| OpenMS 2.5.0

IsobaricQuantifierStatistics.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Stephan Aiche, Chris Bielow $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/CONCEPT/Types.h>
38
39 #include <map>
40
41 namespace OpenMS
42 {
43 class String;
44
48 struct OPENMS_DLLAPI IsobaricQuantifierStatistics
49 {
53 IsobaricQuantifierStatistics();
54
58 void reset();
59
60 Size channel_count;
61 Size iso_number_ms2_negative;
62 Size iso_number_reporter_negative;
63 Size iso_number_reporter_different;
64 double iso_solution_different_intensity;
65 double iso_total_intensity_negative;
66 Size number_ms2_total;
67 Size number_ms2_empty;
68 std::map<String, Size> empty_channels;
69
71 IsobaricQuantifierStatistics(const IsobaricQuantifierStatistics& other);
72
74 IsobaricQuantifierStatistics& operator=(const IsobaricQuantifierStatistics& rhs);
75 };
76 } // namespace
77
OpenMS::IsobaricQuantifierStatistics::iso_number_ms2_negative
Size iso_number_ms2_negative
number of MS2 spectra where one or more channels had negative solution
Definition: IsobaricQuantifierStatistics.h:61
OpenMS::IsobaricQuantifierStatistics::iso_number_reporter_different
Size iso_number_reporter_different
number of channels >0 where naive solution was different; happens when naive solution is negative in ...
Definition: IsobaricQuantifierStatistics.h:63
Types.h
OpenMS::IsobaricQuantifierStatistics::empty_channels
std::map< String, Size > empty_channels
Channel_ID -> Missing; indicating the number of empty channels from all MS2 scans, i.e., numbers are between number_ms2_empty and number_ms2_total.
Definition: IsobaricQuantifierStatistics.h:68
OpenMS::IsobaricQuantifierStatistics::iso_solution_different_intensity
double iso_solution_different_intensity
absolute intensity difference between both solutions (for channels > 0)
Definition: IsobaricQuantifierStatistics.h:64
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::IsobaricQuantifierStatistics::iso_total_intensity_negative
double iso_total_intensity_negative
only for spectra where naive solution is negative
Definition: IsobaricQuantifierStatistics.h:65
OpenMS::IsobaricQuantifierStatistics::number_ms2_total
Size number_ms2_total
total number of MS2 spectra
Definition: IsobaricQuantifierStatistics.h:66
OpenMS::IsobaricQuantifierStatistics
Statistics for quantitation performance and comparison of NNLS vs. naive method (aka matrix inversion...
Definition: IsobaricQuantifierStatistics.h:48
OpenMS::IsobaricQuantifierStatistics::iso_number_reporter_negative
Size iso_number_reporter_negative
number of channels where naive solution was negative
Definition: IsobaricQuantifierStatistics.h:62
OpenMS::IsobaricQuantifierStatistics::channel_count
Size channel_count
4plex, 6plex, or 8 plex?!
Definition: IsobaricQuantifierStatistics.h:60
OpenMS::IsobaricQuantifierStatistics::number_ms2_empty
Size number_ms2_empty
number of empty MS2 (no reporters at all)
Definition: IsobaricQuantifierStatistics.h:67
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127