| OpenMS 2.5.0

ConsensusIDAlgorithmPEPIons.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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31 // $Maintainer: Hendrik Weisser $
32 // $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h>
38
39 namespace OpenMS
40 {
48 class OPENMS_DLLAPI ConsensusIDAlgorithmPEPIons :
49 public ConsensusIDAlgorithmSimilarity
50 {
51 public:
53 ConsensusIDAlgorithmPEPIons();
54
55 private:
57 double mass_tolerance_;
58
60 Size min_shared_;
61
63 ConsensusIDAlgorithmPEPIons(const ConsensusIDAlgorithmPEPIons&);
64
66 ConsensusIDAlgorithmPEPIons& operator=(const ConsensusIDAlgorithmPEPIons&);
67
69 void updateMembers_() override;
70
72 double getSimilarity_(AASequence seq1, AASequence seq2) override;
73
74 };
75
76 } // namespace OpenMS
77
ConsensusIDAlgorithmSimilarity.h
OpenMS::ConsensusIDAlgorithmSimilarity
Abstract base class for ConsensusID algorithms that take peptide similarity into account.
Definition: ConsensusIDAlgorithmSimilarity.h:54
OpenMS::ConsensusIDAlgorithmPEPIons
Calculates a consensus from multiple ID runs based on PEPs and shared ions.
Definition: ConsensusIDAlgorithmPEPIons.h:48
OpenMS::AASequence
Representation of a peptide/protein sequence.
Definition: AASequence.h:113
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::ConsensusIDAlgorithmPEPIons::mass_tolerance_
double mass_tolerance_
Fragment mass tolerance (for "PEPIons_")
Definition: ConsensusIDAlgorithmPEPIons.h:57
OpenMS::ConsensusIDAlgorithmPEPIons::min_shared_
Size min_shared_
Min. number of shared fragments (for "PEPIons")
Definition: ConsensusIDAlgorithmPEPIons.h:60
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127