| OpenMS 2.5.0

Classes
Chemistry

## Classes

class | AAIndex
| Representation of selected AAIndex properties. More...
class | AASequence
| Representation of a peptide/protein sequence. More...
class | DigestionEnzyme
| Abstract base class for digestion enzymes. More...
class | DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
| Digestion enzyme database (base class) More...
class | DigestionEnzymeProtein
| Representation of a digestion enzyme for proteins (protease) More...
class | DigestionEnzymeRNA
| Representation of a digestion enzyme for RNA (RNase) More...
class | Element
| Representation of an element. More...
class | ElementDB
| Stores elements. More...
class | EmpiricalFormula
| Representation of an empirical formula. More...
class | EnzymaticDigestion
| Class for the enzymatic digestion of sequences. More...
class | EnzymaticDigestionLogModel
| Class for the Log L model of enzymatic digestion of proteins. More...
class | CoarseIsotopePatternGenerator
| Isotope pattern generator for coarse isotope distributions. More...
class | FineIsotopePatternGenerator
| Isotope pattern generator for fine isotope distributions. More...
class | ModificationDefinition
| Representation of modification definition. More...
class | ModificationDefinitionsSet
| Representation of a set of modification definitions. More...
class | ModificationsDB
| database which holds all residue modifications from UniMod More...
class | NASequence
| Representation of a nucleic acid sequence. More...
class | NucleicAcidSpectrumGenerator
| Generates theoretical spectra for nucleic acid sequences. More...
class | ProteaseDB
| Database for enzymes that digest proteins (proteases) More...
class | ProteaseDigestion
| Class for the enzymatic digestion of proteins. More...
class | Residue
| Representation of a residue. More...
class | ResidueDB
| residue data base which holds residues More...
class | Ribonucleotide
| Representation of a ribonucleotide (modified or unmodified) More...
class | RibonucleotideDB
| Database of ribonucleotides (modified and unmodified) More...
class | RNaseDB
| Database for enzymes that digest RNA (RNases) More...
class | RNaseDigestion
| Class for the enzymatic digestion of RNAs. More...
class | SimpleTSGXLMS
| Generates theoretical spectra for cross-linked peptides. More...
class | SpectrumAnnotator
| Annotates spectra from identifications and theoretical spectra or identifications from spectra and theoretical spectra matching with various options. More...
class | SvmTheoreticalSpectrumGenerator
| Simulates MS2 spectra with support vector machines. More...
class | SvmTheoreticalSpectrumGeneratorSet
| Loads SvmTheoreticalSpectrumGenerator instances for different charges. More...
class | SvmTheoreticalSpectrumGeneratorTrainer
| Train SVM models that are used by SvmTheoreticalSpectrumGenerator. More...
class | TheoreticalSpectrumGenerator
| Generates theoretical spectra for peptides with various options. More...
class | TheoreticalSpectrumGeneratorXLMS
| Generates theoretical spectra for cross-linked peptides. More...

## Detailed Description