| OpenMS 2.5.0

Classes | Namespaces
AScore.h File Reference
`#include <OpenMS/CONCEPT/Types.h>`
`#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>`
`#include <OpenMS/DATASTRUCTURES/String.h>`
`#include <OpenMS/KERNEL/StandardTypes.h>`
`#include <OpenMS/KERNEL/MSSpectrum.h>`
`#include <OpenMS/ANALYSIS/RNPXL/PScore.h>`
`#include <limits>`
`#include <vector>`

Go to the source code of this file.

## Classes

struct | ProbablePhosphoSites
class | AScore
| Implementation of the Ascore For a given peptide sequence and its MS/MS spectrum it identifies the most probable phosphorylation-site(s). For each phosphorylation site a probability score is calculated. The algorithm is implemented according to Beausoleil et al. (Nat. Biotechnol. 2006). More...

## Namespaces

| OpenMS
| Main OpenMS namespace.

## Class Documentation

## ◆ OpenMS::ProbablePhosphoSites

struct OpenMS::ProbablePhosphoSites

Class Members
Size | AScore |
Size | first |
Size | peak_depth | filtering level that gave rise to maximum discriminatory score
Size | second |
Size | seq_1 | index of best permutation with site in phosphorylated state
Size | seq_2 | index of permutation with site in unphosphorylated state