| OpenMS 2.5.0

ConsensusMapNormalizerAlgorithmQuantile.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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31 // $Maintainer: Johannes Veit $
32 // $Authors: Johannes Junker $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/KERNEL/ConsensusMap.h>
38
39 namespace OpenMS
40 {
41
46 class OPENMS_DLLAPI ConsensusMapNormalizerAlgorithmQuantile
47 {
48 private:
50 ConsensusMapNormalizerAlgorithmQuantile(const ConsensusMapNormalizerAlgorithmQuantile & copyin);
51
53 ConsensusMapNormalizerAlgorithmQuantile & operator=(const ConsensusMapNormalizerAlgorithmQuantile & rhs);
54
55 public:
57 ConsensusMapNormalizerAlgorithmQuantile();
58
60 virtual ~ConsensusMapNormalizerAlgorithmQuantile();
61
66 static void normalizeMaps(ConsensusMap & map);
67
74 static void resample(const std::vector<double> & data_in, std::vector<double> & data_out, UInt n_resampling_points);
75
81 static void extractIntensityVectors(const ConsensusMap & map, std::vector<std::vector<double> > & out_intensities);
82
88 static void setNormalizedIntensityValues(const std::vector<std::vector<double> > & feature_ints, ConsensusMap & map);
89 };
90
91 } // namespace OpenMS
92
ConsensusMap.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::ConsensusMapNormalizerAlgorithmQuantile
Algorithms of ConsensusMapNormalizer.
Definition: ConsensusMapNormalizerAlgorithmQuantile.h:46
OpenMS::UInt
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
OpenMS::ConsensusMap
A container for consensus elements.
Definition: ConsensusMap.h:79