| OpenMS 2.5.0

### - u -

- uisTransitions() : MRMAssay
- UnableToCalibrate() : UnableToCalibrate
- UnableToCreateFile() : UnableToCreateFile
- UnableToFit() : UnableToFit
- uncompressString() : ZlibCompression
- undo_() : AcquisitionInfoVisualizer , AcquisitionVisualizer , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , MetaInfoVisualizer , ModificationVisualizer , PeptideHitVisualizer , PeptideIdentificationVisualizer , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , ProteinIdentificationVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer , SourceFileVisualizer , SpectrumSettingsVisualizer , TaggingVisualizer
- unify() : SpectrumSettings
- UnimodXMLFile() : UnimodXMLFile
- UnimodXMLHandler() : UnimodXMLHandler
- UniqueIdGenerator() : UniqueIdGenerator
- UniqueIdInterface() : UniqueIdInterface
- uniqueIdToIndex() : UniqueIdIndexer< RandomAccessContainer >
- Unit() : CVTerm::Unit
- united() : DRange< D >
- UnnormalizedComparator() : UnnormalizedComparator
- unquote() : String , StringUtils
- unregister() : LogStreamNotifier
- UnregisteredParameter() : UnregisteredParameter
- unregisterStream() : StreamHandler
- unselectAll() : TOPPASScene
- untargetedMatching() : TargetedSpectraExtractor
- unWeightData() : TransformationModel
- unWeightDatum() : TransformationModel
- update() : AsymmetricStatistics< RealT > , BasicStatistics< RealT > , Param , QTCluster
- update_() : AcquisitionInfoVisualizer , AcquisitionVisualizer , BaseVisualizer< ObjectType > , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , ModificationVisualizer , PeptideHitVisualizer , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer , SourceFileVisualizer , Spectrum3DCanvas , SpectrumCanvas , SpectrumSettingsVisualizer , TaggingVisualizer
- update_CHRGMAP() : LCElutionPeak
- updateAddressLookup_() : IdentificationData
- updateAndMovePepIDs_() : IDMergerAlgorithm
- updateAxes() : SpectrumWidget
- updateBaseline() : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
- updateBoxStates() : IsotopeWaveletTransform< PeakType >
- updateCache_() : LayerData
- updateChannelMap() : ItraqConstants
- updateClusterProxies_() : FeatureGroupingAlgorithmKD
- updateColor() : TOPPASEdge
- updateCombinedILP() : PSLPFormulation
- updateCurrentFeature_() : FeatureXMLFile
- updateCurrentOutputFileNames() : TOPPASToolVertex
- updateCurrentPath() : TOPPASBase , TOPPViewBase
- updateCursor_() : SpectrumCanvas
- updateData_() : SpectraIdentificationViewWidget
- updateEdgeColors() : TOPPASScene
- updateEditorGeometry() : ListEditorDelegate , ParamEditorDelegate
- updateEntries() : SpectraIdentificationViewWidget , SpectraViewWidget
- updateExclusionList_() : OfflinePrecursorIonSelection
- updateFeatureILPVariables() : PSLPFormulation
- updateFeatureVariant_() : ILPDCWrapper
- updateFilterBar() : TOPPViewBase
- updateGridDimension_() : HashGrid< Cluster >
- updateHitRanks() : IDFilter
- updateHoveringEdgePos() : TOPPASScene
- updateHScrollbar() : SpectrumCanvas , SpectrumWidget
- updateIntensityScale() : Spectrum3DOpenGLCanvas
- updateIsotopeMatrixFromStringList() : ItraqConstants
- updateIterativeWeightedMeanMZ() : MassTraceDetection
- updateLayer() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- updateLayerBar() : TOPPViewBase
- updateMaximum() : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
- updateMeanMZ() : MassTrace
- updateMedianMZ() : MassTrace
- updateMedianRT() : MassTrace
- updateMembers_() : AbsoluteQuantitation , AccurateMassSearchEngine , AScore , BaseModel< D > , BayesianProteinInferenceAlgorithm , BiGaussFitter1D , BiGaussModel , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSumAgreeingIntensities , CompNovoIdentificationBase , CompNovoIdentificationCID , CompNovoIonScoringBase , ConsensusIDAlgorithm , ConsensusIDAlgorithmPEPIons , ConsensusIDAlgorithmPEPMatrix , DefaultParamHandler , DetectabilitySimulation , DiaPrescore , DIAScoring , EGHFitter1D , EGHModel , EGHTraceFitter , ElutionPeakDetection , EmgFitter1D , EmgGradientDescent , EmgModel , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , FeatureDeconvolution , FeatureDistance , FeatureFinderAlgorithmIsotopeWavelet , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , FeatureFinderIdentificationAlgorithm , FeatureFindingMetabo , FIAMSDataProcessor , Fitter1D , GaussFilter , GaussFitter1D , GaussModel , GaussTraceFitter , ICPLLabeler , IDMapper , IncludeExcludeTarget , InterpolationModel , IonizationSimulation , IsobaricChannelExtractor , IsobaricQuantifier , IsotopeFitter1D , IsotopeModel , ItraqEightPlexQuantitationMethod , ItraqFourPlexQuantitationMethod , ITRAQLabeler , KDTreeFeatureMaps , LevMarqFitter1D , LinearResampler , LinearResamplerAlign , LowessSmoothing , MapAlignmentAlgorithmKD , MapAlignmentAlgorithmPoseClustering , MapAlignmentAlgorithmSpectrumAlignment , MapAlignmentAlgorithmTreeGuided , MascotGenericFile , MascotRemoteQuery , MassDecompositionAlgorithm , MassTraceDetection , MaxLikeliFitter1D , MetaboliteFeatureDeconvolution , MetaboliteSpectralMatching , MRMDecoy , MRMFeatureFilter , MRMFeatureFinderScoring , MRMMapping , MRMTransitionGroupPicker , MSPGenericFile , MSSim , NLargest , Normalizer , NucleicAcidSpectrumGenerator , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , OptimizePeakDeconvolution , PeakIntegrator , PeakPickerCWT , PeakPickerHiRes , PeakPickerIterative , PeakPickerMRM , PeptideAndProteinQuant , PeptideIndexing , PrecursorIonSelection , PrecursorIonSelectionPreprocessing , ProductModel< 2 > , RawMSSignalSimulation , ReactionMonitoringTransition , RTSimulation , SavitzkyGolayFilter , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , SILACLabeler , SimplePairFinder , SimpleSearchEngineAlgorithm , SimpleTSGXLMS , SiriusAdapterAlgorithm , SONARScoring , SpectraMerger::SpectraDistance_ , SpectrumAnnotator , StablePairFinder , SvmTheoreticalSpectrumGenerator , SwathMapMassCorrection , TargetedSpectraExtractor , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS , TMTElevenPlexQuantitationMethod , TMTSixPlexQuantitationMethod , TMTSixteenPlexQuantitationMethod , TMTTenPlexQuantitationMethod , TraceFitter , TransitionTSVFile , TwoDOptimization , XFDRAlgorithm
- updateMenu() : TOPPASBase , TOPPViewBase
- updateMinElement() : DistanceMatrix< Value >
- updateObjFunction_() : PSLPFormulation
- updateOutpuMap_() : IsobaricIsotopeCorrector
- updatePeptideHitAnnotations_() : LayerData
- updatePercentageFactor_() : Spectrum1DCanvas
- updatePosition() : FuzzyStringComparator::InputLine
- updateProcessLog() : TOPPViewBase
- updateProjections() : Spectrum2DCanvas , Spectrum2DWidget
- updateProteinGroups() : IDFilter
- updateProteinReferences() : IDFilter
- updateRanges() : ConsensusMap , FeatureMap , LayerData , MSChromatogram , MSExperiment , MSSpectrum , RangeManager< D >
- updateRanges_() : RangeManager< D >
- updateRecentMenu_() : TOPPViewBase
- updateRTConstraintsForSequentialILP() : PSLPFormulation
- updateScores() : PosteriorErrorProbabilityModel
- updateScrollbars_() : Spectrum1DCanvas , Spectrum2DCanvas , SpectrumCanvas
- updateSmoothedMaxRT() : MassTrace
- updateSmoothedWeightedMeanRT() : MassTrace
- updateStepSizeConstraint() : PSLPFormulation
- updateTabBar() : TOPPASBase , TOPPViewBase
- updateToolBar() : TOPPASBase , TOPPViewBase
- updateTOPPOutputLog() : TOPPASBase
- updateTree_() : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
- updateUniqueIdToIndex() : UniqueIdIndexer< RandomAccessContainer >
- updateViewBar() : TOPPViewBase
- updateViewMode_() : TOPPViewOpenDialog
- updateVScrollbar() : SpectrumCanvas , SpectrumWidget
- updateWeightedMeanMZ() : MassTrace
- updateWeightedMeanRT() : MassTrace
- updateWeightedMZsd() : MassTrace
- updateWhiteMSExperiment_() : MultiplexFiltering
- updateWindowTitle() : INIFileEditorWindow
- uploadProgress() : MascotRemoteQuery
- usage() : SysInfo::MemUsage
- usePPM() : CalibrationData
- UTILProteomicsLFQ() : UTILProteomicsLFQ