| OpenMS 2.5.0

INIUpdater

Update INI and TOPPAS files from previous versions of OpenMS/TOPP

This tool can update old INI files and make them

- compatible to new versions of OpenMS
- show new parameters introduced with a new OpenMS version
- delete old parameters which no longer have any effect

The new INI files can be created in-place (with -i option), which will overwrite the existing file, but create a backup copy with [filename]_[version].ini, e.g.

INIUpdater -in FileFilter.ini -i

will create a file `FileFilter_1.8.ini` if the old ini version was 1.8.

No backup will be created if -out is used, as the original files are not touched (unless you name them the same).

The command line parameters of this tool are:

    INIUpdater -- Update INI and TOPPAS files to new OpenMS version.

    Full documentation: http://www.openms.de/documentation/UTILS_INIUpdater.html

    Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

    To cite OpenMS:

      Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

    Usage:

      INIUpdater <options>

    Options (mandatory options marked with '*'):

      -in <files>*       INI/TOPPAS files that need updating. (valid formats: 'ini', 'toppas')

      -i                 In-place: Override given INI/TOPPAS files with new content (not compatible with -out)

      -out <files>       Optional list of output files (not compatible with -i). (valid formats: 'ini', 'toppas')

    Common UTIL options:

      -ini <file>        Use the given TOPP INI file

      -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')

      -write_ini <file>  Writes the default configuration file

      --help             Shows options

      --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+INIUpdater Update INI and TOPPAS files to new OpenMS version.
version 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1 Instance '1' section for 'INIUpdater'
in[] INI/TOPPAS files that need updating.input file*.ini,*.toppas
i false in-place: Override given INI/TOPPAS files with new content (not compatible with -out)true,false
out[] Optional list of output files (not compatible with -i).output file*.ini,*.toppas
log Name of log file (created only when specified)
debug 0 Sets the debug level
threads 1 Sets the number of threads allowed to be used by the TOPP tool
no_progress false Disables progress logging to command line true,false
force false Overwrite tool specific checks.true,false
test false Enables the test mode (needed for internal use only)true,false