| OpenMS 2.5.0

SILACLabeler Member List

This is the complete list of members for SILACLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification) const | SILACLabeler | protected
applyLabelToProteinHit_(SimTypes::FeatureMapSim &protein_hit, const String &arginine_label, const String &lysine_label) const | SILACLabeler | protected
BaseLabeler() | BaseLabeler |
canModificationBeApplied_(const String &modification_id, const String &aa) const | SILACLabeler | protected
channel_description_ | BaseLabeler | protected
check_defaults_ | DefaultParamHandler | protected
consensus_ | BaseLabeler | protected
create() | SILACLabeler | inline static
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getChannelIntensityName(const Size channel_index) const | BaseLabeler |
getConsensus() | BaseLabeler |
getDefaultParameters() const | BaseLabeler | virtual
getDefaults() const | DefaultParamHandler |
getDescription() const | BaseLabeler |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getProductName() | SILACLabeler | inline static
getSubsections() const | DefaultParamHandler |
getUnmodifiedSequence_(const Feature &feature, const String &arginine_label, const String &lysine_label) const | SILACLabeler | protected
heavy_channel_arginine_label_ | SILACLabeler | protected
heavy_channel_lysine_label_ | SILACLabeler | protected
HEAVY_FEATURE_MAPID_ | SILACLabeler | private static
LIGHT_FEATURE_MAPID_ | SILACLabeler | private static
medium_channel_arginine_label_ | SILACLabeler | protected
medium_channel_lysine_label_ | SILACLabeler | protected
MEDIUM_FEATURE_MAPID_ | SILACLabeler | private static
mergeAllChannelFeatures_(Feature &heavy_channel_feature, const String &unmodified_feature_sequence, Map< String, Feature > &light_channel_feature_index, Map< String, Feature > &medium_channel_feature_index) const | SILACLabeler | protected
mergeFeatures_(Feature &labeled_channel_feature, const String &unmodified_sequence, Map< String, Feature > &unlabeled_features_index, Int index_channel_id, Int labeled_channel_id) const | SILACLabeler | protected
mergeProteinAccessions_(Feature &target, const Feature &source) const | BaseLabeler | protected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps) | BaseLabeler | protected
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) override | SILACLabeler | virtual
postDigestHook(SimTypes::FeatureMapSimVector &) override | SILACLabeler | virtual
postIonizationHook(SimTypes::FeatureMapSimVector &) override | SILACLabeler | virtual
postRawMSHook(SimTypes::FeatureMapSimVector &) override | SILACLabeler | virtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) override | SILACLabeler | virtual
postRTHook(SimTypes::FeatureMapSimVector &) override | SILACLabeler | virtual
preCheck(Param &) const override | SILACLabeler | virtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features) | BaseLabeler | protected
registerChildren() | BaseLabeler | static
rng_ | BaseLabeler | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng) | BaseLabeler | virtual
setUpHook(SimTypes::FeatureMapSimVector &) override | SILACLabeler | virtual
SILACLabeler() | SILACLabeler |
subsections_ | DefaultParamHandler | protected
updateMembers_() override | SILACLabeler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~BaseLabeler() override | BaseLabeler |
~DefaultParamHandler() | DefaultParamHandler | virtual
~SILACLabeler() override | SILACLabeler |