| OpenMS 2.5.0

MRMScoring Member List

This is the complete list of members for MRMScoring, including all inherited members.

calcLibraryScore(OpenSwath::IMRMFeature *mrmfeature, const std::vector< TransitionType > &transitions, double &correlation, double &norm_manhattan, double &manhattan, double &dotprod, double &spectral_angle, double &rmsd) | MRMScoring | static
calcMIPrecursorCombinedScore() | MRMScoring |
calcMIPrecursorContrastScore() | MRMScoring |
calcMIPrecursorScore() | MRMScoring |
calcMIScore() | MRMScoring |
calcMIWeightedScore(const std::vector< double > &normalized_library_intensity) | MRMScoring |
calcRTScore(const PeptideType &peptide, double normalized_experimental_rt) | MRMScoring | static
calcSeparateMIContrastScore() | MRMScoring |
calcSeparateSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators) | MRMScoring | static
calcSeparateXcorrContrastCoelutionScore() | MRMScoring |
calcSeparateXcorrContrastShapeScore() | MRMScoring |
calcSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators) | MRMScoring | static
calcXcorrCoelutionScore() | MRMScoring |
calcXcorrCoelutionWeightedScore(const std::vector< double > &normalized_library_intensity) | MRMScoring |
calcXcorrContrastCoelutionScore() | MRMScoring |
calcXcorrContrastShapeScore() | MRMScoring |
calcXcorrPrecursorCoelutionScore() | MRMScoring |
calcXcorrPrecursorCombinedCoelutionScore() | MRMScoring |
calcXcorrPrecursorCombinedShapeScore() | MRMScoring |
calcXcorrPrecursorContrastCoelutionScore() | MRMScoring |
calcXcorrPrecursorContrastShapeScore() | MRMScoring |
calcXcorrPrecursorShapeScore() | MRMScoring |
calcXcorrShapeScore() | MRMScoring |
calcXcorrShapeWeightedScore(const std::vector< double > &normalized_library_intensity) | MRMScoring |
FeatureType typedef | MRMScoring |
getMIContrastMatrix() const | MRMScoring |
getMIMatrix() const | MRMScoring |
getMIPrecursorCombinedMatrix() const | MRMScoring |
getMIPrecursorContrastMatrix() const | MRMScoring |
getXCorrContrastMatrix() const | MRMScoring |
getXCorrMatrix() const | MRMScoring |
getXCorrPrecursorCombinedMatrix() const | MRMScoring |
getXCorrPrecursorContrastMatrix() const | MRMScoring |
initializeMIContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, std::vector< String > native_ids_set1, std::vector< String > native_ids_set2) | MRMScoring |
initializeMIMatrix(OpenSwath::IMRMFeature *mrmfeature, std::vector< String > native_ids) | MRMScoring |
initializeMIPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &precursor_ids, const std::vector< String > &native_ids) | MRMScoring |
initializeMIPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &precursor_ids, const std::vector< String > &native_ids) | MRMScoring |
initializeMIPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, std::vector< String > precursor_ids) | MRMScoring |
initializeXCorrContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &native_ids_set1, const std::vector< String > &native_ids_set2) | MRMScoring |
initializeXCorrMatrix(const std::vector< std::vector< double > > &data) | MRMScoring |
initializeXCorrMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &native_ids) | MRMScoring |
initializeXCorrPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &precursor_ids, const std::vector< String > &native_ids) | MRMScoring |
initializeXCorrPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &precursor_ids, const std::vector< String > &native_ids) | MRMScoring |
initializeXCorrPrecursorContrastMatrix(const std::vector< std::vector< double > > &data_precursor, const std::vector< std::vector< double > > &data_fragments) | MRMScoring |
initializeXCorrPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< String > &precursor_ids) | MRMScoring |
mi_contrast_matrix_ | MRMScoring | private
mi_matrix_ | MRMScoring | private
mi_precursor_combined_matrix_ | MRMScoring | private
mi_precursor_contrast_matrix_ | MRMScoring | private
mi_precursor_matrix_ | MRMScoring | private
PeptideType typedef | MRMScoring |
ProteinType typedef | MRMScoring |
SpectrumType typedef | MRMScoring |
String typedef | MRMScoring |
TransitionType typedef | MRMScoring |
xcorr_contrast_matrix_ | MRMScoring | private
xcorr_matrix_ | MRMScoring | private
xcorr_precursor_combined_matrix_ | MRMScoring | private
xcorr_precursor_contrast_matrix_ | MRMScoring | private
xcorr_precursor_matrix_ | MRMScoring | private
XCorrArrayType typedef | MRMScoring |
XCorrMatrixType typedef | MRMScoring |