| OpenMS 2.5.0

### - p -

- p : GammaDistributionFitter::GammaDistributionFitResult
- p_ : MessagePasserFactory< Label > , ToolDescriptionHandler
- p_cleave : EnzymaticDigestionLogModel::CleavageModel_
- p_miss : EnzymaticDigestionLogModel::CleavageModel_
- p_pv_map_ : MzIdentMLDOMHandler
- packages_ : SplineInterpolatedPeaks::Navigator , SplineInterpolatedPeaks
- painter_ : Spectrum3DOpenGLCanvas
- pair_min_quality_ : SimplePairFinder
- pairfinder_ : MapAlignmentAlgorithmPoseClustering
- pairfinder_input_ : FeatureGroupingAlgorithmUnlabeled
- param : ToolExternalDetails , LayerData
- param_ : DefaultParamHandler , FeatureXMLFile , IdXMLFile , INIFileEditorWindow , ParamXMLHandler , LocalLinearMap , MapAlignmentAlgorithmKD , ParamEditor , SVMWrapper , TOPPASToolConfigDialog , TOPPASToolVertex , TOPPBase
- param_binsize_ : XFDRAlgorithm
- param_cmdline_ : TOPPBase
- param_common_ : TOPPBase
- param_common_tool_ : TOPPBase
- param_decoy_string_ : XFDRAlgorithm
- param_groups_ : MzMLValidator , MzQuantMLValidator
- param_inifile_ : TOPPBase
- param_instance_ : TOPPBase
- param_maxborder_ : XFDRAlgorithm
- param_minborder_ : XFDRAlgorithm
- param_mindeltas_ : XFDRAlgorithm
- param_minionsmatched_ : XFDRAlgorithm
- param_minscore_ : XFDRAlgorithm
- PARAM_NAME : LogConfigHandler
- param_name : TOPPASToolVertex::IOInfo
- param_no_qvalues_ : XFDRAlgorithm
- param_uniquexl_ : XFDRAlgorithm
- parameter_cvs : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- parameter_ups : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- parameters_ : IdXMLFile , ModelDescription< D > , MzTabParameterList , TOPPBase
- params : MRMFeaturePicker::ComponentGroupParams , MRMFeaturePicker::ComponentParams
- params_ : AcqusHandler , PepXMLFile , TransformationModel , TransformationXMLFile
- params_intensity_ : FeatureDistance
- params_mz_ : FeatureDistance
- params_rt_ : FeatureDistance
- parent_ : TOPPASInputFileDialog
- parent_matches : IdentifiedSequence< SeqType >
- parent_molecule_groupings_ : IdentificationData
- parent_molecule_lookup_ : IdentificationData
- parent_molecule_refs : ParentMoleculeGroup
- parent_molecules_ : IdentificationData
- parentMap : Pattern< TNeedle, FuzzyAC >
- parents : ControlledVocabulary::CVTerm
- parse_double_ : StringUtils
- parse_float_ : StringUtils
- parsing_success_ : IndexedMzMLHandler
- partial_sequence_ : SequestInfile
- pass_threshold_ : IdentificationHit
- path : ExperimentalDesign::MSFileSectionEntry , ToolExternalDetails
- path_ : ParamXMLHandler
- path_to_file_ : SourceFile , SourceFileVisualizer
- pattern_tolerance_ : FeatureFinderAlgorithmPicked
- patterns : SIPPeptide
- patterns_ : MultiplexFiltering
- pbuf_ : LogStreamBuf
- pe_ev_map_ : MzIdentMLDOMHandler
- peak : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , FeatureFinderAlgorithmPickedHelperStructs::Seed , PeakIndex
- peak_annotations : MoleculeQueryMatch
- peak_apex_intensity : PeakCandidate
- peak_before_mono_max_ppm_diff_ : DIAScoring
- peak_bound_ : PeakPickerCWT
- peak_bound_ms2_level_ : PeakPickerCWT
- peak_colors_1d : LayerData
- peak_corr_bound_ : PeakPickerCWT
- peak_count_ : MzDataHandler , MzXMLHandler::SpectrumData
- peak_depth : ProbablePhosphoSites
- peak_height_max_ : TargetedSpectraExtractor
- peak_height_min_ : TargetedSpectraExtractor
- peak_integration_ : MRMTransitionGroupPicker
- peak_map_ : MSSim , SpectrumCheapDPCorr
- peak_mass_tolerance_ : InspectInfile , SequestInfile
- peak_meta_ : MSDataSqlConsumer
- peak_penstyle_ : Spectrum1DCanvas
- peak_position_ : Annotation1DPeakItem
- PEAK_SCORE : SHFeature
- peak_spread_ : TargetedSpectraExtractor::BinnedSpectrumComparator
- peak_tolerance_ : ProteinIdentificationVisualizer
- peak_width_ : FeatureFinderIdentificationAlgorithm , PeakPickerIterative , PeakPickerMRM
- peakcount_ : NLargest , WindowMower
- peaks : FeatureFinderAlgorithmPickedHelperStructs::MassTrace , IsotopeCluster , LayerData , OptimizePeakDeconvolution::Data , OptimizePick::Data
- peaks_ : IMSIsotopeDistribution
- peaks_per_peptide_ : MultiplexIsotopicPeakPattern
- pen_ : Annotations1DContainer
- pen_color_ : TOPPASVertex
- pen_size_max_ : Spectrum2DCanvas
- pen_size_min_ : Spectrum2DCanvas
- penalties : OptimizePeakDeconvolution::Data , OptimizePick::Data , TwoDOptimization::Data
- penalties_ : OptimizePeakDeconvolution , OptimizePick , TwoDOptimization
- pep_hit_ : ConsensusXMLFile , FeatureXMLFile , IdXMLFile , ProtXMLFile
- pep_id_ : ConsensusXMLFile , FeatureXMLFile , IdXMLFile , MzIdentMLDOMHandler , MzIdentMLHandler , ProtXMLFile
- pep_ids_ : IdXMLFile , XQuestResultXMLHandler
- pep_indices : ConnectedComponent
- pep_map_ : MzIdentMLDOMHandler
- PEP_PROB : MS2Info
- pep_quant_ : PeptideAndProteinQuant
- pep_result_ : IDMergerAlgorithm
- pep_sequences_ : MzIdentMLHandler
- pep_to_indist_prot_grp_ : PeptideProteinResolution
- pep_to_prot : PeptideIndexing::FoundProteinFunctor
- pepHitVtx_to_run_ : IDBoostGraph
- pepPrior_ : MessagePasserFactory< Label >
- peptide : RNPxlReportRow
- peptide_ : AASequence
- peptide_abundance_assay : MzTabPeptideSectionRow
- peptide_abundance_std_error_study_variable : MzTabPeptideSectionRow
- peptide_abundance_stdev_study_variable : MzTabPeptideSectionRow
- peptide_abundance_study_variable : MzTabPeptideSectionRow
- peptide_compare_ : FeatureFinderIdentificationAlgorithm
- peptide_data_ : MzTab
- peptide_entries : ProteinResolver::ResolverResult
- peptide_evidences_ : ConsensusXMLFile , IdXMLFile , PeptideHit
- peptide_group_label : TransitionTSVFile::TSVTransition , LightCompound
- peptide_group_label_ : Peptide
- peptide_hit : ProteinResolver::PeptideEntry
- peptide_hit_ : PepXMLFile
- peptide_hit_index : LayerData
- peptide_hits_ : XTandemXMLFile
- peptide_id_index : LayerData , OPXLDataStructs::CrossLinkSpectrumMatch
- peptide_id_meta_values_ : XQuestResultXMLHandler
- peptide_identification : ProteinResolver::PeptideEntry , ProteinResolver::ResolverResult
- peptide_identification_index_ : MascotXMLHandler
- peptide_identifications_ : OMSSAXMLFile
- peptide_intensities_ : IsobaricNormalizer
- peptide_map_ : FeatureFinderIdentificationAlgorithm
- peptide_mass : OPXLDataStructs::AASeqWithMass
- peptide_mass_unit_ : SequestInfile
- peptide_max_size_ : SimpleSearchEngineAlgorithm
- peptide_min_size_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SimpleSearchEngineAlgorithm
- peptide_missed_cleavages_ : SimpleSearchEngineAlgorithm
- peptide_mod_index : SimpleSearchEngineAlgorithm::AnnotatedHit_
- peptide_motif_ : SimpleSearchEngineAlgorithm
- peptide_quantification_unit : MzTabMetaData
- peptide_ratios_ : IsobaricNormalizer
- peptide_ref : LightTransition
- peptide_ref_ : IncludeExcludeTarget , ReactionMonitoringTransition
- peptide_reference_map_ : TargetedExperiment
- peptide_reference_map_dirty_ : TargetedExperiment
- peptide_search_engine_score : MzTabMetaData
- peptide_seq : OPXLDataStructs::AASeqWithMass
- peptide_similarity_ : MultiplexFiltering
- peptide_weight : RNPxlReportRow
- peptidehit_charge_ : PeptideHitVisualizer
- peptidehit_rank_ : PeptideHitVisualizer
- peptidehit_score_ : PeptideHitVisualizer
- peptidehit_sequence_ : PeptideHitVisualizer
- peptideProbabilityThreshold_ : SuperHirnParameters
- PeptideRefMap_ : MRMFeatureFinderScoring
- PeptideRTMap_ : ChromatogramExtractor
- peptides : LayerData , ProteinResolver::ISDGroup , ProteinResolver::MSDGroup , ProteinResolver::ProteinEntry , Protein
- peptides_ : BaseFeature , PepXMLFile , PepXMLFileMascot , TargetedExperiment
- PeptideSequence : TransitionTSVFile::TSVTransition
- peptidoforms : TransitionTSVFile::TSVTransition
- percentage_ : GradientVisualizer
- percentage_factor_ : SpectrumCanvas
- percentageIntensityElutionBorderVariation_ : SuperHirnParameters
- percentages_ : Gradient
- percentiles_after : TransformationDescription::TransformationStatistics
- percentiles_before : TransformationDescription::TransformationStatistics
- percents : TransformationDescription::TransformationStatistics
- percTIC : OPXLDataStructs::CrossLinkSpectrumMatch
- performance_ : SimpleSVM
- permut_ : CompNovoIdentificationBase::Permut
- permute_cache_ : CompNovoIdentificationBase
- pg_scores_ : MRMFeature
- ph_ : Digestion
- ph_2_sdat_ : MzIdentMLHandler
- PI : EmgGradientDescent , SHFeature
- pi_ : MRMTransitionGroupPicker
- picked_peaks : TwoDOptimization::Data
- picker_ : FIAMSDataProcessor , MRMTransitionGroupPicker
- pidv_caller_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
- pint_mono : SiriusMSFile::CompoundInfo
- pka_ : Residue
- pkb_ : Residue
- pkc_ : Residue
- pmass : SiriusMSFile::CompoundInfo
- pMZ_LIST : ProcessData
- point_indices_ : GridBasedCluster
- points_across_baseline : PeakIntegrator::PeakShapeMetrics
- points_across_half_height : PeakIntegrator::PeakShapeMetrics
- polarity_ : HasScanPolarity< SpectrumType > , InstrumentSettings , IonSource , IonSourceVisualizer
- pool_file_ : DocumentIDTagger
- pos : PenaltyFactors , PeakPickerMaxima::PeakCandidate
- pos_ : ConsensusXMLFile , ROCCurve
- pos_adducts_ : AccurateMassSearchEngine
- pos_adducts_fname_ : AccurateMassSearchEngine
- pos_charges_ : Compomer
- pos_col_ : MultiGradient
- pos_max_ : SplineInterpolatedPeaks::Navigator , SplineInterpolatedPeaks , SplinePackage
- pos_min_ : SplineInterpolatedPeaks::Navigator , SplineInterpolatedPeaks , SplinePackage
- pos_param_pairs_ : MzTabModification
- pos_range_ : RangeManager< D >
- pos_step_width_ : SplinePackage
- pos_step_width_scaling_ : SplineInterpolatedPeaks::Navigator
- position : CompNovoIonScoringBase::IonScore , DeNovoIonScoring::IonScore , EnzymaticDigestionLogModel::BindingSite_ , MzTabModificationMetaData , OPXLDataStructs::AASeqWithMass , PeptideIndexing::PeptideProteinMatchInformation
- position_ : AASequence::ConstIterator , AASequence::Iterator , Annotation1DCaret , Annotation1DPeakItem , Annotation1DTextItem , ChromatogramPeak , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , AveragePosition< D > , NASequence::ConstIterator , NASequence::Iterator , Peak1D , Peak2D
- position_weighted_sum_ : AveragePosition< D >
- positions : OptimizePeakDeconvolution::Data , OptimizePick::Data , TwoDOptimization::Data
- possible_charge_states_ : Precursor
- post : MzIdentMLDOMHandler::PeptideEvidence , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow
- post_moves : MappingParam
- potential_adducts_ : FeatureDeconvolution , MetaboliteFeatureDeconvolution
- potential_cmp : MetaboTargetedAssay
- potential_rmts : MetaboTargetedAssay
- potential_target_ : TOPPASScene
- pp_ : PeakPickerMRM
- pp_identifier_2_sil_ : MzIdentMLHandler
- ppm : ChromExtractParams
- ppm_ : LinearResamplerAlign , SpectrumAccessQuadMZTransforming , Tagger
- ppm_error_abs_sum : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_linear : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_linear_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_linear_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_xlinks : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_xlinks_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_error_abs_sum_xlinks_beta : OPXLDataStructs::CrossLinkSpectrumMatch
- ppm_max_ : SiriusAdapterAlgorithm
- ppm_tolerance_ : GaussFilterAlgorithm
- ppmToleranceForMZClustering_ : SuperHirnParameters
- pre : MzIdentMLDOMHandler::PeptideEvidence , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow
- pre_ : MultiGradient
- pre_int_ : SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
- pre_int_H2O_ : SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
- pre_int_NH3_ : SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
- pre_min_ : MultiGradient
- pre_moves : MappingParam
- pre_release_identifier : VersionInfo::VersionDetails
- pre_score : OPXLDataStructs::CrossLinkSpectrumMatch
- pre_size_ : MultiGradient
- pre_states_ : HMMState
- pre_steps_ : MultiGradient
- precision : MzMLHandlerHelper::BinaryData
- precision_ : RealMassDecomposer , Weights , MzXMLHandler::SpectrumData
- precisions_ : MzDataHandler
- precursor : TransitionTSVFile::TSVTransition
- precursor_ : ChromatogramSettings
- precursor_adduct_ : SpectralMatch
- precursor_charge : SpectrumMetaDataLookup::SpectrumMetaData , TransitionTSVFile::TSVTransition
- precursor_charge_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , SvmTheoreticalSpectrumGenerator
- precursor_chromatogram_map_ : MRMTransitionGroup< ChromatogramType, TransitionType >
- precursor_chromatograms_ : MRMTransitionGroup< ChromatogramType, TransitionType >
- precursor_correction : OPXLDataStructs::CrossLinkSpectrumMatch , OPXLDataStructs::ProteinProteinCrossLink
- precursor_correction_steps_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- precursor_cv_terms_ : IncludeExcludeTarget , ReactionMonitoringTransition
- precursor_error_ppm : NucleicAcidSearchEngine::AnnotatedHit , OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_feature_map_ : MRMFeature
- precursor_features_ : MRMFeature , MRMFeatureOpenMS
- precursor_int : MetaboTargetedAssay
- precursor_intensity_ : NucleicAcidSpectrumGenerator
- precursor_isolation_target : ChromatogramMeta
- precursor_isotopes_ : SimpleSearchEngineAlgorithm
- precursor_lower_mz_ : XTandemInfile
- precursor_mass : OPXLDataStructs::XLPrecursor
- precursor_mass_error_unit_ : XTandemInfile
- precursor_mass_tolerance : DBSearchParam , ProteinIdentification::SearchParameters
- precursor_mass_tolerance_ : BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSumAgreeingIntensities , CompNovoIdentificationCID , InspectInfile , MascotInfile , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SequestInfile , SimpleSearchEngineAlgorithm
- precursor_mass_tolerance_minus_ : XTandemInfile
- precursor_mass_tolerance_plus_ : XTandemInfile
- precursor_mass_tolerance_ppm : ProteinIdentification::SearchParameters
- precursor_mass_tolerance_unit_ : SimpleSearchEngineAlgorithm
- precursor_mass_tolerance_unit_ppm_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
- precursor_mass_type_ : XTandemInfile
- precursor_max_charge_ : SimpleSearchEngineAlgorithm
- precursor_min_charge_ : SimpleSearchEngineAlgorithm
- precursor_mz : SpectrumMetaDataLookup::SpectrumMetaData , LightTransition
- precursor_mz_ : IncludeExcludeTarget , ReactionMonitoringTransition
- precursor_mz_error_ : MetaboliteSpectralMatching
- precursor_mz_selected_ion_ : PeakFileOptions
- precursor_mz_tolerance_ : SiriusAdapterAlgorithm
- precursor_mz_tolerance_unit_ : SiriusAdapterAlgorithm
- precursor_ref : NucleicAcidSearchEngine::AnnotatedHit
- precursor_residual_peak_count : OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_rt : SpectrumMetaDataLookup::SpectrumMetaData
- precursor_rt_tolerance_ : SiriusAdapterAlgorithm
- precursor_signal_proportion : OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_statistics_ : SpectrumAnnotator
- precursor_target_intensity : OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_target_peak_count : OPXLDataStructs::CrossLinkSpectrumMatch
- precursor_tol_ : MRMMapping
- precursor_tolerance : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- precursor_tolerance_ : ProteinIdentificationVisualizer
- precursor_tolerance_ppm : DBSearchParam
- precursor_total_intensity : OPXLDataStructs::CrossLinkSpectrumMatch
- precursorCHRG : MS2Fragment
- precursorMass : MSPeak
- precursorMZ : MS2ConsensusSpectrum , MS2Fragment , MSPeak
- precursors_ : BinnedSpectrum , SpectrumSettings
- precursorScan : IsobaricChannelExtractor::PuritySate_
- prediction_ : IncludeExcludeTarget , ReactionMonitoringTransition
- predictor_names_ : SimpleSVM
- prefix : FuzzyStringComparator::PrefixInfo_ , LogStreamBuf::StreamStruct
- prefix_ : PeptideIndexing
- prefix_whitespaces : FuzzyStringComparator::PrefixInfo_
- preprocessing_tech : LPWrapper::SolverParam
- pressure_ : HPLC
- PREV_AA : MS2Info
- previous_rt_ : MSDataAggregatingConsumer
- previous_seq_ : XTandemXMLFile
- primary_files : DataProcessingStep
- primary_id_ : SpectralMatch
- print_debug_ : EmgGradientDescent
- print_duplicate_references_ : SequestInfile
- prm_ : OpenSwathWorkflowBase
- pro_id_ : MzIdentMLDOMHandler , MzIdentMLHandler
- probabilities : SimpleSVM::Prediction
- probabilities_ : PSProteinInference
- probability : ProteinIdentification::ProteinGroup
- proc : TOPPASScene::TOPPProcess
- processing_ : MzMLHandler
- processing_actions_ : DataProcessing
- processing_softwares_ : IdentificationData
- processing_step_opt : AppliedProcessingStep
- processing_steps_ : IdentificationData
- prod_ : IsotopeWaveletTransform< PeakType >
- product : TransitionTSVFile::TSVTransition
- product_ : ChromatogramSettings , ReactionMonitoringTransition
- product_cv_terms_ : IncludeExcludeTarget
- product_isolation_target : ChromatogramMeta
- product_mz : LightTransition
- product_mz_ : IncludeExcludeTarget , ProductVisualizer
- product_tol_ : MRMMapping
- product_window_low_ : ProductVisualizer
- product_window_up_ : ProductVisualizer
- products_ : SpectrumSettings
- profile_ : SiriusAdapterAlgorithm
- profileIntensities_ : RawData
- profileMasses_ : RawData
- prog_log_ : FeatureFinderIdentificationAlgorithm , FeatureFinderMultiplexAlgorithm
- progress_ : ConsensusXMLFile , FeatureFinderMultiplexAlgorithm , FeatureGroupingAlgorithmKD , QcMLFile
- progress_counter_ : FeatureFinderAlgorithmIsotopeWavelet
- projection_box_ : Spectrum2DWidget
- projection_horz_ : Spectrum2DWidget
- projection_max_ : Spectrum2DWidget
- projection_mz_ : Spectrum2DCanvas
- projection_peaks_ : Spectrum2DWidget
- projection_rt_ : Spectrum2DCanvas
- projection_sum_ : Spectrum2DWidget
- projection_vert_ : Spectrum2DWidget
- projections_2d_ : TOPPViewBase
- projections_auto_ : Spectrum2DWidget
- projections_timer_ : Spectrum2DWidget
- properties_B_ : GridBasedCluster
- property_A_ : GridBasedCluster
- prot_acc : PSLPFormulation::IndexTriple
- prot_acc_to_indist_prot_grp_ : PeptideProteinResolution
- prot_grp_indices : ConnectedComponent
- prot_hit_ : ConsensusXMLFile , FeatureXMLFile , IdXMLFile
- prot_id_ : ConsensusXMLFile , FeatureXMLFile , IdXMLFile , PepXMLFile , ProtXMLFile
- prot_id_counter_ : PrecursorIonSelection
- prot_id_in_run_ : IdXMLFile
- prot_ids_ : IdXMLFile , XQuestResultXMLHandler
- prot_masses_ : PrecursorIonSelectionPreprocessing
- prot_peptide_seq_map_ : PrecursorIonSelectionPreprocessing
- prot_quant_ : PeptideAndProteinQuant
- prot_result_ : IDMergerAlgorithm
- protein_ : AhoCorasickAmbiguous
- protein_abundance_assay : MzTabProteinSectionRow
- protein_abundance_std_error_study_variable : MzTabProteinSectionRow
- protein_abundance_stdev_study_variable : MzTabProteinSectionRow
- protein_abundance_study_variable : MzTabProteinSectionRow
- protein_data_ : MzTab , ProteinResolver
- protein_entries : ProteinResolver::ResolverResult
- protein_group_ : ProtXMLFile
- protein_groups_ : ProteinIdentification
- protein_hits_ : ProteinIdentification , XTandemXMLFile
- protein_identification_ : MascotXMLHandler , XTandemXMLFile
- protein_identifications_ : ConsensusMap , ExperimentalSettings , FeatureMap
- protein_index : PeptideIndexing::PeptideProteinMatchInformation
- protein_mass_filter_ : SequestInfile
- protein_name_length_ : InspectOutfile
- protein_quantification_unit : MzTabMetaData
- protein_reference_map_ : TargetedExperiment
- protein_reference_map_dirty_ : TargetedExperiment
- protein_refs : Peptide , LightCompound
- protein_score_type_ : ProteinIdentification
- protein_search_engine_score : MzTabMetaData
- protein_significance_threshold_ : ProteinIdentification
- protein_terminus : PepXMLFile::AminoAcidModification
- protein_type : ProteinResolver::ProteinEntry
- protein_uids_ : XTandemXMLFile
- proteinhit_accession_ : ProteinHitVisualizer
- proteinhit_rank_ : ProteinHitVisualizer
- proteinhit_score_ : ProteinHitVisualizer
- proteinhit_sequence_ : ProteinHitVisualizer
- proteinid_to_accession_ : ConsensusXMLFile , FeatureXMLFile , IdXMLFile
- ProteinName : TransitionTSVFile::TSVTransition
- proteins : ProteinResolver::ISDGroup , ProteinResolver::MSDGroup , ProteinResolver::PeptideEntry , LightTargetedExperiment , TargetedExperiment
- proteins_ : PepXMLFile , TargetedExperiment
- protIDs_ : IDBoostGraph
- pseudo_counts_ : HiddenMarkovModel
- psi_ : IsotopeWaveletTransform< PeakType >
- psi_id_ : DigestionEnzymeProtein
- psi_mod_accession_ : ResidueModification
- psm_data_ : MzTab
- PSM_ID : MzTabPSMSectionRow
- psm_search_engine_score : MzTabMetaData
- pt_prot_map_ : PrecursorIonSelectionPreprocessing
- ptm_file_ : PepNovoInfile
- ptm_informations_ : PTMXMLHandler
- PTMname_residues_mass_type_ : InspectInfile , SequestInfile
- ptr_ : BaseVisualizer< ObjectType >
- pubchemids : CsiFingerIdMzTabWriter::CsiAdapterHit
- publication : MzTabMetaData
- publications_ : TargetedExperiment
- pv_db_map_ : MzIdentMLDOMHandler
- pw_filtering_ : ElutionPeakDetection