| OpenMS 2.5.0

RawData.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Lukas Mueller, Markus Mueller $
33 // --------------------------------------------------------------------------
34 //
35 /*
36 * RawData.h
37 * PeakDetection
38 *
39 * Created by Markus Mueller on 10/19/06.
40 *
41 * Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch
42 * December 2010
43 *
44 */
45
46 #pragma once
47
48 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
49
50 #include <vector>
51 #include <ostream>
52
53 #include <OpenMS/config.h>
54
55 namespace OpenMS
56 {
57
58 // Class for the storage of raw MS data
59 class SUPERHIRN_DLLAPI RawData
60 {
61
62 public:
63
64 RawData() {}
65 RawData(std::vector<double> &, std::vector<double> &);
66 virtual ~RawData();
67
68 friend std::ostream & operator<<(std::ostream &, RawData &);
69
70 /*
71 * @brief Retrieve raw data as mass and intensity vectors. First argument: Mass values in profile mode
72 * Second argument: Intensity values in profile mode
73 */
74 void get(std::vector<double> &, std::vector<double> &);
75
76 /*
77 * @brief Set raw data as mass and intensity vectors. First argument: Mass values in profile mode
78 * Second argument: Intensity values in profile mode
79 */
80 void set(std::vector<double> &, std::vector<double> &);
81
82 // Virtual functions
83 virtual void smooth()
84 {
85 }
86
87 protected:
88 std::vector<double> profileMasses_;
89 std::vector<double> profileIntensities_;
90 };
91
92 std::ostream & operator<<(std::ostream & out, RawData & data);
93
94 inline RawData::RawData(std::vector<double> & masses, std::vector<double> & intensities)
95 {
96 profileMasses_ = masses;
97 profileIntensities_ = intensities;
98 }
99
100 inline void RawData::get(std::vector<double> & masses, std::vector<double> & intensities)
101 {
102 masses = profileMasses_;
103 intensities = profileIntensities_;
104 }
105
106 inline void RawData::set(std::vector<double> & masses, std::vector<double> & intensities)
107 {
108 profileMasses_ = masses;
109 profileIntensities_ = intensities;
110 }
111
112 } // ns
113
OpenMS::RawData
Definition: RawData.h:59
OpenMS::operator<<
std::ostream & operator<<(std::ostream &os, const AccurateMassSearchResult &amsr)
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::RawData::set
void set(std::vector< double > &, std::vector< double > &)
Definition: RawData.h:106
OpenMS::RawData::get
void get(std::vector< double > &, std::vector< double > &)
Definition: RawData.h:100
OpenMS::RawData::smooth
virtual void smooth()
Definition: RawData.h:83
OpenMS::RawData::RawData
RawData()
Definition: RawData.h:64
OpenMS::RawData::profileMasses_
std::vector< double > profileMasses_
Definition: RawData.h:88
OpenMS::RawData::profileIntensities_
std::vector< double > profileIntensities_
Definition: RawData.h:89