| OpenMS 2.5.0

### - a -

- AASequence::ConstIterator : AASequence::Iterator

### - c -

- ConsensusMapNormalizerAlgorithmThreshold : ConsensusMapNormalizerAlgorithmMedian
- ConsensusXMLFile : IdXMLFile
- ConstRefVector : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
- CrossLinksDB : ModificationsDB

### - d -

- DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > : ProteaseDB
- DigestionEnzymeDB< DigestionEnzymeRNA, RNaseDB > : RNaseDB

### - e -

- EmgGradientDescent_friend : EmgGradientDescent

### - f -

- FeatureFinderAlgorithmSHCtrl : SuperHirnParameters
- FeatureXMLFile : IdXMLFile

### - h -

- HashGrid : HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator

### - i -

- IDFilter : IdentificationData
- Internal::ClassTest::isFileSimilar : FuzzyStringComparator
- Internal::ClassTest::testStringSimilar : FuzzyStringComparator
- IsotopeWaveletTransform : IsotopeWaveletTransform< PeakType >::TransSpectrum

### - k -

- KDTree : _Base_iterator

### - l -

- LogStream : LogStreamBuf

### - m -

- MRMFeatureSelector_test : MRMFeatureSelector
- MSPGenericFile_friend : MSPGenericFile

### - n -

- NASequence::ConstIterator : NASequence::Iterator

### - o -

- operator!= : _Iterator< _Val, _Ref, _Ptr > , DataValue
- operator+ : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
- operator- : ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
- operator< : Compomer , DataValue , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
- operator<< : AASequence , AccurateMassSearchResult , Adduct , Compomer , ConnectedComponent , ControlledVocabulary , DataValue , DigestionEnzyme , DigestionEnzymeProtein , Element , EmpiricalFormula , LogConfigHandler , BasicStatistics< RealT > , NASequence , Peak2D , QCBase::Status , RawData , Residue , Ribonucleotide , StreamHandler
- operator== : _Iterator< _Val, _Ref, _Ptr > , Adduct , Compomer , DataValue
- operator> : DataValue
- operator>> : AASequence

### - p -

- PeptideIdentificationVisualizer : MetaDataBrowser
- ProteinIdentificationVisualizer : MetaDataBrowser
- PScore : AScore

### - r -

- ResidueDB : Residue
- RibonucleotideDB : Ribonucleotide

### - s -

- singletonsNeedNoFriends : Factory< FactoryProduct > , SingletonRegistry
- Spectrum3DCanvas : Spectrum3DOpenGLCanvas
- Spectrum3DOpenGLCanvas : Spectrum3DCanvas
- SvmTheoreticalSpectrumGeneratorTrainer : SvmTheoreticalSpectrumGenerator
- swap : ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT > , ConstRefVector< ContainerT >

### - t -

- TestTOPPView : TOPPViewBase
- TOPPBase : File