| OpenMS 2.5.0

PeptideAndProteinQuant Member List

This is the complete list of members for PeptideAndProteinQuant, including all inherited members.

annotateQuantificationsToProteins(const ProteinQuant &protein_quants, ProteinIdentification &proteins, const UInt n_samples) | PeptideAndProteinQuant | static
check_defaults_ | DefaultParamHandler | protected
countPeptides_(std::vector< PeptideIdentification > &peptides) | PeptideAndProteinQuant | private
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getAccession_(const std::set< String > &pep_accessions, std::map< String, String > &accession_to_leader) | PeptideAndProteinQuant | private
getAnnotation_(std::vector< PeptideIdentification > &peptides) | PeptideAndProteinQuant | private
getBest_(const std::map< Int, std::map< Int, SampleAbundances >> &peptide_abundances, std::pair< size_t, size_t > &best) | PeptideAndProteinQuant | inline private
getDefaults() const | DefaultParamHandler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getPeptideResults() | PeptideAndProteinQuant |
getProteinResults() | PeptideAndProteinQuant |
getStatistics() | PeptideAndProteinQuant |
getSubsections() const | DefaultParamHandler |
normalizePeptides_() | PeptideAndProteinQuant | private
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
orderBest_(const std::map< T, SampleAbundances > &abundances, std::vector< T > &result) | PeptideAndProteinQuant | inline private
param_ | DefaultParamHandler | protected
pep_quant_ | PeptideAndProteinQuant | private
PeptideAndProteinQuant() | PeptideAndProteinQuant |
PeptideQuant typedef | PeptideAndProteinQuant |
prot_quant_ | PeptideAndProteinQuant | private
ProteinQuant typedef | PeptideAndProteinQuant |
quantifyFeature_(const FeatureHandle &feature, size_t fraction, size_t sample, const PeptideHit &hit) | PeptideAndProteinQuant | private
quantifyPeptides(const std::vector< PeptideIdentification > &peptides=std::vector< PeptideIdentification >()) | PeptideAndProteinQuant |
quantifyProteins(const ProteinIdentification &proteins=ProteinIdentification()) | PeptideAndProteinQuant |
readQuantData(FeatureMap &features, const ExperimentalDesign &ed) | PeptideAndProteinQuant |
readQuantData(ConsensusMap &consensus, const ExperimentalDesign &ed) | PeptideAndProteinQuant |
readQuantData(std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const ExperimentalDesign &ed) | PeptideAndProteinQuant |
SampleAbundances typedef | PeptideAndProteinQuant |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
stats_ | PeptideAndProteinQuant | private
subsections_ | DefaultParamHandler | protected
updateMembers_() override | PeptideAndProteinQuant | private virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~PeptideAndProteinQuant() override | PeptideAndProteinQuant | inline