| OpenMS 2.5.0

MzQuantMLHandler Member List

This is the complete list of members for MzQuantMLHandler, including all inherited members.

ActionMode enum name | XMLHandler |
asBool_(const String &in) | XMLHandler | inline protected
asDateTime_(String date_string) | XMLHandler | inline protected
asDouble_(const String &in) | XMLHandler | inline protected
asFloat_(const String &in) | XMLHandler | inline protected
asInt_(const String &in) | XMLHandler | inline protected
asInt_(const XMLCh *in) | XMLHandler | inline protected
asUInt_(const String &in) | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
cf_cf_obj_ | MzQuantMLHandler | private
characters(const XMLCh *const chars, const XMLSize_t length) override | MzQuantMLHandler |
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) | XMLHandler |
cm_cf_ids_ | MzQuantMLHandler | private
cmsq_ | MzQuantMLHandler | protected
current_assay_ | MzQuantMLHandler | private
current_cf_id_ | MzQuantMLHandler | private
current_col_types_ | MzQuantMLHandler | private
current_count_ | MzQuantMLHandler | private
current_dm_values_ | MzQuantMLHandler | private
current_dp_ | MzQuantMLHandler | private
current_files_ | MzQuantMLHandler | private
current_id_ | MzQuantMLHandler | private
current_orderedps_ | MzQuantMLHandler | private
current_pas_ | MzQuantMLHandler | private
current_row_ | MzQuantMLHandler | private
current_sws_ | MzQuantMLHandler | private
cv_ | MzQuantMLHandler | protected
cv_terms_ | XMLHandler | protected
cvp_stack_ | MzQuantMLHandler | private
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inline protected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | MzQuantMLHandler |
equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inline protected
error(const xercesc::SAXParseException &exception) override | XMLHandler |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
error_message_ | XMLHandler | mutable protected
errorString() | XMLHandler |
f_cf_ids_ | MzQuantMLHandler | private
f_f_obj_ | MzQuantMLHandler | private
fatalError(const xercesc::SAXParseException &exception) override | XMLHandler |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
file_ | XMLHandler | protected
getChildWithName_(const String &parent_accession, const String &name) const | MzQuantMLHandler | protected
getLoadDetail() const | XMLHandler | virtual
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const xercesc::Attributes &attributes, const String &cv_ref, const String &unit_accession="") | MzQuantMLHandler | protected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value) | MzQuantMLHandler | protected
LD_ALLDATA enum value | XMLHandler |
LD_COUNTS_WITHOPTIONS enum value | XMLHandler |
LD_RAWCOUNTS enum value | XMLHandler |
LOAD enum value | XMLHandler |
load_detail_ | XMLHandler | protected
LOADDETAIL enum name | XMLHandler |
logger_ | MzQuantMLHandler | protected
msq_ | MzQuantMLHandler | protected
MzQuantMLHandler(const MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger) | MzQuantMLHandler |
MzQuantMLHandler(MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger) | MzQuantMLHandler |
MzQuantMLHandler() | MzQuantMLHandler | private
MzQuantMLHandler(const MzQuantMLHandler &rhs) | MzQuantMLHandler | private
numden_r_ids_ | MzQuantMLHandler | private
open_tags_ | XMLHandler | protected
operator=(const MzQuantMLHandler &rhs) | MzQuantMLHandler | private
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inline protected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inline protected
r_r_obj_ | MzQuantMLHandler | private
r_rtemp_ | MzQuantMLHandler | private
reset() | XMLHandler |
setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual
sm_ | XMLHandler | protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | MzQuantMLHandler |
STORE enum value | XMLHandler |
tag_ | MzQuantMLHandler | protected
up_stack_ | MzQuantMLHandler | private
version_ | XMLHandler | protected
warning(const xercesc::SAXParseException &exception) override | XMLHandler |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler |
writeCVParams_(String &s, const Map< String, std::vector< CVTerm > > &, UInt indent) | MzQuantMLHandler | protected
writeFeature_(String &feature_xml, const std::vector< FeatureMap > &fm, UInt indentation_level) | MzQuantMLHandler | protected
writeTo(std::ostream &os) override | MzQuantMLHandler | virtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected
writeUserParams_(std::ostream &os, const MetaInfoInterface &meta, UInt indent) | MzQuantMLHandler | protected
writeUserParams_(String &s, const MetaInfoInterface &meta, UInt indent) | MzQuantMLHandler | protected
writeXMLEscape(const String &to_escape) | XMLHandler | inline static
XMLHandler(const String &filename, const String &version) | XMLHandler |
~MzQuantMLHandler() override | MzQuantMLHandler |
~XMLHandler() override | XMLHandler |