | XQuestResultXMLHandler | private
max_score_ | XQuestResultXMLHandler | private
min_precursor_charge_ | XQuestResultXMLHandler | private
min_score_ | XQuestResultXMLHandler | private
months | XQuestResultXMLHandler | static
ms_run_path_ | XQuestResultXMLHandler | private
mz_heavy_ | XQuestResultXMLHandler | private
mz_light_ | XQuestResultXMLHandler | private
n_hits_ | XQuestResultXMLHandler | private
open_tags_ | XMLHandler | protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
pep_ids_ | XQuestResultXMLHandler | private
peptide_id_meta_values_ | XQuestResultXMLHandler | private
prot_ids_ | XQuestResultXMLHandler | private
reset() | XMLHandler |
rt_heavy_ | XQuestResultXMLHandler | private
rt_light_ | XQuestResultXMLHandler | private
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual
setPeptideEvidence_(const String &prot_string, PeptideHit &pep_hit) | XQuestResultXMLHandler | private
sm_ | XMLHandler | protected
spectrum_index_heavy_ | XQuestResultXMLHandler | private
spectrum_index_light_ | XQuestResultXMLHandler | private
spectrum_input_file_ | XQuestResultXMLHandler | private
splitByMiddle(const String &input, const char separator) | XQuestResultXMLHandler | static
splitByNth(const String &input, const char separator, const Size n) | XQuestResultXMLHandler | static
startElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname, const xercesc::Attributes &attributes) override | XQuestResultXMLHandler |
STORE enum value | XMLHandler |
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
writeTo(std::ostream &os) override | XQuestResultXMLHandler | virtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inline static
XMLHandler(const String &filename, const String &version) | XMLHandler |
XQuestResultXMLHandler(const String &filename, std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids) | XQuestResultXMLHandler |
XQuestResultXMLHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &filename, const String &version) | XQuestResultXMLHandler |
~XMLHandler() override | XMLHandler |
~XQuestResultXMLHandler() override | XQuestResultXMLHandler |