| OpenMS 2.5.0

FeatureFindingMetabo Member List

This is the complete list of members for FeatureFindingMetabo, including all inherited members.

charge_lower_bound_ | FeatureFindingMetabo | private
charge_upper_bound_ | FeatureFindingMetabo | private
check_defaults_ | DefaultParamHandler | protected
chrom_fwhm_ | FeatureFindingMetabo | private
CMD enum value | ProgressLogger |
computeAveragineSimScore_(const std::vector< double > &intensities, const double &molecular_weight) const | FeatureFindingMetabo | private
computeCosineSim_(const std::vector< double > &, const std::vector< double > &) const | FeatureFindingMetabo | private
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
elements_ | FeatureFindingMetabo | private
elementsFromString_(const std::string &elements_string) const | FeatureFindingMetabo | private
enable_RT_filtering_ | FeatureFindingMetabo | private
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
FeatureFindingMetabo() | FeatureFindingMetabo |
findLocalFeatures_(const std::vector< const MassTrace *> &candidates, double total_intensity, std::vector< FeatureHypothesis > &output_hypotheses) const | FeatureFindingMetabo | private
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
getTheoreticIsotopicMassWindow_(const std::vector< Element const *> alphabet, int peakOffset) const | FeatureFindingMetabo | private
GUI enum value | ProgressLogger |
isLegalIsotopePattern_(const FeatureHypothesis &feat_hypo) const | FeatureFindingMetabo | private
isotope_filt_svm_ | FeatureFindingMetabo | private
isotope_filtering_model_ | FeatureFindingMetabo | private
last_invoke_ | ProgressLogger | mutable protected
loadIsotopeModel_(const String &) | FeatureFindingMetabo | private
local_mz_range_ | FeatureFindingMetabo | private
local_rt_range_ | FeatureFindingMetabo | private
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
remove_single_traces_ | FeatureFindingMetabo | private
report_chromatograms_ | FeatureFindingMetabo | private
report_convex_hulls_ | FeatureFindingMetabo | private
report_summed_ints_ | FeatureFindingMetabo | private
run(std::vector< MassTrace > &input_mtraces, FeatureMap &output_featmap, std::vector< std::vector< OpenMS::MSChromatogram > > &output_chromatograms) | FeatureFindingMetabo |
scoreMZ_(const MassTrace &, const MassTrace &, Size isotopic_position, Size charge, Range isotope_window) const | FeatureFindingMetabo | private
scoreMZByExpectedMean_(Size iso_pos, Size charge, const double diff_mz, double mt_variances) const | FeatureFindingMetabo | private
scoreMZByExpectedRange_(Size charge, const double diff_mz, double mt_variances, Range isotope_window) const | FeatureFindingMetabo | private
scoreRT_(const MassTrace &, const MassTrace &) const | FeatureFindingMetabo | private
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
svm_feat_centers_ | FeatureFindingMetabo | private
svm_feat_scales_ | FeatureFindingMetabo | private
total_intensity_ | FeatureFindingMetabo | private
type_ | ProgressLogger | mutable protected
updateMembers_() override | FeatureFindingMetabo | protected virtual
use_mz_scoring_by_element_range_ | FeatureFindingMetabo | private
use_mz_scoring_C13_ | FeatureFindingMetabo | private
use_smoothed_intensities_ | FeatureFindingMetabo | private
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~FeatureFindingMetabo() override | FeatureFindingMetabo |
~ProgressLogger() | ProgressLogger |