| OpenMS 2.5.0

IsotopeWaveletTransform< PeakType > Member List

This is the complete list of members for IsotopeWaveletTransform< PeakType >, including all inherited members.

av_MZ_spacing_ | IsotopeWaveletTransform< PeakType > | protected
Box typedef | IsotopeWaveletTransform< PeakType > |
c_mzs_ | IsotopeWaveletTransform< PeakType > | protected
c_spacings_ | IsotopeWaveletTransform< PeakType > | protected
checkPositionForPlausibility_(const TransSpectrum &candidate, const MSSpectrum &ref, const double seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const double transintens, const double prev_score) | IsotopeWaveletTransform< PeakType > | protected virtual
checkPositionForPlausibility_(const MSSpectrum &candidate, const MSSpectrum &ref, const double seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const double transintens, const double prev_score) | IsotopeWaveletTransform< PeakType > | protected virtual
checkPPMTheoModel_(const MSSpectrum &ref, const double c_mz, const UInt c) | IsotopeWaveletTransform< PeakType > | protected virtual
closed_boxes_ | IsotopeWaveletTransform< PeakType > | protected
clusterSeeds_(const TransSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | protected
clusterSeeds_(const MSSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | protected virtual
computeMinSpacing(const MSSpectrum &c_ref) | IsotopeWaveletTransform< PeakType > | virtual
data_length_ | IsotopeWaveletTransform< PeakType > | protected
end_boxes_ | IsotopeWaveletTransform< PeakType > | protected
extendBox_(const PeakMap &map, const Box &box) | IsotopeWaveletTransform< PeakType > | protected
from_max_to_left_ | IsotopeWaveletTransform< PeakType > | protected
from_max_to_right_ | IsotopeWaveletTransform< PeakType > | protected
front_boxes_ | IsotopeWaveletTransform< PeakType > | protected
getAvIntens_(const TransSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inline protected
getAvIntens_(const MSSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inline protected
getAvMZSpacing_(const MSSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inline protected
getClosedBoxes() | IsotopeWaveletTransform< PeakType > | inline virtual
getLinearInterpolation(const typename MSSpectrum::const_iterator &left_iter, const double mz_pos, const typename MSSpectrum::const_iterator &right_iter) | IsotopeWaveletTransform< PeakType > | inline
getLinearInterpolation(const double mz_a, const double intens_a, const double mz_pos, const double mz_b, const double intens_b) | IsotopeWaveletTransform< PeakType > | inline
getMaxScanSize() const | IsotopeWaveletTransform< PeakType > | inline
getMinSpacing() const | IsotopeWaveletTransform< PeakType > | inline
getPPMs_(const double mass_a, const double mass_b) const | IsotopeWaveletTransform< PeakType > | inline protected
getSdIntens_(const TransSpectrum &scan, const double mean) | IsotopeWaveletTransform< PeakType > | inline protected
getSdIntens_(const MSSpectrum &scan, const double mean) | IsotopeWaveletTransform< PeakType > | inline protected
getSigma() const | IsotopeWaveletTransform< PeakType > | inline
getTransform(MSSpectrum &c_trans, const MSSpectrum &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | virtual
getTransformHighRes(MSSpectrum &c_trans, const MSSpectrum &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | virtual
hr_data_ | IsotopeWaveletTransform< PeakType > | protected
identifyCharge(const MSSpectrum &candidates, const MSSpectrum &ref, const UInt scan_index, const UInt c, const double ampl_cutoff, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | virtual
indices_ | IsotopeWaveletTransform< PeakType > | protected
initializeScan(const MSSpectrum &c_ref, const UInt c=0) | IsotopeWaveletTransform< PeakType > | virtual
intenstype_ | IsotopeWaveletTransform< PeakType > | protected
interpol_xs_ | IsotopeWaveletTransform< PeakType > | protected
interpol_ys_ | IsotopeWaveletTransform< PeakType > | protected
IsotopeWaveletTransform(const double min_mz, const double max_mz, const UInt max_charge, const Size max_scan_size=0, const bool hr_data=false, const String intenstype="ref") | IsotopeWaveletTransform< PeakType > |
IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | protected
mapSeeds2Features(const PeakMap &map, const UInt RT_votes_cutoff) | IsotopeWaveletTransform< PeakType > |
max_charge_ | IsotopeWaveletTransform< PeakType > | protected
max_mz_cutoff_ | IsotopeWaveletTransform< PeakType > | protected
max_num_peaks_per_pattern_ | IsotopeWaveletTransform< PeakType > | protected
max_scan_size_ | IsotopeWaveletTransform< PeakType > | protected
min_spacing_ | IsotopeWaveletTransform< PeakType > | protected
open_boxes_ | IsotopeWaveletTransform< PeakType > | protected
peptideMassRule_(const double c_mass) const | IsotopeWaveletTransform< PeakType > | inline protected
prod_ | IsotopeWaveletTransform< PeakType > | protected
psi_ | IsotopeWaveletTransform< PeakType > | protected
push2Box_(const double mz, const UInt scan, UInt c, const double score, const double intens, const double rt, const UInt MZ_begin, const UInt MZ_end, const double ref_intens) | IsotopeWaveletTransform< PeakType > | protected virtual
push2TmpBox_(const double mz, const UInt scan, UInt charge, const double score, const double intens, const double rt, const UInt MZ_begin, const UInt MZ_end) | IsotopeWaveletTransform< PeakType > | protected virtual
sampleTheCMarrWavelet_(const MSSpectrum &scan, const Int wavelet_length, const Int mz_index, const UInt charge) | IsotopeWaveletTransform< PeakType > | inline protected
scores_ | IsotopeWaveletTransform< PeakType > | protected
scoreThis_(const TransSpectrum &candidate, const UInt peak_cutoff, const double seed_mz, const UInt c, const double ampl_cutoff) | IsotopeWaveletTransform< PeakType > | protected virtual
scoreThis_(const MSSpectrum &candidate, const UInt peak_cutoff, const double seed_mz, const UInt c, const double ampl_cutoff) | IsotopeWaveletTransform< PeakType > | protected virtual
setSigma(const double sigma) | IsotopeWaveletTransform< PeakType > | inline
sigma_ | IsotopeWaveletTransform< PeakType > | protected
tmp_boxes_ | IsotopeWaveletTransform< PeakType > | protected
updateBoxStates(const PeakMap &map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1) | IsotopeWaveletTransform< PeakType > |
xs_ | IsotopeWaveletTransform< PeakType > | protected
zeros_ | IsotopeWaveletTransform< PeakType > | protected
~IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | virtual