| OpenMS 2.5.0

### - t -

- tabAt_() : EnhancedTabBar , TOPPASTabBar
- tableExists() : SqliteConnector
- tag() : DocumentIDTagger
- tag_peaks_with_spectrum_ID() : LCMS
- Tagger() : Tagger
- Tagging() : Tagging
- TaggingVisualizer() : TaggingVisualizer
- TargetedExperiment() : TargetedExperiment
- targetedMatching() : TargetedSpectraExtractor
- TargetedSpectraExtractor() : TargetedSpectraExtractor
- TemporaryFiles_() : File::TemporaryFiles_
- terminate() : GlobalExceptionHandler
- terminateCurrentPipeline() : TOPPASScene
- TextFile() : TextFile
- tgtIdx() : MatchedIterator< CONT_T, TRAIT, CONST_T >
- TheoreticalSpectrumGenerationDialog() : TheoreticalSpectrumGenerationDialog
- TheoreticalSpectrumGenerator() : TheoreticalSpectrumGenerator
- TheoreticalSpectrumGeneratorXLMS() : TheoreticalSpectrumGeneratorXLMS
- ThresholdMower() : ThresholdMower
- TIC() : TIC
- TICFilter() : TICFilter
- tie() : PeptideIndexing::PeptideProteinMatchInformation
- tileHorizontal() : TOPPViewBase
- tileVertical() : TOPPViewBase
- timedOut() : MascotRemoteQuery
- timeMessure() : Spectrum3DOpenGLCanvas
- timeOut() : NetworkGetRequest
- timerTriggered_() : FileWatcher
- TMTElevenPlexQuantitationMethod() : TMTElevenPlexQuantitationMethod
- TMTSixPlexQuantitationMethod() : TMTSixPlexQuantitationMethod
- TMTSixteenPlexQuantitationMethod() : TMTSixteenPlexQuantitationMethod
- TMTTenPlexQuantitationMethod() : TMTTenPlexQuantitationMethod
- toBool() : DataValue
- toBracketString() : AASequence
- toCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabNullAbleInterface , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
- toChar() : DataValue
- toCSVString() : QcMLFile::Attachment
- today() : Date
- toDouble() : String , StringUtils
- toDoubleList() : DataValue
- toExpandedString() : MassDecomposition
- TOFCalibration() : TOFCalibration
- toFloat() : String , StringUtils
- toggleAdvancedMode() : ParamEditor
- toggleAxisLegends() : TOPPViewBase
- toggleBreakpoint() : TOPPASToolVertex
- toggleGridLines() : TOPPViewBase
- toggleInterestingMZs() : TOPPViewBase
- toggleMirrorView() : Spectrum1DWidget
- toggleProjections() : Spectrum2DCanvas , Spectrum2DWidget , TOPPViewBase
- toInt() : String , StringUtils
- toIntList() : DataValue
- tokenize_() : EnzymaticDigestion
- toLower() : String , StringListUtils , StringUtils
- toMap() : EmpiricalFormula
- toNative_() : StringManager
- toolCrashed() : TOPPASBase , TOPPASToolVertex
- toolCrashedSlot() : TOPPASToolVertex
- ToolDescription() : ToolDescription
- ToolDescriptionFile() : ToolDescriptionFile
- ToolDescriptionHandler() : ToolDescriptionHandler
- ToolDescriptionInternal() : ToolDescriptionInternal
- toolDroppedOnWidget() : TOPPASWidget
- toolFailed() : TOPPASBase , TOPPASToolVertex
- toolFailedSlot() : TOPPASToolVertex
- toolFinished() : TOPPASBase , TOPPASToolVertex
- toolFinishedSlot() : TOPPASToolVertex
- toolName_() : TOPPBase
- toolnameWithWhitespacesForFancyWordWrapping_() : TOPPASToolVertex
- toolScheduledSlot() : TOPPASToolVertex
- ToolsDialog() : ToolsDialog
- toolStarted() : TOPPASBase , TOPPASToolVertex
- toolStartedSlot() : TOPPASToolVertex
- topoSort() : TOPPASScene
- TOPPASBase() : TOPPASBase
- TOPPASEdge() : TOPPASEdge
- toppasFileDownloaded_() : TOPPASBase
- TOPPASFilenames() : TOPPASVertex::TOPPASFilenames
- TOPPASInputFileDialog() : TOPPASInputFileDialog
- TOPPASInputFileListVertex() : TOPPASInputFileListVertex
- TOPPASInputFilesDialog() : TOPPASInputFilesDialog
- TOPPASIOMappingDialog() : TOPPASIOMappingDialog
- TOPPASLogWindow() : TOPPASLogWindow
- TOPPASMergerVertex() : TOPPASMergerVertex
- TOPPASOutputFileListVertex() : TOPPASOutputFileListVertex
- TOPPASOutputFilesDialog() : TOPPASOutputFilesDialog
- TOPPASreadyRead() : TOPPASBase
- TOPPASResource() : TOPPASResource
- TOPPASResources() : TOPPASResources
- TOPPASScene() : TOPPASScene
- TOPPASSplitterVertex() : TOPPASSplitterVertex
- TOPPASTabBar() : TOPPASTabBar
- TOPPASToolConfigDialog() : TOPPASToolConfigDialog
- TOPPASToolVertex() : TOPPASToolVertex
- TOPPASTreeView() : TOPPASTreeView
- TOPPASVertex() : TOPPASVertex
- TOPPASVertexNameDialog() : TOPPASVertexNameDialog
- TOPPASWidget() : TOPPASWidget
- TOPPBase() : TOPPBase
- TOPPGNPSExport() : TOPPGNPSExport
- TOPPOpenSwathBase() : TOPPOpenSwathBase
- toppOutputReady() : TOPPASToolVertex
- TOPPProcess() : TOPPASScene::TOPPProcess
- TOPPViewBase() : TOPPViewBase
- TOPPViewIdentificationViewBehavior() : TOPPViewIdentificationViewBehavior
- TOPPViewOpenDialog() : TOPPViewOpenDialog
- TOPPViewPrefDialog() : TOPPViewPrefDialog
- TOPPViewSpectraViewBehavior() : TOPPViewSpectraViewBehavior
- toQString() : DataValue , String , StringUtils
- toString() : AASequence , Citation , DataFilters::DataFilter , DataValue , EmpiricalFormula , MassDecomposition , RANSACParam , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , MultiGradient , MZTrafoModel , NASequence , StopWatch , TOPPASEdge
- toStringList() : DataValue
- totalMatchedCurrent() : XQuestScores
- toUniModString() : AASequence
- toUnmodifiedString() : AASequence
- toUpper() : String , StringListUtils , StringUtils
- toXMLString() : ControlledVocabulary::CVTerm , QcMLFile::Attachment , QcMLFile::QualityParameter
- TraceFitter() : TraceFitter
- TraceInfo() : Param::ParamIterator::TraceInfo
- trackNoise() : FIAMSDataProcessor
- train() : HiddenMarkovModel , MZTrafoModel , SVMWrapper
- trainModel() : SvmTheoreticalSpectrumGeneratorTrainer
- trainSecondaryTypes_() : SvmTheoreticalSpectrumGeneratorTrainer
- TraMLFile() : TraMLFile
- TraMLHandler() : TraMLHandler
- TraMLProduct() : TraMLProduct
- TraMLValidator() : TraMLValidator
- transferIDsBetweenSameFraction_() : UTILProteomicsLFQ
- transferSubelements() : FeatureGroupingAlgorithm
- transform() : ContinuousWaveletTransformNumIntegration , MapAlignmentAlgorithmKD , MzMLFile , MzXMLFile , SpectraSTSimilarityScore , SqMassFile
- transform_() : IsotopeDistribution , UTILProteomicsLFQ
- Transformation_() : IDDecoyProbability::Transformation_
- TransformationDescription() : TransformationDescription
- TransformationModel() : TransformationModel
- TransformationModelBSpline() : TransformationModelBSpline
- TransformationModelInterpolated() : TransformationModelInterpolated
- TransformationModelLinear() : TransformationModelLinear
- TransformationModelLowess() : TransformationModelLowess
- TransformationXMLFile() : TransformationXMLFile
- transformFirstPass_() : MzMLFile , MzXMLFile
- transformPoint_() : Spectrum3DOpenGLCanvas
- transformRetentionTimes() : MapAlignmentTransformer
- transformScore_() : PosteriorErrorProbabilityModel
- TransitionGroupOpenMS() : TransitionGroupOpenMS< SpectrumT, TransitionT >
- TransitionPQPFile() : TransitionPQPFile
- TransitionTSVFile() : TransitionTSVFile
- translateBackward_() : Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- translateForward_() : Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- translateIsotopeMatrix() : ItraqConstants
- translateLeft_() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- translateRight_() : Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
- translateVisibleArea_() : Spectrum2DCanvas
- TransSpectrum() : IsotopeWaveletTransform< PeakType >::TransSpectrum
- trapezoidal_area() : FalseDiscoveryRate , ROCCurve
- trapezoidal_area_xEqy() : FalseDiscoveryRate
- traversePeptide_() : ProteinResolver
- traverseProtein_() : ProteinResolver
- treeGuidedAlignment() : MapAlignmentAlgorithmTreeGuided
- treeSize() : KDTreeFeatureMaps
- tricube_() : LowessSmoothing
- trim() : String , StringUtils
- trimIntensities() : IsotopeDistribution
- trimLeft() : IsotopeDistribution
- trimOpenMSfileURI() : MzIdentMLHandler
- trimRight() : IsotopeDistribution
- trimText_() : TOPPASLogWindow
- tryGnuplot() : PosteriorErrorProbabilityModel
- TSVToTargetedExperiment_() : TransitionTSVFile
- TwoDOptFunctor() : TwoDOptimization::TwoDOptFunctor
- TwoDOptimization() : TwoDOptimization
- typeToMZML() : FileTypes
- typeToName() : FileTypes