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TMTTenPlexQuantitationMethod.h
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Stephan Aiche $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/config.h>
38
39 #include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>
40
41 namespace OpenMS
42 {
48 class OPENMS_DLLAPI TMTTenPlexQuantitationMethod :
49 public IsobaricQuantitationMethod
50 {
51 public:
53 TMTTenPlexQuantitationMethod();
54
56 ~TMTTenPlexQuantitationMethod() = default;
57
59 TMTTenPlexQuantitationMethod(const TMTTenPlexQuantitationMethod& other);
60
62 TMTTenPlexQuantitationMethod & operator=(const TMTTenPlexQuantitationMethod& rhs);
63
66
67 const String& getMethodName() const override;
68
69 const IsobaricChannelList& getChannelInformation() const override;
70
71 Size getNumberOfChannels() const override;
72
73 Matrix<double> getIsotopeCorrectionMatrix() const override;
74
75 Size getReferenceChannel() const override;
76
78
79 private:
81 IsobaricChannelList channels_;
82
84 static const String name_;
85
87 Size reference_channel_;
88
90 static const std::vector<String> channel_names_;
91
92 protected:
94 void setDefaultParams_();
95
97 void updateMembers_() override;
98
99 };
100 } // namespace
101
OpenMS::TMTTenPlexQuantitationMethod::name_
static const String name_
The name of the quantitation method.
Definition: TMTTenPlexQuantitationMethod.h:84
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::IsobaricQuantitationMethod
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:54
OpenMS::TMTTenPlexQuantitationMethod::reference_channel_
Size reference_channel_
The reference channel for this experiment.
Definition: TMTTenPlexQuantitationMethod.h:87
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::TMTTenPlexQuantitationMethod::channel_names_
static const std::vector< String > channel_names_
List of available channel names as they are presented to the user.
Definition: TMTTenPlexQuantitationMethod.h:90
OpenMS::IsobaricQuantitationMethod::IsobaricChannelList
std::vector< IsobaricChannelInformation > IsobaricChannelList
Definition: IsobaricQuantitationMethod.h:109
OpenMS::TMTTenPlexQuantitationMethod
TMT 10plex quantitation to be used with the IsobaricQuantitation.
Definition: TMTTenPlexQuantitationMethod.h:48
OpenMS::TMTTenPlexQuantitationMethod::channels_
IsobaricChannelList channels_
the actual information on the different tmt10plex channels.
Definition: TMTTenPlexQuantitationMethod.h:81
OpenMS::Matrix< double >
IsobaricQuantitationMethod.h
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127