OpenMS: Member List

| OpenMS 2.5.0

MascotXMLHandler Member List

This is the complete list of members for MascotXMLHandler, including all inherited members.

ActionMode enum name | XMLHandler |
actual_peptide_evidence_ | MascotXMLHandler | private
actual_peptide_hit_ | MascotXMLHandler | private
actual_protein_hit_ | MascotXMLHandler | private
actual_query_ | MascotXMLHandler | private
actual_title_ | MascotXMLHandler | private
asBool_(const String &in) | XMLHandler | inlineprotected
asDateTime_(String date_string) | XMLHandler | inlineprotected
asDouble_(const String &in) | XMLHandler | inlineprotected
asFloat_(const String &in) | XMLHandler | inlineprotected
asInt_(const String &in) | XMLHandler | inlineprotected
asInt_(const XMLCh *in) | XMLHandler | inlineprotected
asUInt_(const String &in) | XMLHandler | inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
character_buffer_ | MascotXMLHandler | private
characters(const XMLCh *const chars, const XMLSize_t) override | MascotXMLHandler |
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler |
cv_terms_ | XMLHandler | protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected
date_ | MascotXMLHandler | private
date_time_string_ | MascotXMLHandler | private
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | MascotXMLHandler |
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected
error(const xercesc::SAXParseException &exception) override | XMLHandler |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
error_message_ | XMLHandler | mutableprotected
errorString() | XMLHandler |
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
file_ | XMLHandler | protected
getLoadDetail() const | XMLHandler | virtual
id_data_ | MascotXMLHandler | private
identifier_ | MascotXMLHandler | private
LD_ALLDATA enum value | XMLHandler |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler |
LD_RAWCOUNTS enum value | XMLHandler |
LOAD enum value | XMLHandler |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler |
lookup_ | MascotXMLHandler | private
major_version_ | MascotXMLHandler | private
MascotXMLHandler(ProteinIdentification &protein_identification, std::vector< PeptideIdentification > &identifications, const String &filename, std::map< String, std::vector< AASequence > > &peptides, const SpectrumMetaDataLookup &lookup) | MascotXMLHandler |
minor_version_ | MascotXMLHandler | private
modified_peptides_ | MascotXMLHandler | private
no_rt_error_ | MascotXMLHandler | private
open_tags_ | XMLHandler | protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected
peptide_identification_index_ | MascotXMLHandler | private
protein_identification_ | MascotXMLHandler | private
remove_fixed_mods_ | MascotXMLHandler | private
reset() | XMLHandler |
search_parameters_ | MascotXMLHandler | private
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual
sm_ | XMLHandler | protected
splitModificationBySpecifiedAA(String mod) | MascotXMLHandler | static
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | MascotXMLHandler |
STORE enum value | XMLHandler |
tag_ | MascotXMLHandler | private
tags_open_ | MascotXMLHandler | private
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
writeTo(std::ostream &) | XMLHandler | virtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic
XMLHandler(const String &filename, const String &version) | XMLHandler |
~MascotXMLHandler() override | MascotXMLHandler |
~XMLHandler() override | XMLHandler |