| OpenMS 2.5.0

### - d -

- d : RANSACParam
- d_ : CubicSpline2d
- d_intensity_ : NucleicAcidSpectrumGenerator
- data : BinaryDataArray , MzMLHandler::ChromatogramData , MzMLHandler::SpectrumData
- DATA : LCMSCData
- data : OSBinaryDataArray , XCorrArrayType
- data_ : CalibrationData , DataValue , FASTAContainer< TFI_Vector > , KDTreeFeatureNode , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , ProcessData , SimpleSVM , TransformationDescription , TransformationXMLFile
- data_bg_ : FASTAContainer< TFI_File >
- data_fg_ : FASTAContainer< TFI_File >
- data_given_ : TransformationModelLinear
- data_graph : Pattern< TNeedle, FuzzyAC >
- data_host : Pattern< TNeedle, FuzzyAC >
- data_id : DataQuery
- data_keywordIndex : PatternAuxData< TNeedle >
- data_lastState : PatternAuxData< TNeedle >
- data_length_ : IsotopeWaveletTransform< PeakType >
- data_map_outputNodes : Pattern< TNeedle, FuzzyAC >
- data_needleLength : PatternAuxData< TNeedle >
- data_node_depth : Pattern< TNeedle, FuzzyAC >
- data_processing_ : ChromatogramSettings , ConsensusMap , FeatureMap , MzDataHandler , MzXMLHandler , MetaInfoDescription , SpectrumSettings
- data_processings_ : MSQuantifications
- data_queries_ : IdentificationData
- data_query_lookup_ : IdentificationData
- data_query_ref : MoleculeQueryMatch
- data_to_decode_ : MzDataHandler
- data_to_encode_ : MzDataHandler
- data_type : MzMLHandlerHelper::BinaryData
- database : DBSearchParam , MzTabNucleicAcidSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
- database_ : SequestInfile , SiriusAdapterAlgorithm
- database_name_ : AccurateMassSearchEngine
- database_ref : MzIdentMLDOMHandler::DBSequence
- database_version : DBSearchParam , MzTabNucleicAcidSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
- database_version_ : AccurateMassSearchEngine
- date : MzIdentMLDOMHandler::DatabaseInput
- date_ : MascotXMLHandler , PepXMLFile , ProteinIdentification
- date_time : DataProcessingStep
- date_time_string_ : MascotXMLHandler
- datetime_ : ExperimentalSettings , ExperimentalSettingsVisualizer
- db : ProteinIdentification::SearchParameters
- db_ : InspectInfile , MascotInfile , ProteinIdentificationVisualizer , SqliteConnector
- db_map_ : MzIdentMLDOMHandler
- db_mapping_file_ : AccurateMassSearchEngine
- db_mass_ : AccurateMassSearchResult
- db_pos_length_ : InspectOutfile
- db_search_params_ : IdentificationData
- db_search_steps_ : IdentificationData
- db_sq_map_ : MzIdentMLDOMHandler
- db_struct_file_ : AccurateMassSearchEngine
- db_version : ProteinIdentification::SearchParameters
- db_version_ : ProteinIdentificationVisualizer
- debug_ : FeatureFinderAlgorithmPicked , MapAlignmentAlgorithmSpectrumAlignment
- debug_im_file_ : SwathMapMassCorrection
- debug_level_ : FeatureFinderIdentificationAlgorithm , SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects , TOPPBase
- debug_lvl_ : BayesianProteinInferenceAlgorithm
- DEBUG_MASS_END : LCElutionPeak
- DEBUG_MASS_START : LCElutionPeak
- debug_mz_file_ : SwathMapMassCorrection
- debug_streams_ : LogConfigHandler
- debugmatrix_ : MapAlignmentAlgorithmSpectrumAlignment
- debugscorematrix_ : MapAlignmentAlgorithmSpectrumAlignment
- debugtraceback_ : MapAlignmentAlgorithmSpectrumAlignment
- decoded_char : MzMLHandlerHelper::BinaryData
- decoded_double_list_ : MzDataHandler
- decoded_list_ : MzDataHandler
- decoder_ : Base64
- decomp_ : MassDecomposition
- decomp_cache_ : CompNovoIdentificationBase
- decomp_weights_precision_ : CompNovoIdentificationBase
- decomposer_ : RealMassDecomposer , MassDecompositionAlgorithm
- decomposition_map : SIPPeptide
- decon_ms1_mz_tol_ : SwathQC
- deconvolution_ : PeakPickerCWT
- decoy : TransitionTSVFile::TSVTransition , LightTransition
- decoy_index_ : ConfidenceScoring
- decoy_prefix_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- decoy_string_ : XQuestResultXMLHandler , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , PeptideIndexing , XFDRAlgorithm
- decoy_type_ : ReactionMonitoringTransition
- DEF_COSINE_SIMILARITY : TOPPGNPSExport
- DEF_PRECURSOR_MZ_TOLERANCE : TOPPGNPSExport
- DEF_PRECURSOR_RT_TOLERANCE : TOPPGNPSExport
- default_array_length : MzMLHandler::ChromatogramData , MzMLHandler::SpectrumData
- default_array_length_ : MzMLHandler
- default_baseloss_ : Ribonucleotide
- DEFAULT_BIN_OFFSET_HIRES : BinnedSpectrum
- DEFAULT_BIN_OFFSET_LOWRES : BinnedSpectrum
- DEFAULT_BIN_WIDTH_HIRES : BinnedSpectrum
- DEFAULT_BIN_WIDTH_LOWRES : BinnedSpectrum
- default_charge_ : ParentPeakMower
- default_dir_ : ToolsDialog , TOPPASToolConfigDialog
- default_ms_level_ : DTAFile
- default_nterm_mods_ : XTandemXMLFile
- default_parameters_file_ : XTandemInfile
- default_processing_ : MzMLHandler
- default_scan_regexp : SpectrumLookup
- default_value : ParameterInformation
- defaultArrayLength : Chromatogram , Spectrum , OSChromatogram , OSSpectrum
- defaults_ : DefaultParamHandler
- deisotope_mode_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- delay_ : AcqusHandler
- delay_in_seconds_ : FileWatcher
- delete_buffer_ : LogStream
- delim_ : MSstatsFile
- DELTA_CN : MS2Info
- delta_cn_weights_ : SequestOutfile
- delta_mass : MultiplexDeltaMasses::DeltaMass , MultiplexDeltaMassesGenerator::Label
- delta_mass_weights_ : SequestOutfile
- delta_masses_ : MultiplexDeltaMasses
- delta_masses_list_ : MultiplexDeltaMassesGenerator
- denominator_ref_ : ConsensusFeature::Ratio
- des : SiriusMSFile::CompoundInfo
- desc_ : TOPPASBase
- description : ControlledVocabulary::CVTerm , FASTAFile::FASTAEntry , ParentMolecule , IsobaricQuantitationMethod::IsobaricChannelInformation , ItraqConstants::ChannelInfo , MultiplexDeltaMassesGenerator::Label , MzTabMetaData , MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSampleMetaData , MzTabSmallMoleculeSectionRow , MzTabStudyVariableMetaData , Param::ParamEntry , Param::ParamIterator::TraceInfo , Param::ParamNode , ParameterInformation , PepXMLFile::AminoAcidModification , OSBinaryDataArray
- description_ : ConsensusFeature::Ratio
- description_text_ : TOPPASScene
- descriptions_ : ParamXMLHandler
- descriptors : SvmTheoreticalSpectrumGenerator::DescriptorSet
- detectableIsotopeFactor_ : SuperHirnParameters
- detecting_transition : TransitionTSVFile::TSVTransition , LightTransition
- detector : MzTabInstrumentMetaData
- dfs_color_ : TOPPASVertex
- dh_ : AhoCorasickAmbiguous
- dia_byseries_intensity_min_ : DIAScoring
- dia_byseries_ppm_diff_ : DIAScoring
- dia_centroided_ : DIAScoring , SONARScoring
- dia_extract_window_ : DiaPrescore , DIAScoring , SONARScoring
- dia_extraction_ppm_ : DIAScoring , SONARScoring
- dia_nr_charges_ : DIAScoring
- dia_nr_isotopes_ : DIAScoring
- diascoring_ : MRMFeatureFinderScoring
- diff_average_mass_ : ResidueModification
- diff_exponent_ : SimplePairFinder
- diff_formula_ : UnimodXMLHandler , ResidueModification
- diff_intercept_ : SimplePairFinder
- diff_mono_mass_ : ResidueModification
- diff_score : IDDecoyProbability::Transformation_
- digested_db_ : Contaminants
- digestion_ : IDFilter::DigestionFilter , IDFilter::PeptideDigestionFilter
- digestion_enzyme : DBSearchParam , ProteinIdentification::SearchParameters
- digestion_time_ : Digestion
- digestionenzyme_ : DigestionVisualizer
- digestionPH_ : DigestionVisualizer
- digestiontemperature_ : DigestionVisualizer
- digestiontime_ : DigestionVisualizer
- dilution_factor : AbsoluteQuantitationStandards::featureConcentration , AbsoluteQuantitationStandards::runConcentration
- dim_ : FeatureXMLFile
- dimension_name_full_ : Peak2D
- dimension_name_short_ : Peak2D
- dimension_unit_full_ : Peak2D
- dimension_unit_short_ : Peak2D
- dimensionsize_ : DistanceMatrix< Value >
- disable_parsing_ : FeatureXMLFile
- disease : MzTabSampleMetaData
- dist_ : HistogramWidget , OptimizePeakDeconvolution , UniqueIdGenerator
- distance : BinaryTreeNode
- distance_ : MinimumDistance
- distance_it_for_cluster_idx_ : GridBasedClustering< Metric >
- distances_ : GridBasedClustering< Metric >
- distribution_ : IsotopeDistribution
- distributions_ : ProductModel< 2 >
- dlg_ : GUIProgressLoggerImpl
- dm_elements_2d_ : TOPPViewBase
- dm_hull_2d_ : TOPPViewBase
- dm_hulls_2d_ : TOPPViewBase
- dm_ident_2d_ : TOPPViewBase
- dm_label_2d_ : TOPPViewBase
- dm_precursors_2d_ : TOPPViewBase
- dm_unassigned_2d_ : TOPPViewBase
- document_id_ : IdXMLFile
- doi : Citation
- dotprod_score_dia : OpenSwath_Scores
- doWrite_ : OpenSwathOSWWriter , OpenSwathTSVWriter
- dps_ : MSDataWritingConsumer
- drag_start_pos_ : TOPPASTreeView
- draw_group_1d_ : TOPPViewBase
- draw_interesting_MZs_ : Spectrum1DCanvas
- draw_modes_ : Spectrum1DCanvas
- drift_time : TransitionTSVFile::TSVTransition , LightCompound
- drift_time_ : MSSpectrum , Precursor , PeptideCompound
- drift_time_unit_ : MSSpectrum , Precursor
- drift_window_low_ : Precursor
- drift_window_up_ : Precursor
- dry_run_ : TOPPASScene
- dt_model_file_ : DetectabilitySimulation
- dw_ : AcqusHandler