| OpenMS 2.5.0

PrecursorIonSelectionPreprocessing Member List

This is the complete list of members for PrecursorIonSelectionPreprocessing, including all inherited members.

bin_masses_ | PrecursorIonSelectionPreprocessing | protected
check_defaults_ | DefaultParamHandler | protected
counter_ | PrecursorIonSelectionPreprocessing | protected
dbPreprocessing(String db_path, bool save=true) | PrecursorIonSelectionPreprocessing |
dbPreprocessing(String db_path, String rt_model_path, String dt_model_path, bool save=true) | PrecursorIonSelectionPreprocessing |
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
f_max_ | PrecursorIonSelectionPreprocessing | protected
filterTaxonomyIdentifier_(FASTAFile::FASTAEntry &entry) | PrecursorIonSelectionPreprocessing | protected
fixed_modifications_ | PrecursorIonSelectionPreprocessing | protected
fixed_mods_ | PrecursorIonSelectionPreprocessing | protected
getDefaults() const | DefaultParamHandler |
getFixedModifications() | PrecursorIonSelectionPreprocessing | inline
getGaussMu() | PrecursorIonSelectionPreprocessing | inline
getGaussSigma() | PrecursorIonSelectionPreprocessing | inline
getMasses(String acc) const | PrecursorIonSelectionPreprocessing |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getProteinPeptideSequenceMap() const | PrecursorIonSelectionPreprocessing |
getProteinPTMap() const | PrecursorIonSelectionPreprocessing |
getProteinRTMap() const | PrecursorIonSelectionPreprocessing |
getProtMasses() const | PrecursorIonSelectionPreprocessing |
getPT(String prot_id, Size peptide_index) | PrecursorIonSelectionPreprocessing |
getRT(String prot_id, Size peptide_index) | PrecursorIonSelectionPreprocessing |
getRTProbability(String prot_id, Size peptide_index, Feature &feature) | PrecursorIonSelectionPreprocessing |
getRTProbability(double pred_rt, Feature &feature) | PrecursorIonSelectionPreprocessing |
getRTProbability_(double min_obs_rt, double max_obs_rt, double pred_rt) | PrecursorIonSelectionPreprocessing | protected
getScanNumber_(double rt) | PrecursorIonSelectionPreprocessing | protected
getSubsections() const | DefaultParamHandler |
getWeight(double mass) | PrecursorIonSelectionPreprocessing |
loadPreprocessedDB_(String path) | PrecursorIonSelectionPreprocessing | protected
loadPreprocessing() | PrecursorIonSelectionPreprocessing |
masses_ | PrecursorIonSelectionPreprocessing | protected
mu_ | PrecursorIonSelectionPreprocessing | protected
operator=(const PrecursorIonSelectionPreprocessing &source) | PrecursorIonSelectionPreprocessing |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
PrecursorIonSelectionPreprocessing() | PrecursorIonSelectionPreprocessing |
PrecursorIonSelectionPreprocessing(const PrecursorIonSelectionPreprocessing &source) | PrecursorIonSelectionPreprocessing |
prot_masses_ | PrecursorIonSelectionPreprocessing | protected
prot_peptide_seq_map_ | PrecursorIonSelectionPreprocessing | protected
pt_prot_map_ | PrecursorIonSelectionPreprocessing | protected
rt_prot_map_ | PrecursorIonSelectionPreprocessing | protected
savePreprocessedDB_(String db_path, String path) | PrecursorIonSelectionPreprocessing | protected
savePreprocessedDBWithRT_(String db_path, String path) | PrecursorIonSelectionPreprocessing | protected
sequences_ | PrecursorIonSelectionPreprocessing | protected
setFixedModifications(StringList &modifications) | PrecursorIonSelectionPreprocessing |
setGaussianParameters(double mu, double sigma) | PrecursorIonSelectionPreprocessing |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
sigma_ | PrecursorIonSelectionPreprocessing | protected
subsections_ | DefaultParamHandler | protected
updateMembers_() override | PrecursorIonSelectionPreprocessing | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~PrecursorIonSelectionPreprocessing() override | PrecursorIonSelectionPreprocessing |