| OpenMS 2.5.0

### - i -

- i : Base64::Reinterpreter32_ , Base64::Reinterpreter64_ , IsotopeWavelet::fi_
- id : ChromatogramExtractorAlgorithm::ExtractionCoordinates , ControlledVocabulary::CVTerm , ChromatogramMeta , SpectrumMeta , IsobaricQuantitationMethod::IsobaricChannelInformation , ItraqConstants::ChannelInfo
- ID : MS2Feature , MS2Info
- id : QcMLFile::Attachment , QcMLFile::QualityParameter , Contact , CV , Instrument , PeptideCompound , Protein , Publication , LightCompound , LightProtein , OSChromatogramMeta , OSSpectrumMeta , Peptide , Protein
- id_ : Compomer , DocumentIdentifier , Identification , IdentificationHit , IDMergerAlgorithm , IdXMLFile , MzIdentMLHandler , PeptideIdentification , ProteinIdentification , ResidueModification , SpectrumIdentification
- id_count : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
- id_data_ : MascotXMLHandler
- id_format : MzTabMSRunMetaData
- id_identifier_ : ConsensusXMLFile , FeatureXMLFile
- idec : MzIdentMLDOMHandler::PeptideEvidence
- identification_ : SpectrumSettings
- identification_date_ : ProteinIdentificationVisualizer
- identification_rate : Ms2IdentificationRate::IdentificationRateData
- identification_threshold_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
- identifications : CsiFingerIdMzTabWriter::CsiAdapterRun , SiriusMzTabWriter::SiriusAdapterRun
- identificationview_behavior_ : TOPPViewBase
- identified : IDMapper::SpectraIdentificationState
- identified_compound_lookup_ : IdentificationData
- identified_compounds_ : IdentificationData
- identified_molecule_ref : MoleculeQueryMatch
- identified_oligo_lookup_ : IdentificationData
- identified_oligos_ : IdentificationData
- identified_peptide_lookup_ : IdentificationData
- identified_peptides_ : IdentificationData
- identifier : FASTAFile::FASTAEntry , IdentifiedCompound , MzTabSmallMoleculeSectionRow , ProteinResolver::ResolverResult
- identifier_ : Acquisition , CVMappingRule , CVReference , DocumentIdentifierVisualizer , MascotXMLHandler , PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
- identifier_id_ : ConsensusXMLFile , FeatureXMLFile
- identifying_transition : TransitionTSVFile::TSVTransition , LightTransition
- IDINITIALUNTITLED : TOPPASBase
- ids : FeatureFinderIdentificationAlgorithm::RTRegion
- ids_ : SpectrumLookup
- idsToRemove : MS1FeatureMerger
- idx_ : KDTreeFeatureNode
- ifs_ : CachedmzML
- ignore_adduct_ : FeatureDistance
- ignore_charge_ : FeatureDistance , IDMapper
- ignore_missed_cleavages_ : IDFilter::DigestionFilter
- ignore_update : SpectraIdentificationViewWidget
- IL_equivalent_ : PeptideIndexing
- ILG : IsoSpecTotalProbGeneratorWrapper , IsoSpecTotalProbWrapper
- im : RawMSSignalSimulation::ContaminantInfo
- im_correction_function_ : SwathMapMassCorrection
- im_delta_score : OpenSwath_Scores
- im_drift : OpenSwath_Scores
- im_drift_extra_pcnt_ : OpenSwathScoring
- im_drift_weighted : OpenSwath_Scores
- im_extra_drift_ : MRMFeatureFinderScoring
- im_extraction_window : ChromExtractParams
- im_extraction_window_ : SwathMapMassCorrection
- im_ms1_contrast_coelution : OpenSwath_Scores
- im_ms1_contrast_shape : OpenSwath_Scores
- im_ms1_delta_score : OpenSwath_Scores
- im_ms1_sum_contrast_coelution : OpenSwath_Scores
- im_ms1_sum_contrast_shape : OpenSwath_Scores
- IM_MS_AXIS_TITLE : SpectrumWidget
- IM_ONEKZERO_AXIS_TITLE : SpectrumWidget
- im_xcorr_coelution_score : OpenSwath_Scores
- im_xcorr_shape_score : OpenSwath_Scores
- in_description_ : FeatureXMLFile
- in_edges_ : TOPPASVertex
- in_ini_section_ : ToolDescriptionHandler
- in_spectrum_list_ : MzMLHandler
- inchi : CsiFingerIdMzTabWriter::CsiAdapterHit , IdentifiedCompound
- inchi_key : MzTabSmallMoleculeSectionRow
- inchi_string_ : SpectralMatch
- inchikey2D : CsiFingerIdMzTabWriter::CsiAdapterHit
- include_targets_ : TargetedExperiment
- incomplete_line_ : LogStreamBuf
- incorporations : SIPPeptide
- incorrectly_assigned_fit_gumbel_param_ : PosteriorErrorProbabilityModel
- incorrectly_assigned_fit_param_ : PosteriorErrorProbabilityModel
- ind_apex_intensity : OpenSwath_Ind_Scores
- ind_area_intensity : OpenSwath_Ind_Scores
- ind_intensity_ratio : OpenSwath_Ind_Scores
- ind_intensity_score : OpenSwath_Ind_Scores
- ind_isotope_correlation : OpenSwath_Ind_Scores
- ind_isotope_overlap : OpenSwath_Ind_Scores
- ind_log_intensity : OpenSwath_Ind_Scores
- ind_log_sn_score : OpenSwath_Ind_Scores
- ind_massdev_score : OpenSwath_Ind_Scores
- ind_mi_ratio : OpenSwath_Ind_Scores
- ind_mi_score : OpenSwath_Ind_Scores
- ind_num_transitions : OpenSwath_Ind_Scores
- ind_total_area_intensity : OpenSwath_Ind_Scores
- ind_total_mi : OpenSwath_Ind_Scores
- ind_transition_names : OpenSwath_Ind_Scores
- ind_xcorr_coelution_score : OpenSwath_Ind_Scores
- ind_xcorr_shape_score : OpenSwath_Ind_Scores
- index : DeNovoIonScoring::IonScore , ChromatogramMeta , SpectrumMeta , PeakCandidate , ProteinResolver::ISDGroup , ProteinResolver::MSDGroup , ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry , OSChromatogramMeta , OSSpectrumMeta
- index_ : FeatureFinderDefs::NoSuccessor , FidHandler
- index_offset_ : IndexedMzMLHandler
- index_to_description_ : MetaInfoRegistry
- index_to_name_ : MetaInfoRegistry
- index_to_unit_ : MetaInfoRegistry
- index_to_value_ : MetaInfo
- indexed_mzml_file_ : OnDiscMSExperiment
- indexed_schema_location_ : MzMLFile
- indices_ : IsotopeWaveletTransform< PeakType >
- indis : ProteinResolver::ProteinEntry
- indist_prot_grp_to_pep_ : PeptideProteinResolution
- indistinguishable_proteins_ : ProteinIdentification
- individual_intensities_ : AccurateMassSearchResult
- inf_ : SVOutStream
- infile_ : FASTAFile
- infinity : FeatureDistance
- info_ : SpectrumCheapDPCorr
- info_streams_ : LogConfigHandler
- infty_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
- ini_file_ : ToolsDialog
- ini_location_ : TOPPBase
- init_param_ : GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , GumbelMaxLikelihoodFitter
- init_prob_ : HiddenMarkovModel
- init_size_ : DistanceMatrix< Value >
- initializedMaps_ : SvmTheoreticalSpectrumGenerator
- initialTrTolerance_ : SuperHirnParameters
- initIsotopeDist_ : SuperHirnParameters
- inlet_type_ : IonSource , IonSourceVisualizer
- input_1_name_ : FuzzyStringComparator
- input_2_name_ : FuzzyStringComparator
- input_combo_ : ToolsDialog
- input_file_opt : DataQuery
- input_file_refs : DataProcessingStep
- input_filename_ : OpenSwathOSWWriter , OpenSwathTSVWriter , XTandemInfile
- input_files_ : IdentificationData
- input_line_1_ : FuzzyStringComparator
- input_line_2_ : FuzzyStringComparator
- input_type : ProteinResolver::ResolverResult
- inside_ : LinearInterpolation< Key, Value >
- inside_0_ : BilinearInterpolation< Key, Value >
- inside_1_ : BilinearInterpolation< Key, Value >
- instance_ : LogConfigHandler , SuperHirnParameters , UniqueIdGenerator
- instance_number_ : TOPPBase
- instance_ptr_ : Factory< FactoryProduct >
- institution_ : ContactPerson , ContactPersonVisualizer
- instrument : MzTabMetaData
- instrument_ : ExperimentalSettings , HPLC , InspectInfile , MascotInfile
- instrument_ref : Configuration
- instrument_settings_ : ChromatogramSettings , SpectrumSettings
- instruments_ : MzMLHandler , TargetedExperiment
- instrumentsettings_polarity_ : InstrumentSettingsVisualizer
- instrumentsettings_scan_mode_ : InstrumentSettingsVisualizer
- int_ : PrecursorVisualizer
- int_32_bit_ : PeakFileOptions
- int_coef : ConfidenceScoring::GLM_
- int_max : PeakPickerMaxima::PeakCandidate
- int_range_ : RangeManager< D >
- int_scale_ : Spectrum3DOpenGLCanvas
- int_sum : OPXLDataStructs::CrossLinkSpectrumMatch
- integer_data_arrays_ : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
- integrated_intensities_ : PeakPickerMRM
- integrated_intensity : PeakCandidate
- integration_type_ : PeakIntegrator
- INTEGRATION_TYPE_INTENSITYSUM : PeakIntegrator
- INTEGRATION_TYPE_SIMPSON : PeakIntegrator
- INTEGRATION_TYPE_TRAPEZOID : PeakIntegrator
- intens : FeatureFinderAlgorithmIsotopeWavelet::BoxElement , IsotopeWaveletTransform< PeakType >::BoxElement
- intens_signals : LCElutionPeak
- intensIsotopesStDev_ : ConsensusIsotopePattern
- intensity : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , FeatureFinderAlgorithmPickedHelperStructs::Seed , FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern , RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ , MS1Signal
- INTENSITY : MSPeak
- intensity : OpenSwath_Scores , PeptideHit::PeakAnnotation , ProteinResolver::MSDGroup , ProteinResolver::PeptideEntry , RawMSSignalSimulation::ContaminantInfo
- intensity_ : CentroidPeak , ChromatogramPeak , MultiplexSatelliteProfile , Peak1D , Peak2D
- INTENSITY_AXIS_TITLE : SpectrumWidget
- intensity_bin_boarders : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- intensity_bin_values : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- intensity_bins_ : FeatureFinderAlgorithmPicked
- intensity_button_group_ : TOPPViewBase
- intensity_cutoff_ : MultiplexFiltering
- intensity_l : MRMFeatureQC::ComponentGroupQCs , MRMFeatureQC::ComponentQCs
- intensity_mode_ : SpectrumCanvas
- intensity_mz_step_ : FeatureFinderAlgorithmPicked
- intensity_percentage_ : FeatureFinderAlgorithmPicked
- intensity_percentage_optional_ : FeatureFinderAlgorithmPicked
- intensity_range_ : FeatureFileOptions , PeakFileOptions
- intensity_rt_step_ : FeatureFinderAlgorithmPicked
- intensity_scale_ : RawMSSignalSimulation
- intensity_scale_stddev_ : RawMSSignalSimulation
- intensity_threshold_ : FeatureFinderAlgorithmIsotopeWavelet
- intensity_thresholds_ : FeatureFinderAlgorithmPicked
- intensity_type_ : FeatureFinderAlgorithmIsotopeWavelet
- intensity_u : MRMFeatureQC::ComponentGroupQCs , MRMFeatureQC::ComponentQCs
- intensityArea : MS2Fragment
- intensityBinMap : BackgroundControl
- intensityCV_ : SuperHirnParameters
- intensityFloor_ : SuperHirnParameters
- intensityHist_ : BackgroundIntensityBin
- intensityMap_ : BackgroundIntensityBin
- intensityThreshold_ : SuperHirnParameters
- intenstype_ : IsotopeWaveletTransform< PeakType >
- intercept : ConfidenceScoring::GLM_
- intercept_ : LinearRegression , TransformationModelLinear
- intermediate_products_ : ReactionMonitoringTransition
- internal_formula_ : Residue
- internal_to_a_monoweight_ : Residue
- internal_to_b_monoweight_ : Residue
- internal_to_c_monoweight_ : Residue
- internal_to_cterm_monoweight_ : Residue
- internal_to_full_monoweight_ : Residue
- internal_to_nterm_monoweight_ : Residue
- internal_to_x_monoweight_ : Residue
- internal_to_y_monoweight_ : Residue
- internal_to_z_monoweight_ : Residue
- interp_ : TransformationModelInterpolated
- interpol_xs_ : IsotopeWaveletTransform< PeakType >
- interpol_ys_ : IsotopeWaveletTransform< PeakType >
- interpolate_precursor_purity_ : IsobaricChannelExtractor
- interpolation_ : InterpolationModel
- interpolation_mode_ : MultiGradient
- interpolation_step_ : Fitter1D , InterpolationModel
- interpretation_list_ : IncludeExcludeTarget , TraMLProduct
- ints_32 : MzMLHandlerHelper::BinaryData
- ints_64 : MzMLHandlerHelper::BinaryData
- intsum_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- intsum_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- inv_table_steps_ : IsotopeWavelet
- inventory_ : Factory< FactoryProduct > , SingletonRegistry
- IOG : IsoSpecOrderedGeneratorWrapper
- ion_cutoff_percentage_ : SequestInfile
- ion_detectors_ : Instrument
- ion_ladder_visible_ : Spectrum1DCanvas
- ion_mass_tolerance_ : MascotInfile
- ion_mobility : ChromatogramExtractorAlgorithm::ExtractionCoordinates
- ion_mode_ : AccurateMassSearchEngine , MetaboliteSpectralMatching
- ion_optics_ : Instrument , InstrumentVisualizer
- ion_ratio_feature_name : MRMFeatureQC::ComponentGroupQCs
- ion_ratio_l : MRMFeatureQC::ComponentGroupQCs
- ion_ratio_pair_name_1 : MRMFeatureQC::ComponentGroupQCs
- ion_ratio_pair_name_2 : MRMFeatureQC::ComponentGroupQCs
- ion_ratio_u : MRMFeatureQC::ComponentGroupQCs
- ion_series_weights_ : SequestInfile
- ion_sources_ : Instrument
- ion_tree_ : SiriusAdapterAlgorithm
- ion_types : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- ionization : SiriusMSFile::CompoundInfo
- ionization_method_ : IonSource , IonSourceVisualizer
- ionization_type_ : IonizationSimulation
- iontype : Interpretation
- is_absdiff_small_ : FuzzyStringComparator
- is_active_ : ChargePair , DataFilters
- IS_actual_concentration : AbsoluteQuantitationStandards::featureConcentration , AbsoluteQuantitationStandards::runConcentration
- IS_component_name : AbsoluteQuantitationStandards::runConcentration
- is_decoy : ParentMolecule , IDFilter::HasDecoyAnnotation< HitType >
- is_end_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , MatchedIterator< CONT_T, TRAIT, CONST_T >
- IS_feature : AbsoluteQuantitationStandards::featureConcentration
- is_initialized_ : AccurateMassSearchEngine
- is_instantiated_ : ModificationsDB
- is_internal : ToolDescriptionInternal
- is_inverse_orientation_ : AxisWidget
- is_isotope_1_mono : CompNovoIonScoringBase::IonScore
- is_log_ : AxisWidget
- is_ms1_shown_ : SpectraIdentificationViewWidget
- IS_name_ : AbsoluteQuantitationMethod
- is_number : FuzzyStringComparator::StreamElement_
- is_openpepxl_ : XQuestResultXMLHandler
- is_prefix : DecoyHelper::Result
- is_protein_note_ : XTandemXMLFile
- is_repeatable_ : CVMappingTerm
- is_result_valid_ : SignalToNoiseEstimator< Container >
- is_running_ : StopWatch
- is_space : FuzzyStringComparator::StreamElement_
- is_spectrum_note_ : XTandemXMLFile
- is_status_success_ : FuzzyStringComparator
- is_swapped_ : Spectrum1DCanvas
- isd_group : ProteinResolver::MSDGroup , ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry
- isds : ProteinResolver::ResolverResult
- iso_ : MassAnalyzerVisualizer
- iso_map_ : TwoDOptimization
- iso_map_iter : TwoDOptimization::Data
- iso_number_ms2_negative : IsobaricQuantifierStatistics
- iso_number_reporter_different : IsobaricQuantifierStatistics
- iso_number_reporter_negative : IsobaricQuantifierStatistics
- iso_pattern_ : FeatureHypothesis
- iso_similarity_ : AccurateMassSearchEngine
- iso_solution_different_intensity : IsobaricQuantifierStatistics
- iso_total_intensity_negative : IsobaricQuantifierStatistics
- isolation_width_ : MassAnalyzer
- ISOPEAKS : MSPeak
- isoscore : SiriusMzTabWriter::SiriusAdapterHit
- isotope : NucleicAcidSearchEngine::PrecursorInfo
- isotope_ : SiriusAdapterAlgorithm
- isotope_correction_enabled_ : IsobaricQuantifier
- isotope_corrections_ : ITRAQLabeler
- isotope_correlation : OpenSwath_Scores
- isotope_distance_ : ExtendedIsotopeModel , IsotopeModel
- isotope_distribution_ : IsotopeModel
- isotope_distributions_ : CompNovoIdentificationBase , CompNovoIonScoringBase , FeatureFinderAlgorithmPicked , IsotopeDistributionCache
- isotope_filt_svm_ : FeatureFindingMetabo
- isotope_filtering_model_ : FeatureFindingMetabo
- isotope_label_type_ : MSstatsFile::MSstatsLine_
- isotope_lorentz_fwhm_ : IsotopeModel
- isotope_model_ : TheoreticalSpectrumGenerator
- isotope_overlap : OpenSwath_Scores
- isotope_pattern_iterations_ : SiriusAdapterAlgorithm
- isotope_pmin_ : FeatureFinderIdentificationAlgorithm
- isotope_probs_ : FeatureFinderIdentificationAlgorithm
- isotope_stdev_ : ExtendedIsotopeFitter1D , ExtendedIsotopeModel , IsotopeFitter1D , IsotopeModel
- ISOTOPECORRECTIONS_EIGHTPLEX : ItraqConstants
- ISOTOPECORRECTIONS_FOURPLEX : ItraqConstants
- ISOTOPECORRECTIONS_TMT_SIXPLEX : ItraqConstants
- isotopePattern : LCElutionPeak
- isotopes_ : Element , IMSElement
- isotopes_per_peptide_max_ : FeatureFinderMultiplexAlgorithm , MultiplexFiltering
- isotopes_per_peptide_min_ : FeatureFinderMultiplexAlgorithm , MultiplexFiltering
- isotopes_sim_score_ : AccurateMassSearchResult
- isotopesTrace_ : ConsensusIsotopePattern
- isotopicPeaks_ : DeconvPeak
- isotopIdx_ : CentroidPeak
- it_ : ConsensusXMLFile
- it_ref_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
- it_tgt_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
- itemenclosed_ : CsvFile
- items : IDFilter::GetMatchingItems< HitType, Entry >
- itemseperator_ : CsvFile
- ITG : IsoSpecThresholdGeneratorWrapper , IsoSpecThresholdWrapper
- itraq_type_ : ITRAQLabeler