| OpenMS 2.5.0

DigestionEnzymeRNA.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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31 // $Maintainer: Hendrik Weisser $
32 // $Authors: Hendrik Weisser $
33 // --------------------------------------------------------------------------
34 //
35
36 #pragma once
37
38 #include <OpenMS/CHEMISTRY/DigestionEnzyme.h>
39
40 namespace OpenMS
41 {
57 class OPENMS_DLLAPI DigestionEnzymeRNA: public DigestionEnzyme
58 {
59 public:
61 void setCutsAfterRegEx(const String& value);
62
64 String getCutsAfterRegEx() const;
65
67 void setCutsBeforeRegEx(const String& value);
68
70 String getCutsBeforeRegEx() const;
71
73 void setThreePrimeGain(const String& value);
74
76 String getThreePrimeGain() const;
77
79 void setFivePrimeGain(const String& value);
80
82 String getFivePrimeGain() const;
83
89 bool setValueFromFile(const String& key, const String& value) override;
90
91 protected:
92 String three_prime_gain_;
93 String five_prime_gain_;
94 String cuts_after_regex_;
95 String cuts_before_regex_;
96 };
97
98 typedef DigestionEnzymeRNA RNase;
99 }
100
DigestionEnzyme.h
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::DigestionEnzymeRNA::cuts_after_regex_
String cuts_after_regex_
Definition: DigestionEnzymeRNA.h:94
OpenMS::DigestionEnzymeRNA
Representation of a digestion enzyme for RNA (RNase)
Definition: DigestionEnzymeRNA.h:57
OpenMS::DigestionEnzymeRNA::three_prime_gain_
String three_prime_gain_
Definition: DigestionEnzymeRNA.h:92
OpenMS::DigestionEnzyme
Abstract base class for digestion enzymes.
Definition: DigestionEnzyme.h:52
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::RNase
DigestionEnzymeRNA RNase
Definition: DigestionEnzymeRNA.h:98
OpenMS::DigestionEnzymeRNA::cuts_before_regex_
String cuts_before_regex_
Definition: DigestionEnzymeRNA.h:95
OpenMS::DigestionEnzymeRNA::five_prime_gain_
String five_prime_gain_
Definition: DigestionEnzymeRNA.h:93