| OpenMS 2.5.0

Classes | Namespaces
SiriusMzTabWriter.h File Reference
`#include <OpenMS/FORMAT/MzTabFile.h>`

Go to the source code of this file.

## Classes

class | SiriusMzTabWriter
struct | SiriusMzTabWriter::SiriusAdapterHit
| Internal structure used in SiriusAdapter that is used for the conversion of the sirius output to an mzTab.SiriusAdapterHit: formula (String) - Sumformula adduct (String) - Assigned adduct rank (int) - Rank of the possible sumformula for a compound (spectrum) calculated by Sirius score (double) - Overall score of the possible sumformula for a compound (spectrum) calculated by Sirius treescore (double) - Fragmentation pattern score isoscore (double) - Isotope pattern score explainedpeaks (int) - Number of explained peaks explainedintensity (double) - Relative amount of explained intensity. More...
struct | SiriusMzTabWriter::SiriusAdapterIdentification
struct | SiriusMzTabWriter::SiriusAdapterRun

## Namespaces

| OpenMS
| Main OpenMS namespace.

## Class Documentation

## ◆ OpenMS::SiriusMzTabWriter::SiriusAdapterHit

struct OpenMS::SiriusMzTabWriter::SiriusAdapterHit

Internal structure used in SiriusAdapter that is used for the conversion of the sirius output to an mzTab.

SiriusAdapterHit: formula (String) - Sumformula adduct (String) - Assigned adduct rank (int) - Rank of the possible sumformula for a compound (spectrum) calculated by Sirius score (double) - Overall score of the possible sumformula for a compound (spectrum) calculated by Sirius treescore (double) - Fragmentation pattern score isoscore (double) - Isotope pattern score explainedpeaks (int) - Number of explained peaks explainedintensity (double) - Relative amount of explained intensity.

SiriusAdapterIdentification: scan_index (int) - Index of the spectrum used scan_number (int) - NativeId of the spectrum used feature_id (String) - FeatureId (if spectrum was assigned to a feature) hits (vector<SiriusAdapterHit>)

SiriusAdapterRun: identifications (vector<SiriusAdapterIdentification>)

Store a specific

Parameters

  number | of lines from sirius output

Returns
  mzTab

Class Members
String | adduct |
double | explainedintensity |
int | explainedpeaks |
String | formula |
double | isoscore |
int | rank |
double | score |
double | treescore |

## ◆ OpenMS::SiriusMzTabWriter::SiriusAdapterIdentification

struct OpenMS::SiriusMzTabWriter::SiriusAdapterIdentification

Class Members
String | feature_id |
vector< SiriusAdapterHit > | hits |
double | mz |
String | native_id |
double | rt |
int | scan_index |
int | scan_number |

## ◆ OpenMS::SiriusMzTabWriter::SiriusAdapterRun

struct OpenMS::SiriusMzTabWriter::SiriusAdapterRun

Class Members
vector< SiriusAdapterIdentification > | identifications |