| OpenMS 2.5.0

OpenSwathScoring Member List

This is the complete list of members for OpenSwathScoring, including all inherited members.

add_up_spectra_ | OpenSwathScoring | private
calculateChromatographicIdScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< std::string > &native_ids_identification, const std::vector< std::string > &native_ids_detection, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators, OpenSwath_Ind_Scores &scores) | OpenSwathScoring |
calculateChromatographicScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< std::string > &native_ids, const std::vector< std::string > &precursor_ids, const std::vector< double > &normalized_library_intensity, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators, OpenSwath_Scores &scores) | OpenSwathScoring |
calculateDIAIdScores(OpenSwath::IMRMFeature *imrmfeature, const TransitionType &transition, const std::vector< OpenSwath::SwathMap > swath_maps, OpenMS::DIAScoring &diascoring, OpenSwath_Scores &scores, double drift_lower, double drift_upper) | OpenSwathScoring |
calculateDIAScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< TransitionType > &transitions, const std::vector< OpenSwath::SwathMap > &swath_maps, OpenSwath::SpectrumAccessPtr ms1_map, OpenMS::DIAScoring &diascoring, const CompoundType &compound, OpenSwath_Scores &scores, std::vector< double > &mzerror_ppm, const double drift_lower, const double drift_upper, const double drift_target) | OpenSwathScoring |
calculateLibraryScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< TransitionType > &transitions, const CompoundType &compound, const double normalized_feature_rt, OpenSwath_Scores &scores) | OpenSwathScoring |
calculatePrecursorDIAScores(OpenSwath::SpectrumAccessPtr ms1_map, OpenMS::DIAScoring &diascoring, double precursor_mz, double rt, const CompoundType &compound, OpenSwath_Scores &scores, double drift_lower, double drift_upper) | OpenSwathScoring |
CompoundType typedef | OpenSwathScoring | private
fetchSpectrumSwath(std::vector< OpenSwath::SwathMap > swath_maps, double RT, int nr_spectra_to_add, const double drift_lower, const double drift_upper) | OpenSwathScoring |
fetchSpectrumSwath(OpenSwath::SpectrumAccessPtr swath_map, double RT, int nr_spectra_to_add, const double drift_lower, const double drift_upper) | OpenSwathScoring |
getAddedSpectra_(OpenSwath::SpectrumAccessPtr swath_map, double RT, int nr_spectra_to_add, const double drift_lower, const double drift_upper) | OpenSwathScoring | protected
getNormalized_library_intensities_(const std::vector< TransitionType > &transitions, std::vector< double > &normalized_library_intensity) | OpenSwathScoring |
im_drift_extra_pcnt_ | OpenSwathScoring | private
initialize(double rt_normalization_factor, int add_up_spectra, double spacing_for_spectra_resampling, const double drift_extra, const OpenSwath_Scores_Usage &su, const std::string &spectrum_addition_method) | OpenSwathScoring |
OpenSwathScoring() | OpenSwathScoring |
rt_normalization_factor_ | OpenSwathScoring | private
spacing_for_spectra_resampling_ | OpenSwathScoring | private
spectra_addition_method_ | OpenSwathScoring | private
su_ | OpenSwathScoring | private
TransitionType typedef | OpenSwathScoring | private
~OpenSwathScoring() | OpenSwathScoring |