| OpenMS 2.5.0

BayesianProteinInferenceAlgorithm Member List

This is the complete list of members for BayesianProteinInferenceAlgorithm, including all inherited members.

BayesianProteinInferenceAlgorithm(unsigned int debug_lvl=0) | BayesianProteinInferenceAlgorithm | explicit
check_defaults_ | DefaultParamHandler | protected
checkConvertAndFilterPepHits_ | BayesianProteinInferenceAlgorithm | private
CMD enum value | ProgressLogger |
current_logger_ | ProgressLogger | mutable protected
debug_lvl_ | BayesianProteinInferenceAlgorithm | private
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
inferPosteriorProbabilities(std::vector< ProteinIdentification > &proteinIDs, std::vector< PeptideIdentification > &peptideIDs, boost::optional< const ExperimentalDesign > exp_des=boost::optional< const ExperimentalDesign >()) | BayesianProteinInferenceAlgorithm |
inferPosteriorProbabilities(ConsensusMap &cmap, boost::optional< const ExperimentalDesign > exp_des=boost::optional< const ExperimentalDesign >()) | BayesianProteinInferenceAlgorithm |
inferPosteriorProbabilities_(Internal::IDBoostGraph &ibg) | BayesianProteinInferenceAlgorithm | private
initGridSearchFromParams_(std::vector< double > &alpha_search, std::vector< double > &beta_search, std::vector< double > &gamma_search) | BayesianProteinInferenceAlgorithm | private
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
setScoreTypeAndSettings_(ProteinIdentification &proteinIDs) | BayesianProteinInferenceAlgorithm | private
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutable protected
updateMembers_() override | BayesianProteinInferenceAlgorithm | virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~BayesianProteinInferenceAlgorithm() override=default | BayesianProteinInferenceAlgorithm |
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProgressLogger() | ProgressLogger |