| OpenMS 2.5.0

LibSVMEncoder Member List

This is the complete list of members for LibSVMEncoder, including all inherited members.

cmpOligos_(std::pair< Int, double > a, std::pair< Int, double > b) | LibSVMEncoder | private static
destroyProblem(svm_problem *problem) | LibSVMEncoder | static
encodeCompositionVector(const String &sequence, std::vector< std::pair< Int, double > > &encoded_vector, const String &allowed_characters="ACDEFGHIKLMNPQRSTVWY") | LibSVMEncoder |
encodeCompositionVectors(const std::vector< String > &sequences, const String &allowed_characters, std::vector< std::vector< std::pair< Int, double > > > &composition_vectors) | LibSVMEncoder |
encodeLibSVMProblem(const std::vector< svm_node *> &vectors, std::vector< double > &labels) | LibSVMEncoder |
encodeLibSVMProblemWithCompositionAndLengthVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters, UInt maximum_sequence_length) | LibSVMEncoder |
encodeLibSVMProblemWithCompositionLengthAndWeightVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters) | LibSVMEncoder |
encodeLibSVMProblemWithCompositionVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters) | LibSVMEncoder |
encodeLibSVMProblemWithOligoBorderVectors(const std::vector< String > &sequences, std::vector< double > &labels, UInt k_mer_length, const String &allowed_characters, UInt border_length, bool strict=false, bool unpaired=false, bool length_encoding=false) | LibSVMEncoder |
encodeLibSVMVector(const std::vector< std::pair< Int, double > > &feature_vector) | LibSVMEncoder |
encodeLibSVMVectors(const std::vector< std::vector< std::pair< Int, double > > > &feature_vectors, std::vector< svm_node *> &libsvm_vectors) | LibSVMEncoder |
encodeOligo(const AASequence &sequence, UInt k_mer_length, const String &allowed_characters, std::vector< std::pair< Int, double > > &values, bool is_right_border=false) | LibSVMEncoder |
encodeOligoBorders(String sequence, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::pair< Int, double > > &libsvm_vector, bool strict=false, bool unpaired=false, bool length_encoding=false) | LibSVMEncoder |
encodeProblemWithOligoBorderVectors(const std::vector< AASequence > &sequences, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::vector< std::pair< Int, double > > > &vectors) | LibSVMEncoder |
LibSVMEncoder() | LibSVMEncoder |
libSVMVectorsToString(svm_problem *vector, String &output) | LibSVMEncoder |
libSVMVectorToString(svm_node *vector, String &output) | LibSVMEncoder |
loadLibSVMProblem(const String &filename) | LibSVMEncoder |
predictPeptideRT(const std::vector< String > &sequences, SVMWrapper &svm, const String &allowed_characters="ACDEFGHIKLMNPQRSTVWY", UInt maximum_sequence_length=50) | LibSVMEncoder | inline static
storeLibSVMProblem(const String &filename, const svm_problem *problem) const | LibSVMEncoder |
~LibSVMEncoder() | LibSVMEncoder |