| OpenMS 2.5.0

MockObjects.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
38 #include <OpenMS/OPENSWATHALGO/DATAACCESS/ITransition.h>
39
40 #include <boost/shared_ptr.hpp>
41 #include <map>
42 #include <vector>
43 #include <string>
44
45 namespace OpenSwath
46 {
47
51 class OPENSWATHALGO_DLLAPI MockFeature :
52 public OpenSwath::IFeature
53 {
54 public:
55
56 MockFeature();
57
58 ~MockFeature() override;
59
60 void getRT(std::vector<double>& rt) const override;
61
62 void getIntensity(std::vector<double>& intens) const override;
63
64 float getIntensity() const override;
65
66 double getRT() const override;
67
68 std::vector<double> m_rt_vec;
69 std::vector<double> m_intensity_vec;
70 float m_intensity;
71 double m_rt;
72 };
73
77 class OPENSWATHALGO_DLLAPI MockMRMFeature :
78 public OpenSwath::IMRMFeature
79 {
80 public:
81
82 MockMRMFeature();
83
84 ~MockMRMFeature() override;
85
86 boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID) override;
87
88 boost::shared_ptr<OpenSwath::IFeature> getPrecursorFeature(std::string nativeID) override;
89
90 std::vector<std::string> getNativeIDs() const override;
91
92 std::vector<std::string> getPrecursorIDs() const override;
93
94 float getIntensity() const override;
95
96 double getRT() const override;
97
98 size_t size() const override;
99
100 std::map<std::string, boost::shared_ptr<MockFeature> > m_features;
101 std::map<std::string, boost::shared_ptr<MockFeature> > m_precursor_features;
102 float m_intensity;
103 double m_rt;
104 };
105
109 class OPENSWATHALGO_DLLAPI MockTransitionGroup :
110 public OpenSwath::ITransitionGroup
111 {
112 public:
113
114 MockTransitionGroup();
115
116 ~MockTransitionGroup() override;
117
118 std::size_t size() const override;
119
120 std::vector<std::string> getNativeIDs() const override;
121
122 void getLibraryIntensities(std::vector<double>& intensities) const override;
123
124 std::size_t m_size;
125 std::vector<std::string> m_native_ids;
126 std::vector<double> m_library_intensities;
127 };
128
129
133 class OPENSWATHALGO_DLLAPI MockSignalToNoise :
134 public OpenSwath::ISignalToNoise
135 {
136 public:
137 MockSignalToNoise();
138
139 double getValueAtRT(double /* RT */) override;
140
141 double m_sn_value;
142 };
143
144 } //end namespace OpenMS
145
OpenSwath
Definition: MRMScoring.h:49
OpenSwath::IMRMFeature
Definition: ITransition.h:56
OpenSwath::MockFeature::m_intensity
float m_intensity
Definition: MockObjects.h:70
OpenSwath::MockTransitionGroup
Mock object implementing ITransitionGroup.
Definition: MockObjects.h:109
OpenSwath::MockTransitionGroup::m_size
std::size_t m_size
Definition: MockObjects.h:124
OpenSwath::MockFeature::m_rt_vec
std::vector< double > m_rt_vec
Definition: MockObjects.h:68
OpenSwath::ISignalToNoise
Definition: ITransition.h:77
OpenSwath::IFeature
Definition: ITransition.h:46
OpenSwath::MockMRMFeature::m_precursor_features
std::map< std::string, boost::shared_ptr< MockFeature > > m_precursor_features
Definition: MockObjects.h:101
OpenSwath::MockFeature::m_intensity_vec
std::vector< double > m_intensity_vec
Definition: MockObjects.h:69
OpenSwath::MockSignalToNoise::m_sn_value
double m_sn_value
Definition: MockObjects.h:141
OpenSwath::MockTransitionGroup::m_library_intensities
std::vector< double > m_library_intensities
Definition: MockObjects.h:126
OpenSwath::MockMRMFeature
Mock object implementing IMRMFeature.
Definition: MockObjects.h:77
OpenSwath::ITransitionGroup
Definition: ITransition.h:69
OpenSwath::MockTransitionGroup::m_native_ids
std::vector< std::string > m_native_ids
Definition: MockObjects.h:125
OpenSwath::MockMRMFeature::m_rt
double m_rt
Definition: MockObjects.h:103
OpenSwath::MockSignalToNoise
Mock object implementing ISignalToNoise.
Definition: MockObjects.h:133
OpenSwath::MockFeature
Mock object implementing IFeature.
Definition: MockObjects.h:51
OpenSwath::MockMRMFeature::m_features
std::map< std::string, boost::shared_ptr< MockFeature > > m_features
Definition: MockObjects.h:100
OpenSwath::MockMRMFeature::m_intensity
float m_intensity
Definition: MockObjects.h:102
ITransition.h
OpenSwath::MockFeature::m_rt
double m_rt
Definition: MockObjects.h:71