| OpenMS 2.5.0

Classes | Namespaces
ProteinResolver.h File Reference
`#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>`
`#include <OpenMS/KERNEL/ConsensusMap.h>`
`#include <OpenMS/KERNEL/FeatureMap.h>`
`#include <OpenMS/FORMAT/FASTAFile.h>`
`#include <OpenMS/METADATA/PeptideIdentification.h>`
`#include <OpenMS/METADATA/ProteinIdentification.h>`

Go to the source code of this file.

## Classes

class | ProteinResolver
| Helper class for peptide and protein quantification based on feature data annotated with IDs. More...
struct | ProteinResolver::ProteinEntry
| represents a protein from FASTA file More...
struct | ProteinResolver::PeptideEntry
| represents a peptide. First in silico. If experimental is set to true it is MS/MS derived. More...
struct | ProteinResolver::MSDGroup
| representation of an msd group. Contains peptides, proteins and a pointer to its ISD group More...
struct | ProteinResolver::ISDGroup
struct | ProteinResolver::ResolverResult

## Namespaces

| OpenMS
| Main OpenMS namespace.

## Class Documentation

## ◆ OpenMS::ProteinResolver::PeptideEntry

struct OpenMS::ProteinResolver::PeptideEntry

represents a peptide. First in silico. If experimental is set to true it is MS/MS derived.

Class Members
bool | experimental |
Size | index |
float | intensity |
Size | isd_group |
Size | msd_group |
String | origin |
Size | peptide_hit |
Size | peptide_identification |
list< ProteinEntry * > | proteins |
String | sequence |
bool | traversed |

## ◆ OpenMS::ProteinResolver::MSDGroup

struct OpenMS::ProteinResolver::MSDGroup

representation of an msd group. Contains peptides, proteins and a pointer to its ISD group

Class Members
Size | index |
float | intensity | intensity of the MSD Group. Defined as the median of the peptide intensities.
ISDGroup * | isd_group |
Size | number_of_decoy |
Size | number_of_target |
Size | number_of_target_plus_decoy |
list< PeptideEntry * > | peptides |
list< ProteinEntry * > | proteins |

## ◆ OpenMS::ProteinResolver::ISDGroup

struct OpenMS::ProteinResolver::ISDGroup

Class Members
Size | index |
list< Size > | msd_groups |
list< PeptideEntry * > | peptides |
list< ProteinEntry * > | proteins |