| OpenMS 2.5.0

### - m -

- main() : TOPPBase
- main_() : Epifany , NucleicAcidSearchEngine , TOPPBase , TOPPGNPSExport , UTILProteomicsLFQ
- mainWindowNeedsUpdate() : TOPPASScene
- makeAutoRemoveTempDirectory_() : TOPPBase
- makeAxes_() : Spectrum3DOpenGLCanvas
- makeAxesTicks_() : Spectrum3DOpenGLCanvas
- makeConsensusFeature_() : QTClusterFinder
- makeDataAsStick_() : Spectrum3DOpenGLCanvas
- makeDataAsTopView_() : Spectrum3DOpenGLCanvas
- makeGridLines_() : Spectrum3DOpenGLCanvas
- makeGround_() : Spectrum3DOpenGLCanvas
- makePrecursorSelectionForKnownLCMSMap() : OfflinePrecursorIonSelection
- makeScanMap_() : PepXMLFile
- makeStream() : CompressedInputSource
- makeTempDirectory_() : TOPPBase
- manhattanDist_() : ConfidenceScoring
- map2csv() : QcMLFile
- map_() : PeakIntensityPredictor
- MapAlignmentAlgorithmIdentification() : MapAlignmentAlgorithmIdentification
- MapAlignmentAlgorithmKD() : MapAlignmentAlgorithmKD
- MapAlignmentAlgorithmPoseClustering() : MapAlignmentAlgorithmPoseClustering
- MapAlignmentAlgorithmSpectrumAlignment() : MapAlignmentAlgorithmSpectrumAlignment
- MapAlignmentAlgorithmTreeGuided() : MapAlignmentAlgorithmTreeGuided
- MapAlignmentEvaluationAlgorithm() : MapAlignmentEvaluationAlgorithm
- MapAlignmentEvaluationAlgorithmPrecision() : MapAlignmentEvaluationAlgorithmPrecision
- MapAlignmentEvaluationAlgorithmRecall() : MapAlignmentEvaluationAlgorithmRecall
- mapComponentsToConcentrations() : AbsoluteQuantitationStandards
- mapExperiment() : MRMMapping
- mapExperimentToTransitionList() : MRMFeatureFinderScoring
- mapFiles2Design_() : QuantitativeExperimentalDesign
- mapId2MzMLs_() : UTILProteomicsLFQ
- mapIndex() : KDTreeFeatureMaps
- mapMzML2Ids_() : UTILProteomicsLFQ
- mapPrecursorsToIdentifications() : IDMapper
- mapSearchEngineScoreToCvParam_() : MzTabFile
- mapSearchEngineToCvParam_() : MzTabFile
- mapSeeds2Features() : IsotopeWaveletTransform< PeakType >
- margin() : AxisWidget
- MarkerMower() : MarkerMower
- markUnreachable() : TOPPASMergerVertex , TOPPASSplitterVertex , TOPPASVertex
- marr_() : ContinuousWaveletTransformNumIntegration
- MascotGenericFile() : MascotGenericFile
- MascotInfile() : MascotInfile
- MascotRemoteQuery() : MascotRemoteQuery
- MascotXMLFile() : MascotXMLFile
- MascotXMLHandler() : MascotXMLHandler
- MassAnalyzer() : MassAnalyzer
- MassAnalyzerVisualizer() : MassAnalyzerVisualizer
- massCorrectionTerm() : PScore
- MassDecomposition() : MassDecomposition
- MassDecompositionAlgorithm() : MassDecompositionAlgorithm
- MassExplainer() : MassExplainer
- MassTrace() : MassTrace
- MasstraceCorrelator() : MasstraceCorrelator
- MassTraceDetection() : MassTraceDetection
- MassTraces() : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
- Match() : TargetedSpectraExtractor::Match
- matchedCurrentChain() : XQuestScores
- MatchedIterator() : MatchedIterator< CONT_T, TRAIT, CONST_T >
- matchMasses_() : TOFCalibration
- matchMassTraces_() : MasstraceCorrelator
- matchModification_() : PepXMLFile , PepXMLFileMascot , ProtXMLFile
- matchOddsScore() : XQuestScores
- matchOddsScoreSimpleSpec() : XQuestScores
- matchSpectrum() : TargetedSpectraExtractor
- Matrix() : Matrix< Value >
- max_size() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT >
- maxBound() : Histogram< ValueType, BinSizeType >
- maxLength() : TOPPASLogWindow
- MaxLikeliFitter1D() : MaxLikeliFitter1D
- maxPosition() : DIntervalBase< D >
- maxPositive() : DPosition< D, TCoordinateType >
- maxValue() : Histogram< ValueType, BinSizeType >
- maxX() : DIntervalBase< D >
- maxY() : DIntervalBase< D >
- mean() : BasicStatistics< RealT > , mean_and_stddev
- mean_and_stddev() : mean_and_stddev
- meanIntensity_() : MSstatsFile
- median() : CalibrationData
- MemUsage() : SysInfo::MemUsage
- merge() : IsotopeDistribution , Param , PeptideIndexing::FoundProteinFunctor , QcMLFile
- mergeable() : ProteinIdentification::SearchParameters
- mergeAllChannelFeatures_() : SILACLabeler
- mergeAllIDRuns() : ConsensusMapMergerAlgorithm
- mergeAlongTime() : FIAMSDataProcessor
- mergeAnnotatedSpectra() : OPXLSpectrumProcessingAlgorithms
- mergeConsensusMaps_() : QuantitativeExperimentalDesign
- mergeFailed() : TOPPASMergerVertex
- mergeFeatures() : MS1FeatureMerger
- mergeFeatures_() : ICPLLabeler , ITRAQLabeler , O18Labeler , SILACLabeler
- mergeIDFiles_() : QuantitativeExperimentalDesign
- mergeIntoLayer() : Spectrum2DCanvas
- mergeMS2Fragments() : ClusteredMS2ConsensusSpectrum
- mergeMULTISEPeptideIds() : PercolatorFeatureSetHelper
- mergeMULTISEProteinIds() : PercolatorFeatureSetHelper
- mergeOverlappingWindows_() : InclusionExclusionList
- mergePartitions() : SVMWrapper
- mergeProteinAccessions_() : BaseLabeler
- mergeProteinIdentificationsMaps_() : BaseLabeler
- mergeProteinIDRuns() : ConsensusMapMergerAlgorithm
- mergeProteinsAcrossFractionsAndReplicates() : ConsensusMapMergerAlgorithm
- mergeSpectra_() : SpectraMerger
- mergeSpectraBlockWise() : SpectraMerger
- mergeSpectraPrecursors() : SpectraMerger
- mergeVeto_() : GridBasedClustering< Metric >
- MessagePasserFactory() : MessagePasserFactory< Label >
- messageReady() : TOPPASScene
- MetaboliteFeatureDeconvolution() : MetaboliteFeatureDeconvolution
- MetaboliteSpectralMatching() : MetaboliteSpectralMatching
- MetaDataBrowser() : MetaDataBrowser
- metadataFileDialog() : TOPPViewBase
- MetaInfo() : MetaInfo
- MetaInfoDescription() : MetaInfoDescription
- MetaInfoDescriptionVisualizer() : MetaInfoDescriptionVisualizer
- MetaInfoInterface() : MetaInfoInterface
- MetaInfoInterfaceUtils() : MetaInfoInterfaceUtils
- MetaInfoRegistry() : MetaInfoRegistry
- MetaInfoVisualizer() : MetaInfoVisualizer
- metaPasses_() : DataFilters
- metaRegistry() : MetaInfoInterface
- MetaStatsValue_() : LayerStatisticsDialog::MetaStatsValue_
- metaValueExists() : MetaInfoInterface
- minBound() : Histogram< ValueType, BinSizeType >
- MinimumDistance() : MinimumDistance
- minNegative() : DPosition< D, TCoordinateType >
- minPosition() : DIntervalBase< D >
- minPositive() : DPosition< D, TCoordinateType >
- minValue() : Histogram< ValueType, BinSizeType >
- minX() : DIntervalBase< D >
- minY() : DIntervalBase< D >
- mirrorModeActive() : Spectrum1DCanvas
- MissedCleavages() : MissedCleavages
- MissingInformation() : MissingInformation
- MockFeature() : MockFeature
- MockMRMFeature() : MockMRMFeature
- MockSignalToNoise() : MockSignalToNoise
- MockTransitionGroup() : MockTransitionGroup
- ModelDescription() : ModelDescription< D >
- Modification() : Modification , Peptide::Modification
- modificationCorrectionTerm() : PScore
- ModificationDefinition() : ModificationDefinition
- ModificationDefinitionsSet() : ModificationDefinitionsSet
- ModificationsDB() : ModificationsDB
- modificationStatus_() : SpectrumCanvas
- ModificationVisualizer() : ModificationVisualizer
- modified() : ParamEditorDelegate , ParamEditor
- ModifyMultiIndexAddProcessingStep() : IdentificationData::ModifyMultiIndexAddProcessingStep< ElementType >
- ModifyMultiIndexAddScore() : IdentificationData::ModifyMultiIndexAddScore< ElementType >
- ModifyMultiIndexRemoveParentMatches() : IdentificationData::ModifyMultiIndexRemoveParentMatches< ElementType >
- modifyStrings() : SVOutStream
- MoleculeParentMatch() : MoleculeParentMatch
- MoleculeQueryMatch() : MoleculeQueryMatch
- monitorFileChanged_() : FileWatcher
- MorphologicalFilter() : MorphologicalFilter
- mouseDoubleClickEvent() : EnhancedTabBar , MultiGradientSelector , Spectrum2DCanvas , TOPPASEdge , TOPPASInputFileListVertex , TOPPASSplitterVertex , TOPPASTabBar , TOPPASToolVertex , TOPPASVertex
- mouseMoveEvent() : HistogramWidget , MultiGradientSelector , Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DOpenGLCanvas , TOPPASTreeView , TOPPASVertex
- mousePressEvent() : ColorSelector , HistogramWidget , MultiGradientSelector , Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DOpenGLCanvas , TOPPASTreeView , TOPPASVertex
- mouseReleaseEvent() : HistogramWidget , MultiGradientSelector , Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DOpenGLCanvas , TOPPASVertex
- move() : Annotation1DCaret , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem , Annotation1DTextItem
- moveCurrentItem() : TOPPASInputFilesDialog
- moveNewEdgeTo_() : TOPPASVertex
- movePepIDsAndRefProteinsToResultFaster_() : IDMergerAlgorithm
- moveSelectedItems() : TOPPASScene
- mQ_() : TOFCalibration
- mQAv_() : TOFCalibration
- MRMAssay() : MRMAssay
- MRMBatchFeatureSelector() : MRMBatchFeatureSelector
- MRMDecoy() : MRMDecoy
- MRMFeature() : MRMFeature
- MRMFeatureFilter() : MRMFeatureFilter
- MRMFeatureFinderScoring() : MRMFeatureFinderScoring
- MRMFeatureOpenMS() : MRMFeatureOpenMS
- MRMFeaturePicker() : MRMFeaturePicker
- MRMFeaturePickerFile() : MRMFeaturePickerFile
- MRMFeatureQC() : MRMFeatureQC
- MRMFeatureQCFile() : MRMFeatureQCFile
- MRMFeatureSelector() : MRMFeatureSelector
- MRMFeatureSelector_test() : MRMFeatureSelector_test
- MRMFragmentSelection() : MRMFragmentSelection
- MRMIonSeries() : MRMIonSeries
- MRMMapping() : MRMMapping
- MRMTransitionGroup() : MRMTransitionGroup< ChromatogramType, TransitionType >
- MRMTransitionGroupPicker() : MRMTransitionGroupPicker
- MS1Extraction_() : OpenSwathWorkflowBase
- ms1FeatureClustering() : SuperHirnParameters
- MS1FeatureMerger() : MS1FeatureMerger
- MS2ConsensusSpectrum() : MS2ConsensusSpectrum
- MS2Feature() : MS2Feature
- MS2File() : MS2File
- MS2Fragment() : MS2Fragment
- Ms2IdentificationRate() : Ms2IdentificationRate
- MS2Info() : MS2Info
- Ms2SpectrumStats() : Ms2SpectrumStats
- MSChromatogram() : MSChromatogram
- MSDataAggregatingConsumer() : MSDataAggregatingConsumer
- MSDataCachedConsumer() : MSDataCachedConsumer
- MSDataChainingConsumer() : MSDataChainingConsumer
- MSDataSqlConsumer() : MSDataSqlConsumer
- MSDataStoringConsumer() : MSDataStoringConsumer
- MSDataTransformingConsumer() : MSDataTransformingConsumer
- MSDataWritingConsumer() : MSDataWritingConsumer
- MSExperiment() : MSExperiment
- MSFileSectionEntry() : ExperimentalDesign::MSFileSectionEntry
- msFilter_() : MapAlignmentAlgorithmSpectrumAlignment
- MsInspectFile() : MsInspectFile
- MSNumpressCoder() : MSNumpressCoder
- MSPeak() : MSPeak
- MSPFile() : MSPFile
- MSPGenericFile() : MSPGenericFile
- MSPGenericFile_friend() : MSPGenericFile_friend
- MSQuantifications() : MSQuantifications
- MSSim() : MSSim
- MSSpectrum() : MSSpectrum
- MSstatsFile() : MSstatsFile
- MSstatsLine_() : MSstatsFile::MSstatsLine_
- MSstatsTMTLine_() : MSstatsFile::MSstatsTMTLine_
- MultiGradient() : MultiGradient
- MultiGradientSelector() : MultiGradientSelector
- MultiplexClustering() : MultiplexClustering
- MultiplexDeltaMasses() : MultiplexDeltaMasses
- MultiplexDeltaMassesGenerator() : MultiplexDeltaMassesGenerator
- MultiplexDistance() : MultiplexClustering::MultiplexDistance
- MultiplexFilteredMSExperiment() : MultiplexFilteredMSExperiment
- MultiplexFilteredPeak() : MultiplexFilteredPeak
- MultiplexFiltering() : MultiplexFiltering
- MultiplexFilteringCentroided() : MultiplexFilteringCentroided
- MultiplexFilteringProfile() : MultiplexFilteringProfile
- MultiplexIsotopicPeakPattern() : MultiplexIsotopicPeakPattern
- MultiplexSatelliteCentroided() : MultiplexSatelliteCentroided
- MultiplexSatelliteProfile() : MultiplexSatelliteProfile
- myLog2_() : IsotopeWavelet
- myPow() : IsotopeWavelet
- myPow2_() : IsotopeWavelet
- mz() : KDTreeFeatureMaps
- MZBegin() : IsotopeWaveletTransform< PeakType >::TransSpectrum , MSSpectrum
- MzCalibration() : MzCalibration
- MzDataFile() : MzDataFile
- MzDataHandler() : MzDataHandler
- MzDataValidator() : MzDataValidator
- MZEnd() : IsotopeWaveletTransform< PeakType >::TransSpectrum , MSChromatogram , MSSpectrum
- MzIdentMLDOMHandler() : MzIdentMLDOMHandler
- MzIdentMLFile() : MzIdentMLFile
- MzIdentMLHandler() : MzIdentMLHandler
- MzIdentMLValidator() : MzIdentMLValidator
- MzMLFile() : MzMLFile
- MzMLHandler() : MzMLHandler
- MzMLSpectrumDecoder() : MzMLSpectrumDecoder
- MzMLSqliteHandler() : MzMLSqliteHandler
- MzMLSqliteSwathHandler() : MzMLSqliteSwathHandler
- MzMLSwathFileConsumer() : MzMLSwathFileConsumer
- MzMLValidator() : MzMLValidator
- MzQuantMLFile() : MzQuantMLFile
- MzQuantMLHandler() : MzQuantMLHandler
- MzQuantMLValidator() : MzQuantMLValidator
- MzTab() : MzTab
- MzTabBoolean() : MzTabBoolean
- MzTabDouble() : MzTabDouble
- MzTabDoubleList() : MzTabDoubleList
- MzTabFile() : MzTabFile
- MzTabInteger() : MzTabInteger
- MzTabIntegerList() : MzTabIntegerList
- MzTabMetaData() : MzTabMetaData
- MzTabModification() : MzTabModification
- MzTabNullAbleBase() : MzTabNullAbleBase
- MzTabNullNaNAndInfAbleBase() : MzTabNullNaNAndInfAbleBase
- MzTabParameter() : MzTabParameter
- MzTabProteinSectionRow() : MzTabProteinSectionRow
- MzTabSpectraRef() : MzTabSpectraRef
- MzTabString() : MzTabString
- MzTabStringList() : MzTabStringList
- mzToXAxis() : SpectrumCanvas
- MZTrafoModel() : MZTrafoModel
- MzXMLFile() : MzXMLFile
- MzXMLHandler() : MzXMLHandler