| OpenMS 2.5.0

AASequence Member List

This is the complete list of members for AASequence, including all inherited members.

AASequence() | AASequence |
AASequence(const AASequence &)=default | AASequence |
AASequence(AASequence &&) noexcept=default | AASequence |
begin() | AASequence | inline
begin() const | AASequence | inline
c_term_mod_ | AASequence | protected
empty() const | AASequence |
end() | AASequence | inline
end() const | AASequence | inline
fromString(const String &s, bool permissive=true) | AASequence | static
fromString(const char *s, bool permissive=true) | AASequence | static
getAAFrequencies(Map< String, Size > &frequency_table) const | AASequence |
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const | AASequence |
getCTerminalModification() const | AASequence |
getCTerminalModificationName() const | AASequence |
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) const | AASequence |
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const | AASequence |
getNTerminalModification() const | AASequence |
getNTerminalModificationName() const | AASequence |
getPrefix(Size index) const | AASequence |
getResidue(Size index) const | AASequence |
getSubsequence(Size index, UInt number) const | AASequence |
getSuffix(Size index) const | AASequence |
has(const Residue &residue) const | AASequence |
hasCTerminalModification() const | AASequence |
hasNTerminalModification() const | AASequence |
hasPrefix(const AASequence &peptide) const | AASequence |
hasSubsequence(const AASequence &peptide) const | AASequence |
hasSuffix(const AASequence &peptide) const | AASequence |
isModified() const | AASequence |
n_term_mod_ | AASequence | protected
operator!=(const AASequence &rhs) const | AASequence |
operator+(const AASequence &peptide) const | AASequence |
operator+(const Residue *residue) const | AASequence |
operator+=(const AASequence &) | AASequence |
operator+=(const Residue *) | AASequence |
operator<(const AASequence &rhs) const | AASequence |
operator<<(std::ostream &os, const AASequence &peptide) | AASequence | friend
operator=(const AASequence &)=default | AASequence |
operator=(AASequence &&)=default | AASequence |
operator==(const AASequence &rhs) const | AASequence |
operator>>(std::istream &is, const AASequence &peptide) | AASequence | friend
operator[](Size index) const | AASequence |
parseModRoundBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity) | AASequence | protected static
parseModSquareBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity) | AASequence | protected static
parseString_(const String &peptide, AASequence &aas, bool permissive=true) | AASequence | protected static
peptide_ | AASequence | protected
setCTerminalModification(const String &modification) | AASequence |
setCTerminalModification(const ResidueModification *modification) | AASequence |
setModification(Size index, const String &modification) | AASequence |
setModification(Size index, const Residue *modification) | AASequence | inline
setNTerminalModification(const String &modification) | AASequence |
setNTerminalModification(const ResidueModification *modification) | AASequence |
size() const | AASequence |
toBracketString(bool integer_mass=true, bool mass_delta=false, const std::vector< String > &fixed_modifications=std::vector< String >()) const | AASequence |
toString() const | AASequence |
toUniModString() const | AASequence |
toUnmodifiedString() const | AASequence |
~AASequence() | AASequence | virtual