| OpenMS 2.5.0

Public Member Functions | Private Member Functions | List of all members
QuantitativeExperimentalDesign Class Reference

Merge files according to experimental design. More...

`#include <OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h>`

Inheritance diagram for QuantitativeExperimentalDesign:

## Public Member Functions

| QuantitativeExperimentalDesign ()
| Default constructor. More...
| ~QuantitativeExperimentalDesign () override
void | applyDesign2Resolver (ProteinResolver &resolver, TextFile &file, StringList &fileNames)
| xxxxxxx More...
Public Member Functions inherited from DefaultParamHandler
| DefaultParamHandler (const String &name)
| Constructor with name that is displayed in error messages. More...
| DefaultParamHandler (const DefaultParamHandler &rhs)
| Copy constructor. More...
virtual | ~DefaultParamHandler ()
| Destructor. More...
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs)
| Assignment operator. More...
virtual bool | operator== (const DefaultParamHandler &rhs) const
| Equality operator. More...
void | setParameters (const Param &param)
| Sets the parameters. More...
const Param & | getParameters () const
| Non-mutable access to the parameters. More...
const Param & | getDefaults () const
| Non-mutable access to the default parameters. More...
const String & | getName () const
| Non-mutable access to the name. More...
void | setName (const String &name)
| Mutable access to the name. More...
const std::vector< String > & | getSubsections () const
| Non-mutable access to the registered subsections. More...

## Private Member Functions

| QuantitativeExperimentalDesign (const QuantitativeExperimentalDesign &)
| Not implemented. More...
QuantitativeExperimentalDesign & | operator= (const QuantitativeExperimentalDesign &)
| Not implemented. More...
void | mergeConsensusMaps_ (ConsensusMap &map, const String &experiment, StringList &file_paths)
void | mergeIDFiles_ (std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const String &experiment, StringList &file_paths)
void | findRelevantFilePaths_ (std::map< String, StringList > &design2FileBaseName, std::map< String, StringList > &design2FilePath, StringList &filePaths)
void | analyzeHeader_ (UInt &expCol, UInt &fileCol, StringList &header)
| Analyze header, which column represents filename and experimental setting. More...
void | getSeparator_ (String &separator)
| Helper class to get separator of the experimental design text file. More...
void | mapFiles2Design_ (std::map< String, StringList > &experiments, TextFile &file)
| helper class. which file name belongs to which experimental setting More...

## Additional Inherited Members

Protected Member Functions inherited from DefaultParamHandler
virtual void | updateMembers_ ()
| This method is used to update extra member variables at the end of the setParameters() method. More...
void | defaultsToParam_ ()
| Updates the parameters after the defaults have been set in the constructor. More...
Protected Attributes inherited from DefaultParamHandler
Param | param_
| Container for current parameters. More...
Param | defaults_
| Container for default parameters. This member should be filled in the constructor of derived classes! More...
std::vector< String > | subsections_
| Container for registered subsections. This member should be filled in the constructor of derived classes! More...
String | error_name_
| Name that is displayed in error messages during the parameter checking. More...
bool | check_defaults_
| If this member is set to false no checking if parameters in done;. More...
bool | warn_empty_defaults_
| If this member is set to false no warning is emitted when defaults are empty;. More...

## Detailed Description

Merge files according to experimental design.

This class

## Constructor & Destructor Documentation

## ◆ QuantitativeExperimentalDesign() [1/2]

QuantitativeExperimentalDesign | ( |  | ) |

Default constructor.

## ◆ ~QuantitativeExperimentalDesign()

~QuantitativeExperimentalDesign | ( |  | ) |

override

## ◆ QuantitativeExperimentalDesign() [2/2]

QuantitativeExperimentalDesign | ( | const QuantitativeExperimentalDesign & |  | ) |

private

Not implemented.

## Member Function Documentation

## ◆ analyzeHeader_()

void analyzeHeader_ | ( | UInt & | expCol,
|  | UInt & | fileCol,
|  | StringList & | header
| ) |  |

private

Analyze header, which column represents filename and experimental setting.

## ◆ applyDesign2Resolver()

void applyDesign2Resolver | ( | ProteinResolver & | resolver,
|  | TextFile & | file,
|  | StringList & | fileNames
| ) |  |

xxxxxxx

Note
  xxxxxx

## ◆ findRelevantFilePaths_()

void findRelevantFilePaths_ | ( | std::map< String, StringList > & | design2FileBaseName,
|  | std::map< String, StringList > & | design2FilePath,
|  | StringList & | filePaths
| ) |  |

private

## ◆ getSeparator_()

void getSeparator_ | ( | String & | separator | ) |

private

Helper class to get separator of the experimental design text file.

## ◆ mapFiles2Design_()

void mapFiles2Design_ | ( | std::map< String, StringList > & | experiments,
|  | TextFile & | file
| ) |  |

private

helper class. which file name belongs to which experimental setting

## ◆ mergeConsensusMaps_()

void mergeConsensusMaps_ | ( | ConsensusMap & | map,
|  | const String & | experiment,
|  | StringList & | file_paths
| ) |  |

private

## ◆ mergeIDFiles_()

void mergeIDFiles_ | ( | std::vector< ProteinIdentification > & | proteins,
|  | std::vector< PeptideIdentification > & | peptides,
|  | const String & | experiment,
|  | StringList & | file_paths
| ) |  |

private

## ◆ operator=()

QuantitativeExperimentalDesign& operator= | ( | const QuantitativeExperimentalDesign & |  | ) |

private

Not implemented.