| OpenMS 2.5.0

PlainMSDataWritingConsumer Member List

This is the complete list of members for PlainMSDataWritingConsumer, including all inherited members.

ActionMode enum name | XMLHandler |
add_dataprocessing_ | MSDataWritingConsumer | protected
addDataProcessing(DataProcessing d) | MSDataWritingConsumer | virtual
additional_dataprocessing_ | MSDataWritingConsumer | protected
addSpectrumMetaData_(const std::vector< MzMLHandlerHelper::BinaryData > &input_data, const Size n, SpectrumType &spectrum) const | MzMLHandler | protected
asBool_(const String &in) | XMLHandler | inline protected
asDateTime_(String date_string) | XMLHandler | inline protected
asDouble_(const String &in) | XMLHandler | inline protected
asFloat_(const String &in) | XMLHandler | inline protected
asInt_(const String &in) | XMLHandler | inline protected
asInt_(const XMLCh *in) | XMLHandler | inline protected
asUInt_(const String &in) | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
bin_data_ | MzMLHandler | protected
BinaryData typedef | MzMLHandler | protected
cexp_ | MzMLHandler | protected
characters(const XMLCh *const chars, const XMLSize_t length) override | MzMLHandler |
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler |
chrom_count_total_ | MzMLHandler | protected
chromatogram_ | MzMLHandler | protected
chromatogram_count_ | MzMLHandler | protected
chromatogram_data_ | MzMLHandler | protected
ChromatogramPeakType typedef | MzMLHandler | protected
chromatograms_expected_ | MSDataWritingConsumer | protected
chromatograms_offsets_ | MzMLHandler | protected
chromatograms_written_ | MSDataWritingConsumer | protected
ChromatogramType typedef | MSDataWritingConsumer |
consumeChromatogram(ChromatogramType &c) override | MSDataWritingConsumer | virtual
consumer_ | MzMLHandler | protected
consumeSpectrum(SpectrumType &s) override | MSDataWritingConsumer | virtual
current_id_ | MzMLHandler | protected
cv_ | MzMLHandler | protected
cv_terms_ | XMLHandler | protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inline protected
default_array_length_ | MzMLHandler | protected
default_processing_ | MzMLHandler | protected
dps_ | MSDataWritingConsumer | protected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | MzMLHandler |
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inline protected
error(const xercesc::SAXParseException &exception) override | XMLHandler |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
error_message_ | XMLHandler | mutable protected
errorString() | XMLHandler |
exp_ | MzMLHandler | protected
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
file_ | XMLHandler | protected
fillChromatogramData_() | MzMLHandler | protected
getChildWithName_(const String &parent_accession, const String &name) const | MzMLHandler | protected
getCounts(Size &spectra_counts, Size &chromatogram_counts) | MzMLHandler |
getLoadDetail() const override | MzMLHandler | virtual
getNrChromatogramsWritten() | MSDataWritingConsumer | virtual
getNrSpectraWritten() | MSDataWritingConsumer | virtual
getOptions() | MzMLHandler |
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession="") | MzMLHandler | protected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value, const String &unit_accession="") | MzMLHandler | protected
in_spectrum_list_ | MzMLHandler | protected
instruments_ | MzMLHandler | protected
LD_ALLDATA enum value | XMLHandler |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler |
LD_RAWCOUNTS enum value | XMLHandler |
LOAD enum value | XMLHandler |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler |
logger_ | MzMLHandler | protected
mapping_ | MzMLHandler | protected
MapType typedef | MSDataWritingConsumer |
MSDataWritingConsumer(String filename) | MSDataWritingConsumer | explicit
MzMLHandler(MapType &exp, const String &filename, const String &version, const ProgressLogger &logger) | MzMLHandler |
MzMLHandler(const MapType &exp, const String &filename, const String &version, const ProgressLogger &logger) | MzMLHandler |
MzMLHandler(const String &filename, const String &version, const ProgressLogger &logger) | MzMLHandler | protected
ofs_ | MSDataWritingConsumer | protected
open_tags_ | XMLHandler | protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
options_ | MzMLHandler | protected
PeakType typedef | MzMLHandler | protected
PlainMSDataWritingConsumer(String filename) | PlainMSDataWritingConsumer | inline explicit
populateChromatogramsWithData_() | MzMLHandler | protected
populateChromatogramsWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &length, const PeakFileOptions &peak_file_options, ChromatogramType &inp_chromatogram) | MzMLHandler | protected
populateSpectraWithData_() | MzMLHandler | protected
populateSpectraWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &length, const PeakFileOptions &peak_file_options, SpectrumType &spectrum) | MzMLHandler | protected
processChromatogram_(MapType::ChromatogramType &) override | PlainMSDataWritingConsumer | inline private virtual
processing_ | MzMLHandler | protected
processSpectrum_(MapType::SpectrumType &) override | PlainMSDataWritingConsumer | inline private virtual
ref_param_ | MzMLHandler | protected
reset() | XMLHandler |
rt_set_ | MzMLHandler | protected
samples_ | MzMLHandler | protected
scan_count_ | MzMLHandler | protected
scan_count_total_ | MzMLHandler | protected
selected_ion_count_ | MzMLHandler | protected
setExpectedSize(Size expectedSpectra, Size expectedChromatograms) override | MSDataWritingConsumer | virtual
setExperimentalSettings(const ExperimentalSettings &exp) override | MSDataWritingConsumer | virtual
setLoadDetail(const LOADDETAIL d) override | MzMLHandler | virtual
setMSDataConsumer(Interfaces::IMSDataConsumer *consumer) | MzMLHandler |
setOptions(const PeakFileOptions &opt) | MzMLHandler |
settings_ | MSDataWritingConsumer | protected
skip_chromatogram_ | MzMLHandler | protected
skip_spectrum_ | MzMLHandler | protected
sm_ | XMLHandler | protected
software_ | MzMLHandler | protected
source_files_ | MzMLHandler | protected
spec_ | MzMLHandler | protected
spectra_expected_ | MSDataWritingConsumer | protected
spectra_offsets_ | MzMLHandler | protected
spectra_written_ | MSDataWritingConsumer | protected
spectrum_data_ | MzMLHandler | protected
SpectrumType typedef | MSDataWritingConsumer |
started_writing_ | MSDataWritingConsumer | protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | MzMLHandler |
STORE enum value | XMLHandler |
validateCV_(const ControlledVocabulary::CVTerm &c, const String &path, const Internal::MzMLValidator &validator) const | MzMLHandler | protected
validator_ | MSDataWritingConsumer | protected
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
writeBinaryDataArray_(std::ostream &os, const PeakFileOptions &options, std::vector< DataType > &data, bool is32bit, String array_type) | MzMLHandler | protected
writeBinaryFloatDataArray_(std::ostream &os, const PeakFileOptions &pf_options_, const OpenMS::DataArrays::FloatDataArray &array, const Size spec_chrom_idx, const Size array_idx, bool isSpectrum, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeChromatogram_(std::ostream &os, const ChromatogramType &chromatogram, Size chrom_idx, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeContainerData_(std::ostream &os, const PeakFileOptions &pf_options_, const ContainerT &container, String array_type) | MzMLHandler | protected
writeCV_(const ControlledVocabulary::CVTerm &c, const DataValue &metaValue) const | MzMLHandler | protected
writeDataProcessing_(std::ostream &os, const String &id, const std::vector< ConstDataProcessingPtr > &dps, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeHeader_(std::ostream &os, const MapType &exp, std::vector< std::vector< ConstDataProcessingPtr > > &dps, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writePrecursor_(std::ostream &os, const Precursor &precursor, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeProduct_(std::ostream &os, const Product &product, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeSoftware_(std::ostream &os, const String &id, const Software &software, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeSourceFile_(std::ostream &os, const String &id, const SourceFile &software, const Internal::MzMLValidator &validator) | MzMLHandler | protected
writeSpectrum_(std::ostream &os, const SpectrumType &spec, Size spec_idx, const Internal::MzMLValidator &validator, bool renew_native_ids, std::vector< std::vector< ConstDataProcessingPtr > > &dps) | MzMLHandler | protected
writeTo(std::ostream &os) override | MzMLHandler | virtual
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent, const String &path, const Internal::MzMLValidator &validator, const std::set< String > &exclude={}) const | MzMLHandler | protected
OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inline static
writing_chromatograms_ | MSDataWritingConsumer | protected
writing_spectra_ | MSDataWritingConsumer | protected
XMLHandler(const String &filename, const String &version) | XMLHandler |
~IMSDataConsumer() | IMSDataConsumer | inline virtual
~MSDataWritingConsumer() override | MSDataWritingConsumer |
~MzMLHandler() override | MzMLHandler |
~XMLHandler() override | XMLHandler |