| OpenMS 2.5.0

SimpleTSGXLMS Member List

This is the complete list of members for SimpleTSGXLMS, including all inherited members.

add_a_ions_ | SimpleTSGXLMS | protected
add_abundant_immonium_ions_ | SimpleTSGXLMS | protected
add_b_ions_ | SimpleTSGXLMS | protected
add_c_ions_ | SimpleTSGXLMS | protected
add_charges_ | SimpleTSGXLMS | protected
add_first_prefix_ion_ | SimpleTSGXLMS | protected
add_isotopes_ | SimpleTSGXLMS | protected
add_k_linked_ions_ | SimpleTSGXLMS | protected
add_losses_ | SimpleTSGXLMS | protected
add_precursor_peaks_ | SimpleTSGXLMS | protected
add_x_ions_ | SimpleTSGXLMS | protected
add_y_ions_ | SimpleTSGXLMS | protected
add_z_ions_ | SimpleTSGXLMS | protected
addKLinkedIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int charge) const | SimpleTSGXLMS | protected virtual
addLinearPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge=1, Size link_pos_2=0) const | SimpleTSGXLMS | protected virtual
addLosses_(std::vector< SimplePeak > &spectrum, double mono_weight, int charge, LossIndex &losses) const | SimpleTSGXLMS | protected virtual
addPrecursorPeaks_(std::vector< SimplePeak > &spectrum, double precursor_mass, int charge) const | SimpleTSGXLMS | protected virtual
addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge, Size link_pos_2=0) const | SimpleTSGXLMS | protected virtual
addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, LossIndex &losses_peptide2, int charge) const | SimpleTSGXLMS | protected virtual
check_defaults_ | DefaultParamHandler | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
getBackwardLosses_(AASequence &peptide) const | SimpleTSGXLMS | protected
getDefaults() const | DefaultParamHandler |
getForwardLosses_(AASequence &peptide) const | SimpleTSGXLMS | protected
getLinearIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, int charge=1, Size link_pos_2=0) const | SimpleTSGXLMS | virtual
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int mincharge, int maxcharge, Size link_pos_2=0) const | SimpleTSGXLMS | virtual
getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, int mincharge, int maxcharge) const | SimpleTSGXLMS | virtual
loss_db_ | SimpleTSGXLMS | protected
loss_H2O_ | SimpleTSGXLMS | protected
loss_NH3_ | SimpleTSGXLMS | protected
max_isotope_ | SimpleTSGXLMS | protected
operator=(const SimpleTSGXLMS &tsg) | SimpleTSGXLMS |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
pre_int_ | SimpleTSGXLMS | protected
pre_int_H2O_ | SimpleTSGXLMS | protected
pre_int_NH3_ | SimpleTSGXLMS | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
SimpleTSGXLMS() | SimpleTSGXLMS |
SimpleTSGXLMS(const SimpleTSGXLMS &source) | SimpleTSGXLMS |
subsections_ | DefaultParamHandler | protected
updateMembers_() override | SimpleTSGXLMS | virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~SimpleTSGXLMS() override | SimpleTSGXLMS |