| OpenMS 2.5.0

IonizationSimulation Member List

This is the complete list of members for IonizationSimulation, including all inherited members.

basic_residues_ | IonizationSimulation | private
check_defaults_ | DefaultParamHandler | protected
CMD enum value | ProgressLogger |
countIonizedResidues_(const AASequence &) const | IonizationSimulation | private
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
ESI enum value | IonizationSimulation |
esi_adducts_ | IonizationSimulation | private
esi_impurity_probabilities_ | IonizationSimulation | private
esi_probability_ | IonizationSimulation | private
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
ionization_type_ | IonizationSimulation | private
IonizationSimulation() | IonizationSimulation |
IonizationSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr) | IonizationSimulation | explicit
IonizationSimulation(const IonizationSimulation &source) | IonizationSimulation |
IonizationType enum name | IonizationSimulation |
ionize(SimTypes::FeatureMapSim &features, ConsensusMap &charge_consensus, SimTypes::MSSimExperiment &experiment) | IonizationSimulation |
ionizeEsi_(SimTypes::FeatureMapSim &, ConsensusMap &charge_consensus) | IonizationSimulation | private
ionizeMaldi_(SimTypes::FeatureMapSim &, ConsensusMap &charge_consensus) | IonizationSimulation | private
isFeatureValid_(const Feature &feature) | IonizationSimulation | inline private
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
MALDI enum value | IonizationSimulation |
maldi_probabilities_ | IonizationSimulation | private
max_adduct_charge_ | IonizationSimulation | private
maximal_mz_measurement_limit_ | IonizationSimulation | private
minimal_mz_measurement_limit_ | IonizationSimulation | private
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const IonizationSimulation &source) | IonizationSimulation |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
rnd_gen_ | IonizationSimulation | protected
setDefaultParams_() | IonizationSimulation | private
setFeatureProperties_(Feature &f, const double &adduct_mass, const String &adduct_formula, const SimTypes::SimChargeType charge, const SimTypes::SimIntensityType new_intensity, const Size parent_index) | IonizationSimulation | private
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutable protected
updateMembers_() override | IonizationSimulation | private virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~IonizationSimulation() override | IonizationSimulation |
~ProgressLogger() | ProgressLogger |