| OpenMS 2.5.0

Constants.h
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1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
6 //
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16 // For a full list of authors, refer to the file AUTHORS.
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29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg$
32 // $Authors: Marc Sturm $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/config.h>
38 #include <string>
39
45 namespace OpenMS
46 {
68 namespace Constants
69 {
73
75 extern OPENMS_DLLAPI const double PI;
76
78 extern OPENMS_DLLAPI const double E;
79
83 extern OPENMS_DLLAPI double EPSILON;
85
89
93 extern OPENMS_DLLAPI const double ELEMENTARY_CHARGE; // C
94
96 extern OPENMS_DLLAPI const double e0;
97
101 extern OPENMS_DLLAPI const double ELECTRON_MASS; // kg
102
106 extern OPENMS_DLLAPI const double ELECTRON_MASS_U; // u
107
111 extern OPENMS_DLLAPI const double PROTON_MASS; // kg
112
116 extern OPENMS_DLLAPI const double PROTON_MASS_U; // u
117
121 extern OPENMS_DLLAPI const double C13C12_MASSDIFF_U; // u
122
126 extern OPENMS_DLLAPI const double NEUTRON_MASS; // kg
127
131 extern OPENMS_DLLAPI const double NEUTRON_MASS_U; // u
132
136 extern OPENMS_DLLAPI const double AVOGADRO;
137
140 extern OPENMS_DLLAPI const double NA;
141
144 extern OPENMS_DLLAPI const double MOL;
145
149 extern OPENMS_DLLAPI const double BOLTZMANN;
150
153 extern OPENMS_DLLAPI const double k;
154
158 extern OPENMS_DLLAPI const double PLANCK;
159
162 extern OPENMS_DLLAPI const double h;
163
166 extern OPENMS_DLLAPI const double GAS_CONSTANT;
167
170 extern OPENMS_DLLAPI const double R;
171
174 extern OPENMS_DLLAPI const double FARADAY;
175
178 extern OPENMS_DLLAPI const double F;
179
183 extern OPENMS_DLLAPI const double BOHR_RADIUS;
184
187 extern OPENMS_DLLAPI const double a0;
188
189 // the following values from:
190 // P.W.Atkins: Physical Chemistry, 5th ed., Oxford University Press, 1995
191
195 extern OPENMS_DLLAPI const double VACUUM_PERMITTIVITY;
196
200 extern OPENMS_DLLAPI const double VACUUM_PERMEABILITY;
201
205 extern OPENMS_DLLAPI const double SPEED_OF_LIGHT;
206
209 extern OPENMS_DLLAPI const double c;
210
214 extern OPENMS_DLLAPI const double GRAVITATIONAL_CONSTANT;
215
219 extern OPENMS_DLLAPI const double FINE_STRUCTURE_CONSTANT;
221
225
229 extern OPENMS_DLLAPI const double DEG_PER_RAD;
230
234 extern OPENMS_DLLAPI const double RAD_PER_DEG;
235
239 extern OPENMS_DLLAPI const double MM_PER_INCH;
240
244 extern OPENMS_DLLAPI const double M_PER_FOOT;
245
249 extern OPENMS_DLLAPI const double JOULE_PER_CAL;
250
254 extern OPENMS_DLLAPI const double CAL_PER_JOULE;
255
256 namespace UserParam
257 {
261 extern OPENMS_DLLAPI const std::string PRECURSOR_ERROR_PPM_USERPARAM;
262
267 extern OPENMS_DLLAPI const std::string PRECURSOR_ASSIGNMENT_CORRECTION;
268
272 extern OPENMS_DLLAPI const std::string FRAGMENT_ANNOTATION_USERPARAM;
273
277 extern OPENMS_DLLAPI const std::string SPECTRUM_REFERENCE;
278
282 extern OPENMS_DLLAPI const std::string TARGET_DECOY;
283
287 extern OPENMS_DLLAPI const std::string DELTA_SCORE;
288
289 // Cross-Linking Mass Spectrometry user parameters
293 extern OPENMS_DLLAPI const std::string OPENPEPXL_SCORE;
294
298 extern OPENMS_DLLAPI const std::string OPENPEPXL_BETA_SEQUENCE;
299
303 extern OPENMS_DLLAPI const std::string OPENPEPXL_BETA_ACCESSIONS;
304
308 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_POS1;
309
313 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_POS2;
314
318 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_POS1_PROT;
319
323 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_POS2_PROT;
324
328 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_TYPE;
329
333 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_RANK;
334
338 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_MOD;
339
343 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_MASS;
344
348 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_TERM_SPEC_ALPHA;
349
353 extern OPENMS_DLLAPI const std::string OPENPEPXL_XL_TERM_SPEC_BETA;
354
358 extern OPENMS_DLLAPI const std::string OPENPEPXL_HEAVY_SPEC_RT;
359
363 extern OPENMS_DLLAPI const std::string OPENPEPXL_HEAVY_SPEC_MZ;
364
368 extern OPENMS_DLLAPI const std::string OPENPEPXL_HEAVY_SPEC_REF;
369
373 extern OPENMS_DLLAPI const std::string OPENPEPXL_TARGET_DECOY_ALPHA;
374
378 extern OPENMS_DLLAPI const std::string OPENPEPXL_TARGET_DECOY_BETA;
379
383 extern OPENMS_DLLAPI const std::string OPENPEPXL_BETA_PEPEV_PRE;
384
388 extern OPENMS_DLLAPI const std::string OPENPEPXL_BETA_PEPEV_POST;
389
393 extern OPENMS_DLLAPI const std::string OPENPEPXL_BETA_PEPEV_START;
394
398 extern OPENMS_DLLAPI const std::string OPENPEPXL_BETA_PEPEV_END;
399
403 extern OPENMS_DLLAPI const std::string XFDR_FDR;
404 }
405
407 }
408 }
OpenMS::Constants::UserParam::OPENPEPXL_XL_TERM_SPEC_ALPHA
const std::string OPENPEPXL_XL_TERM_SPEC_ALPHA
OpenMS::Constants::DEG_PER_RAD
const double DEG_PER_RAD
OpenMS::Constants::UserParam::OPENPEPXL_XL_MASS
const std::string OPENPEPXL_XL_MASS
OpenMS::Constants::C13C12_MASSDIFF_U
const double C13C12_MASSDIFF_U
OpenMS::Constants::SPEED_OF_LIGHT
const double SPEED_OF_LIGHT
OpenMS::Constants::UserParam::OPENPEPXL_XL_POS2
const std::string OPENPEPXL_XL_POS2
OpenMS::Constants::RAD_PER_DEG
const double RAD_PER_DEG
OpenMS::Constants::UserParam::OPENPEPXL_HEAVY_SPEC_RT
const std::string OPENPEPXL_HEAVY_SPEC_RT
OpenMS::Constants::FARADAY
const double FARADAY
OpenMS::Constants::k
const double k
OpenMS::Constants::UserParam::PRECURSOR_ERROR_PPM_USERPARAM
const std::string PRECURSOR_ERROR_PPM_USERPARAM
OpenMS::Constants::NEUTRON_MASS_U
const double NEUTRON_MASS_U
OpenMS::Constants::M_PER_FOOT
const double M_PER_FOOT
OpenMS::Constants::PROTON_MASS_U
const double PROTON_MASS_U
OpenMS::Constants::UserParam::OPENPEPXL_XL_TERM_SPEC_BETA
const std::string OPENPEPXL_XL_TERM_SPEC_BETA
OpenMS::Constants::UserParam::OPENPEPXL_BETA_PEPEV_START
const std::string OPENPEPXL_BETA_PEPEV_START
OpenMS::Constants::UserParam::OPENPEPXL_TARGET_DECOY_BETA
const std::string OPENPEPXL_TARGET_DECOY_BETA
OpenMS::Constants::UserParam::OPENPEPXL_XL_MOD
const std::string OPENPEPXL_XL_MOD
OpenMS::Constants::e0
const double e0
Elementary charge (alias)
OpenMS::Constants::UserParam::SPECTRUM_REFERENCE
const std::string SPECTRUM_REFERENCE
OpenMS::Constants::UserParam::OPENPEPXL_XL_POS1
const std::string OPENPEPXL_XL_POS1
OpenMS::Constants::PLANCK
const double PLANCK
OpenMS::Constants::UserParam::OPENPEPXL_HEAVY_SPEC_REF
const std::string OPENPEPXL_HEAVY_SPEC_REF
OpenMS::Constants::PROTON_MASS
const double PROTON_MASS
OpenMS::Constants::UserParam::OPENPEPXL_HEAVY_SPEC_MZ
const std::string OPENPEPXL_HEAVY_SPEC_MZ
OpenMS::Constants::R
const double R
OpenMS::Constants::UserParam::OPENPEPXL_BETA_PEPEV_PRE
const std::string OPENPEPXL_BETA_PEPEV_PRE
OpenMS::Constants::PI
const double PI
PI.
OpenMS::Constants::UserParam::OPENPEPXL_BETA_ACCESSIONS
const std::string OPENPEPXL_BETA_ACCESSIONS
OpenMS::Constants::VACUUM_PERMITTIVITY
const double VACUUM_PERMITTIVITY
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::Constants::JOULE_PER_CAL
const double JOULE_PER_CAL
OpenMS::Constants::UserParam::OPENPEPXL_XL_RANK
const std::string OPENPEPXL_XL_RANK
OpenMS::Constants::UserParam::OPENPEPXL_BETA_SEQUENCE
const std::string OPENPEPXL_BETA_SEQUENCE
OpenMS::Constants::a0
const double a0
OpenMS::Constants::BOLTZMANN
const double BOLTZMANN
OpenMS::Constants::UserParam::OPENPEPXL_XL_POS1_PROT
const std::string OPENPEPXL_XL_POS1_PROT
OpenMS::Constants::VACUUM_PERMEABILITY
const double VACUUM_PERMEABILITY
OpenMS::Constants::UserParam::TARGET_DECOY
const std::string TARGET_DECOY
OpenMS::Constants::MOL
const double MOL
OpenMS::Constants::c
const double c
OpenMS::Constants::MM_PER_INCH
const double MM_PER_INCH
OpenMS::Constants::GRAVITATIONAL_CONSTANT
const double GRAVITATIONAL_CONSTANT
OpenMS::Constants::UserParam::OPENPEPXL_TARGET_DECOY_ALPHA
const std::string OPENPEPXL_TARGET_DECOY_ALPHA
OpenMS::Constants::CAL_PER_JOULE
const double CAL_PER_JOULE
OpenMS::Constants::ELECTRON_MASS
const double ELECTRON_MASS
OpenMS::Constants::EPSILON
double EPSILON
OpenMS::Constants::GAS_CONSTANT
const double GAS_CONSTANT
OpenMS::Constants::FINE_STRUCTURE_CONSTANT
const double FINE_STRUCTURE_CONSTANT
OpenMS::Constants::F
const double F
OpenMS::Constants::UserParam::OPENPEPXL_XL_POS2_PROT
const std::string OPENPEPXL_XL_POS2_PROT
OpenMS::Constants::NA
const double NA
OpenMS::Constants::UserParam::OPENPEPXL_XL_TYPE
const std::string OPENPEPXL_XL_TYPE
OpenMS::Constants::E
const double E
Euler&#39;s number - base of the natural logarithm.
OpenMS::Constants::UserParam::OPENPEPXL_BETA_PEPEV_POST
const std::string OPENPEPXL_BETA_PEPEV_POST
OpenMS::Constants::UserParam::OPENPEPXL_SCORE
const std::string OPENPEPXL_SCORE
OpenMS::Constants::UserParam::DELTA_SCORE
const std::string DELTA_SCORE
OpenMS::Constants::ELECTRON_MASS_U
const double ELECTRON_MASS_U
OpenMS::Constants::UserParam::XFDR_FDR
const std::string XFDR_FDR
OpenMS::Constants::BOHR_RADIUS
const double BOHR_RADIUS
OpenMS::Constants::UserParam::FRAGMENT_ANNOTATION_USERPARAM
const std::string FRAGMENT_ANNOTATION_USERPARAM
OpenMS::Constants::UserParam::PRECURSOR_ASSIGNMENT_CORRECTION
const std::string PRECURSOR_ASSIGNMENT_CORRECTION
OpenMS::Constants::NEUTRON_MASS
const double NEUTRON_MASS
OpenMS::Constants::UserParam::OPENPEPXL_BETA_PEPEV_END
const std::string OPENPEPXL_BETA_PEPEV_END
OpenMS::Constants::AVOGADRO
const double AVOGADRO
OpenMS::Constants::h
const double h
OpenMS::Constants::ELEMENTARY_CHARGE
const double ELEMENTARY_CHARGE