| OpenMS 2.5.0

PepNovoOutfile.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Sandro Andreotti, Chris Bielow $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/CONCEPT/Exception.h>
38 #include <OpenMS/DATASTRUCTURES/String.h>
39 #include <OpenMS/METADATA/PeptideIdentification.h>
40
41 #include <vector>
42 #include <map>
43
44 namespace OpenMS
45 {
46 class ProteinIdentification;
47
56 class OPENMS_DLLAPI PepNovoOutfile
57 {
58 public:
59
60 typedef std::map<Size, std::pair<double, double> > IndexPosMappingType;
61
63 PepNovoOutfile();
64
66 PepNovoOutfile(const PepNovoOutfile & pepnovo_outfile);
67
69 virtual ~PepNovoOutfile();
70
72 PepNovoOutfile & operator=(const PepNovoOutfile & pepnovo_outfile);
73
75 bool operator==(const PepNovoOutfile & pepnovo_outfile) const;
76
89 void load(const std::string & result_filename, std::vector<PeptideIdentification> & peptide_identifications,
90 ProteinIdentification & protein_identification,
91 const double & score_threshold,
92 const IndexPosMappingType & id_rt_mz,
93 const std::map<String, String> & mod_id_map);
94
102 void getSearchEngineAndVersion(const String & pepnovo_output_without_parameters_filename, ProteinIdentification & protein_identification);
103
104 };
105
106 } //namespace OpenMS
107
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::PepNovoOutfile
Representation of a PepNovo output file.
Definition: PepNovoOutfile.h:56
Exception.h
OpenMS::ProteinIdentification
Representation of a protein identification run.
Definition: ProteinIdentification.h:71
String.h
PeptideIdentification.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
KDTree::operator==
bool operator==(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition: KDTree.h:806
OpenMS::PepNovoOutfile::IndexPosMappingType
std::map< Size, std::pair< double, double > > IndexPosMappingType
Definition: PepNovoOutfile.h:60