| OpenMS 2.5.0

EnzymaticDigestion Member List

This is the complete list of members for EnzymaticDigestion, including all inherited members.

countMissedCleavages_(const std::vector< int > &cleavage_positions, Size seq_start, Size seq_end) const | EnzymaticDigestion | protected
digestAfterTokenize_(const std::vector< int > &fragment_positions, const StringView &sequence, std::vector< StringView > &output, Size min_length=0, Size max_length=-1) const | EnzymaticDigestion | protected
digestAfterTokenize_(const std::vector< int > &fragment_positions, const StringView &sequence, std::vector< std::pair< Size, Size >> &output, Size min_length=0, Size max_length=-1) const | EnzymaticDigestion | protected
digestUnmodified(const StringView &sequence, std::vector< StringView > &output, Size min_length=1, Size max_length=0) const | EnzymaticDigestion |
digestUnmodified(const StringView &sequence, std::vector< std::pair< Size, Size >> &output, Size min_length=1, Size max_length=0) const | EnzymaticDigestion |
EnzymaticDigestion() | EnzymaticDigestion |
enzyme_ | EnzymaticDigestion | protected
filterByMissedCleavages(const String &sequence, std::function< bool(const Int)> filter) const | EnzymaticDigestion |
getEnzymeName() const | EnzymaticDigestion |
getMissedCleavages() const | EnzymaticDigestion |
getSpecificity() const | EnzymaticDigestion |
getSpecificityByName(const String &name) | EnzymaticDigestion | static
isValidProduct(const String &sequence, int pos, int length, bool ignore_missed_cleavages=true) const | EnzymaticDigestion |
isValidProduct_(const String &sequence, int pos, int length, bool ignore_missed_cleavages, bool allow_nterm_protein_cleavage, bool allow_random_asp_pro_cleavage) const | EnzymaticDigestion | protected
missed_cleavages_ | EnzymaticDigestion | protected
NamesOfSpecificity | EnzymaticDigestion | static
NoCleavage | EnzymaticDigestion | static
re_ | EnzymaticDigestion | protected
setEnzyme(const DigestionEnzyme *enzyme) | EnzymaticDigestion | virtual
setMissedCleavages(Size missed_cleavages) | EnzymaticDigestion |
setSpecificity(Specificity spec) | EnzymaticDigestion |
SIZE_OF_SPECIFICITY enum value | EnzymaticDigestion |
SPEC_FULL enum value | EnzymaticDigestion |
SPEC_NONE enum value | EnzymaticDigestion |
SPEC_SEMI enum value | EnzymaticDigestion |
Specificity enum name | EnzymaticDigestion |
specificity_ | EnzymaticDigestion | protected
tokenize_(const String &sequence, int start=0, int end=-1) const | EnzymaticDigestion | protected
UnspecificCleavage | EnzymaticDigestion | static
~EnzymaticDigestion() | EnzymaticDigestion | virtual