| OpenMS 2.5.0

Public Member Functions | Static Public Attributes | Protected Attributes | Private Attributes | List of all members
LCElutionPeak Class Reference

`#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.h>`

## Public Member Functions

| ~LCElutionPeak ()
| LCElutionPeak ()
| LCElutionPeak (MZ_series_ITERATOR, double)
| LCElutionPeak (const LCElutionPeak &)
| LCElutionPeak (const LCElutionPeak *)
void | analyzeLCElutionPeak ()
void | setSNIntensityThreshold ()
void | computeLCElutionPeakParameters ()
double | compute_delta_area (double, double, double, double)
void | remove_background_peak ()
void | compute_CHRG ()
void | defineLCElutionPeakParametersFromMSPeak ()
void | createConsensIsotopPattern ()
void | print_profile (std::ofstream *)
MSPeak * | find_true_peak (float)
void | show_info ()
LCElutionPeak & | operator= (const LCElutionPeak &)
LCElutionPeak & | operator<= (const LCElutionPeak &)
LCElutionPeak & | operator>= (const LCElutionPeak &)
LCElutionPeak & | operator< (const LCElutionPeak &)
LCElutionPeak & | operator> (const LCElutionPeak &)
void | setElutionPeakExtraInfo (std::string in)
std::string | getElutionPeakExtraInfo ()
SIGNAL_iterator | get_signal_list_start ()
SIGNAL_iterator | get_signal_list_end ()
void | set_apex_retention_time (double in)
void | update_CHRGMAP (MSPeak *in)
int | get_scan_apex ()
double | get_apex_intensity ()
double | get_apex_retention_time ()
double | get_apex_MZ ()
float | get_intensity (int in)
double | get_MZ (int)
double | get_total_peak_area ()
int | get_start_scan ()
int | get_end_scan ()
void | set_start_retention_time (double in)
double | get_start_retention_time ()
void | set_end_retention_time (double in)
double | get_end_retention_time ()
int | get_nb_ms_peaks ()
int | get_charge_state ()
double | getSignalToNoise ()
double | getSignalToNoiseBackground ()

## Static Public Attributes

static double | DEBUG_MASS_START
static double | DEBUG_MASS_END

## Protected Attributes

double | fMonoMass
double | fVolume
int | fCharge
int | fScanNumberStart
int | fScanNumberApex
int | fScanNumberEnd
double | fapex_intensity
double | fRT
double | fStartTR
double | fEndTR
double | fpeak_area
double | fSignalToNoise
double | fSNIntensityThreshold
MSPeak * | APEX
std::string | elutionPeakExtraInfo
std::multimap< int, MSPeak > | intens_signals
std::multimap< int, int > | CHRG_MAP

## Private Attributes

ConsensusIsotopePattern * | isotopePattern
int | fNrIsotopes
double | f_observed_Mass
double | fIsotopMass

## Constructor & Destructor Documentation

## ◆ ~LCElutionPeak()

~LCElutionPeak | ( |  | ) |

## ◆ LCElutionPeak() [1/4]

LCElutionPeak | ( |  | ) |

## ◆ LCElutionPeak() [2/4]

LCElutionPeak | ( | MZ_series_ITERATOR | ,
|  | double |
| ) |  |

## ◆ LCElutionPeak() [3/4]

LCElutionPeak | ( | const LCElutionPeak & |  | ) |

## ◆ LCElutionPeak() [4/4]

LCElutionPeak | ( | const LCElutionPeak * |  | ) |

## Member Function Documentation

## ◆ analyzeLCElutionPeak()

void analyzeLCElutionPeak | ( |  | ) |

## ◆ compute_CHRG()

void compute_CHRG | ( |  | ) |

## ◆ compute_delta_area()

double compute_delta_area | ( | double | ,
|  | double | ,
|  | double | ,
|  | double |
| ) |  |

## ◆ computeLCElutionPeakParameters()

void computeLCElutionPeakParameters | ( |  | ) |

## ◆ createConsensIsotopPattern()

void createConsensIsotopPattern | ( |  | ) |

## ◆ defineLCElutionPeakParametersFromMSPeak()

void defineLCElutionPeakParametersFromMSPeak | ( |  | ) |

## ◆ find_true_peak()

MSPeak* find_true_peak | ( | float |  | ) |

## ◆ get_apex_intensity()

double get_apex_intensity | ( |  | ) |

## ◆ get_apex_MZ()

double get_apex_MZ | ( |  | ) |

## ◆ get_apex_retention_time()

double get_apex_retention_time | ( |  | ) |

## ◆ get_charge_state()

int get_charge_state | ( |  | ) |

## ◆ get_end_retention_time()

double get_end_retention_time | ( |  | ) |

## ◆ get_end_scan()

int get_end_scan | ( |  | ) |

## ◆ get_intensity()

float get_intensity | ( | int | in | ) |

## ◆ get_MZ()

double get_MZ | ( | int |  | ) |

## ◆ get_nb_ms_peaks()

int get_nb_ms_peaks | ( |  | ) |

## ◆ get_scan_apex()

int get_scan_apex | ( |  | ) |

## ◆ get_signal_list_end()

SIGNAL_iterator get_signal_list_end | ( |  | ) |

## ◆ get_signal_list_start()

SIGNAL_iterator get_signal_list_start | ( |  | ) |

## ◆ get_start_retention_time()

double get_start_retention_time | ( |  | ) |

## ◆ get_start_scan()

int get_start_scan | ( |  | ) |

## ◆ get_total_peak_area()

double get_total_peak_area | ( |  | ) |

## ◆ getElutionPeakExtraInfo()

std::string getElutionPeakExtraInfo | ( |  | ) |

## ◆ getSignalToNoise()

double getSignalToNoise | ( |  | ) |

## ◆ getSignalToNoiseBackground()

double getSignalToNoiseBackground | ( |  | ) |

## ◆ operator<()

LCElutionPeak& operator< | ( | const LCElutionPeak & |  | ) |

## ◆ operator<=()

LCElutionPeak& operator<= | ( | const LCElutionPeak & |  | ) |

## ◆ operator=()

LCElutionPeak& operator= | ( | const LCElutionPeak & |  | ) |

## ◆ operator>()

LCElutionPeak& operator> | ( | const LCElutionPeak & |  | ) |

## ◆ operator>=()

LCElutionPeak& operator>= | ( | const LCElutionPeak & |  | ) |

## ◆ print_profile()

void print_profile | ( | std::ofstream * |  | ) |

## ◆ remove_background_peak()

void remove_background_peak | ( |  | ) |

## ◆ set_apex_retention_time()

void set_apex_retention_time | ( | double | in | ) |

## ◆ set_end_retention_time()

void set_end_retention_time | ( | double | in | ) |

## ◆ set_start_retention_time()

void set_start_retention_time | ( | double | in | ) |

## ◆ setElutionPeakExtraInfo()

void setElutionPeakExtraInfo | ( | std::string | in | ) |

## ◆ setSNIntensityThreshold()

void setSNIntensityThreshold | ( |  | ) |

## ◆ show_info()

void show_info | ( |  | ) |

## ◆ update_CHRGMAP()

void update_CHRGMAP | ( | MSPeak * | in | ) |

## Member Data Documentation

## ◆ APEX

MSPeak* APEX

protected

## ◆ CHRG_MAP

std::multimap<int, int> CHRG_MAP

protected

## ◆ DEBUG_MASS_END

double DEBUG_MASS_END

static

## ◆ DEBUG_MASS_START

double DEBUG_MASS_START

static

## ◆ elutionPeakExtraInfo

std::string elutionPeakExtraInfo

protected

## ◆ f_observed_Mass

double f_observed_Mass

private

## ◆ fapex_intensity

double fapex_intensity

protected

## ◆ fCharge

int fCharge

protected

## ◆ fEndTR

double fEndTR

protected

## ◆ fIsotopMass

double fIsotopMass

private

## ◆ fMonoMass

double fMonoMass

protected

## ◆ fNrIsotopes

int fNrIsotopes

private

## ◆ fpeak_area

double fpeak_area

protected

## ◆ fRT

double fRT

protected

## ◆ fScanNumberApex

int fScanNumberApex

protected

## ◆ fScanNumberEnd

int fScanNumberEnd

protected

## ◆ fScanNumberStart

int fScanNumberStart

protected

## ◆ fSignalToNoise

double fSignalToNoise

protected

## ◆ fSNIntensityThreshold

double fSNIntensityThreshold

protected

## ◆ fStartTR

double fStartTR

protected

## ◆ fVolume

double fVolume

protected

## ◆ intens_signals

std::multimap<int, MSPeak> intens_signals

protected

## ◆ isotopePattern

ConsensusIsotopePattern* isotopePattern

private