| OpenMS 2.5.0

### - e -

- E_wrt_h() : EmgGradientDescent
- E_wrt_mu() : EmgGradientDescent
- E_wrt_sigma() : EmgGradientDescent
- E_wrt_tau() : EmgGradientDescent
- edgesBegin() : TOPPASScene
- edgesEnd() : TOPPASScene
- edit() : ParamTree
- editCurrentItem() : TOPPASInputFilesDialog
- editMetadata() : TOPPViewBase
- editParam() : TOPPASToolVertex
- editText() : Annotation1DItem
- EDTAFile() : EDTAFile
- efficient_replace_and_optimise() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- EGHFitter1D() : EGHFitter1D
- EGHFitterFunctor() : EGHFitter1D::EGHFitterFunctor
- EGHModel() : EGHModel
- EGHTraceFitter() : EGHTraceFitter
- EGHTraceFunctor() : EGHTraceFitter::EGHTraceFunctor
- EgmFitterFunctor() : EmgFitter1D::EgmFitterFunctor
- Element() : Element
- ElementDB() : ElementDB
- ElementNotFound() : ElementNotFound
- elementsFromString_() : FeatureFindingMetabo
- elutionModelFit() : EmgScoring
- ElutionModelFitter() : ElutionModelFitter
- ElutionPeakDetection() : ElutionPeakDetection
- emg_point() : EmgGradientDescent , EmgGradientDescent_friend
- EmgFitter1D() : EmgFitter1D
- EmgGradientDescent() : EmgGradientDescent
- EmgGradientDescent_friend() : EmgGradientDescent_friend
- EmgModel() : EmgModel
- EMGPreProcess_() : PeakIntegrator
- EmgScoring() : EmgScoring
- emitChanged() : TOPPASEdge
- emitToolStarted() : TOPPASToolVertex
- EmpiricalFormula() : EmpiricalFormula
- empty() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , CVTermList , CVTermListInterface , FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector > , File , HashGrid< Cluster > , IMSIsotopeDistribution , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , MetaInfo , MSExperiment , NASequence , OnDiscMSExperiment , Param , PeptideIdentification , QCBase::SpectraMap , SpectrumLookup
- enable_() : ToolsDialog
- enableFeatureNumber() : Spectrum2DGoToDialog
- enableLogging_() : TOPPBase
- enableTransition() : HiddenMarkovModel
- enableTransition_() : HiddenMarkovModel
- encloses() : _Region< __K, _Val, _SubVal, _Acc, _Cmp > , ConvexHull2D , DBoundingBox< D > , DRange< D > , Feature
- encode() : Base64
- encodeCompositionVector() : LibSVMEncoder
- encodeCompositionVectors() : LibSVMEncoder
- encodeIntegers() : Base64
- encodeLibSVMProblem() : LibSVMEncoder
- encodeLibSVMProblemWithCompositionAndLengthVectors() : LibSVMEncoder
- encodeLibSVMProblemWithCompositionLengthAndWeightVectors() : LibSVMEncoder
- encodeLibSVMProblemWithCompositionVectors() : LibSVMEncoder
- encodeLibSVMProblemWithOligoBorderVectors() : LibSVMEncoder
- encodeLibSVMVector() : LibSVMEncoder
- encodeLibSVMVectors() : LibSVMEncoder
- encodeNP() : MSNumpressCoder
- encodeNPRaw() : MSNumpressCoder
- encodeOligo() : LibSVMEncoder
- encodeOligoBorders() : LibSVMEncoder
- encodeProblemWithOligoBorderVectors() : LibSVMEncoder
- encodeStrings() : Base64
- end() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , EmpiricalFormula , HashGrid< Cluster > , IsotopeDistribution , IsotopeWaveletTransform< PeakType >::TransSpectrum , MassTrace , MatchedIterator< CONT_T, TRAIT, CONST_T > , Histogram< ValueType, BinSizeType > , MSExperiment , NASequence , Param , RibonucleotideDB , TextFile , XCorrArrayType
- endElement() : ConsensusXMLFile , CVMappingFile , FeatureXMLFile , IdXMLFile , MascotXMLHandler , MzDataHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , ParamXMLHandler , PTMXMLHandler , SemanticValidator , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , XMLHandler , XQuestResultXMLHandler , OMSSAXMLFile , PepXMLFile , PepXMLFileMascot , ProtXMLFile , QcMLFile , XTandemXMLFile
- endEnzyme() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- EndParsingSoftly() : XMLHandler::EndParsingSoftly
- endPos() : TOPPASEdge
- endProgress() : GUIProgressLoggerImpl , ProgressLogger , ProgressLogger::ProgressLoggerImpl
- endResidue() : ResidueDB
- endRun_() : MascotRemoteQuery
- enforceEncoding_() : XMLFile
- EnhancedTabBar() : EnhancedTabBar
- EnhancedWorkspace() : EnhancedWorkspace
- enhancedWorkspaceWindowChanged() : TOPPViewBase
- enlarge() : DBoundingBox< D >
- enqueueProcess() : TOPPASScene
- ensureAnnotationsWithinDataRange_() : Spectrum1DCanvas
- ensureConvexHulls_() : FeatureFinderIdentificationAlgorithm
- ensureLastChar() : String , StringUtils
- ensureMapsAreFilled_() : CachedSwathFileConsumer , FullSwathFileConsumer , MzMLSwathFileConsumer , RegularSwathFileConsumer
- ensureUniqueId() : UniqueIdInterface
- ensureWithinDataRange() : Annotation1DCaret , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem , Annotation1DTextItem
- enterEvent() : SpectrumCanvas , TOPPASTreeView , TOPPASWidget
- entirePipelineFinished() : TOPPASScene
- enumerateCrossLinksAndMasses() : OPXLHelper
- enumToName() : MZTrafoModel
- EnzymaticDigestion() : EnzymaticDigestion
- EnzymaticDigestionLogModel() : EnzymaticDigestionLogModel
- Epifany() : Epifany
- equal_() : XMLHandler
- EqualInTolerance() : EqualInTolerance< CompareType >
- equals() : Map< Key, T >
- erase() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT > , HashGrid< Cluster > , IMSAlphabet
- erase_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- erase_match_list() : SHFeature
- erase_MZ_cluster_element() : ProcessData
- erase_MZ_LIST_element() : ProcessData
- eraseMinDistance_() : GridBasedClustering< Metric >
- error() : XMLHandler , XMLValidator
- errorIfAlreadyExists() : ExperimentalDesign
- errorString() : XMLHandler
- estimate_() : SignalToNoiseEstimator< Container >
- estimateBackground() : PeakIntegrator
- estimateBackground_() : PeakIntegrator
- estimateEmgParameters() : EmgGradientDescent
- estimateForFragmentFromDNAWeight() : CoarseIsotopePatternGenerator
- estimateForFragmentFromPeptideWeight() : CoarseIsotopePatternGenerator
- estimateForFragmentFromPeptideWeightAndS() : CoarseIsotopePatternGenerator
- estimateForFragmentFromRNAWeight() : CoarseIsotopePatternGenerator
- estimateForFragmentFromWeightAndComp() : CoarseIsotopePatternGenerator
- estimateFromDNAWeight() : CoarseIsotopePatternGenerator
- estimateFromPeptideWeight() : CoarseIsotopePatternGenerator
- estimateFromPeptideWeightAndS() : CoarseIsotopePatternGenerator
- estimateFromRNAWeight() : CoarseIsotopePatternGenerator
- estimateFromWeightAndComp() : CoarseIsotopePatternGenerator , EmpiricalFormula
- estimateFromWeightAndCompAndS() : CoarseIsotopePatternGenerator , EmpiricalFormula
- estimateFWHM() : MassTrace
- estimateMedianChromatographicFWHM_() : UTILProteomicsLFQ
- estimateNoise() : SignalToNoiseEstimatorMedianRapid
- estimateNoiseFromRandomMS1Scans() : TOPPViewBase
- estimatePeakWidth() : PeakPickerCWT
- estimatePrecursorWeight_() : CompNovoIdentification
- estimateRTRange() : OpenSwathHelper
- estimateType() : PeakTypeEstimator
- estimateUntrainedTransitions() : HiddenMarkovModel
- EuclideanSimilarity() : EuclideanSimilarity
- eval() : BSpline2d , CubicSpline2d , GaussFitter , GaussFitter::GaussFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , QuadraticRegression , SplineInterpolatedPeaks::Navigator , SplinePackage , TransformationModelInterpolated::Interpolator
- evaluate() : GridSearch< TupleTypes > , HiddenMarkovModel , MapAlignmentEvaluationAlgorithm , MapAlignmentEvaluationAlgorithmPrecision , MapAlignmentEvaluationAlgorithmRecall , TransformationModel , TransformationModelBSpline , TransformationModelInterpolated , TransformationModelLinear , TransformationModelLowess
- evaluateEGH_() : EGHModel
- event() : QApplicationTOPP
- examine_edge() : IDBoostGraph::dfs_ccsplit_visitor
- execQuery() : MascotRemoteQuery
- executeBindStatement() : SqliteConnector
- executeStatement() : SqliteConnector
- executionFinished() : TOPPASToolVertex
- exist() : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType >
- exists() : ControlledVocabulary , File , IDFilter::GetMatchingItems< HitType, Entry > , MetaInfo , MultiGradient , Param
- exists_() : ParamEditorDelegate
- existsRun() : QcMLFile
- existsRunQualityParameter() : QcMLFile
- existsSet() : QcMLFile
- existsSetQualityParameter() : QcMLFile
- expandPrefix_() : LogStreamBuf
- expandToBoundingBox() : ConvexHull2D
- expectList_() : XMLHandler
- ExperimentalDesign() : ExperimentalDesign
- ExperimentalSettings() : ExperimentalSettings
- ExperimentalSettingsVisualizer() : ExperimentalSettingsVisualizer
- exportAsImage() : TOPPASBase
- exportAttachment() : QcMLFile
- exportConsensusMapToMzTab() : MzTab
- exportDBSearchParameters_() : IdentificationDataConverter
- exportEntries_() : SpectraIdentificationViewWidget
- exportFeatureMapToMzTab() : MzTab
- exportIdentificationsToMzTab() : MzTab
- exportIDs() : IdentificationDataConverter
- exportIDstats() : QcMLFile
- exportMSRunInformation_() : IdentificationDataConverter
- exportMzTab() : IdentificationDataConverter
- exportMzTab_() : AccurateMassSearchEngine , MetaboliteSpectralMatching
- exportParentMoleculeToMzTab_() : IdentificationDataConverter
- exportPeptideOrOligoToMzTab_() : IdentificationDataConverter
- exportQP() : QcMLFile
- exportQPs() : QcMLFile
- exportQueryMatchToMzTab_() : IdentificationDataConverter
- exportStepsAndScoresToMzTab_() : IdentificationDataConverter
- extend() : DRange< D >
- extendBox_() : IsotopeWaveletTransform< PeakType >
- extendClustersY() : GridBasedClustering< Metric >
- ExtendedIsotopeFitter1D() : ExtendedIsotopeFitter1D
- ExtendedIsotopeModel() : ExtendedIsotopeModel
- extendMassTrace_() : FeatureFinderAlgorithmPicked
- extendMassTraces_() : FeatureFinderAlgorithmPicked
- extract_elution_peaks() : ProcessData
- extract_id_() : ChromatogramExtractor
- extract_MS2_elution_features() : FTPeakDetectController
- extract_scan_index() : SiriusMzTabWriter
- extract_value_bartlett() : ChromatogramExtractor
- extract_value_tophat() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
- extractAndTransformScores() : PosteriorErrorProbabilityModel
- extractAnnotationFromSiriusFile_() : SiriusFragmentAnnotation
- extractChannels() : IsobaricChannelExtractor
- extractChromatograms() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
- extractComponents_() : AbsoluteQuantitation
- extractCoverageStrings() : TOPPViewIdentificationViewBehavior
- extractDateTime_() : XQuestResultXMLHandler
- extractDouble() : StringUtils
- extractFragmentsFromSpectra() : ClusteredMS2ConsensusSpectrum
- extractIndexPairsFromBrackets_() : MzTabFile
- extractIntensities_() : ConfidenceScoring
- extractIntensityVectors() : ConsensusMapNormalizerAlgorithmQuantile
- extractLabelSet() : MultiplexDeltaMassesGenerator
- extractMarkerIons() : RNPxlMarkerIonExtractor
- extractMetaboTargetedAssay() : MetaboTargetedAssay
- extractMetaboTargetedAssayFragmentAnnotation() : MetaboTargetedAssay
- extractMIDFromSiriusMS_() : SiriusFragmentAnnotation
- extractModificationListFromAASequence() : MzTab
- extractNativeIDFromSiriusMS_() : SiriusFragmentAnnotation
- extractNumberOfSubSamples_() : MzTabFile
- extractNumPeptides_() : MzTabFile
- extractNumPeptidesDistinct_() : MzTabFile
- extractNumPeptidesUnambiguous_() : MzTabFile
- extractParamsFromLine_() : MRMFeaturePickerFile
- extractPeaks() : FeatureFinderAlgorithmSHCtrl , FIAMSDataProcessor
- extractPeptideModifications_() : MzTabFile
- extractPeptideSequences() : IDFilter
- extractProteinAccession_() : MzTabFile
- extractProteinAccessionsSet() : PeptideHit
- extractRunFromLine_() : AbsoluteQuantitationStandardsFile
- extractScanNumber() : SpectrumLookup
- extractSeqAndRt_() : MapAlignmentAlgorithmTreeGuided
- extractSiriusFragmentAnnotationMapping() : SiriusFragmentAnnotation
- extractSpectra() : TargetedSpectraExtractor
- extractTrainingSet() : EmgGradientDescent , EmgGradientDescent_friend
- extractXICs() : MetaProSIPXICExtraction
- extractXICsOfIsotopeTraces() : MetaProSIPXICExtraction