| OpenMS 2.5.0

Public Member Functions | Static Public Attributes | Private Attributes | Static Private Attributes | List of all members
MS2Info Class Reference

`#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Info.h>`

## Public Member Functions

| ~MS2Info ()
| MS2Info ()
| MS2Info (int)
| MS2Info (std::string, std::string, float)
| MS2Info (std::string, std::string, int, float)
| MS2Info (std::string, std::string, float, int, int)
| MS2Info (const MS2Info &)
| MS2Info (const MS2Info *)
MS2Info & | operator= (const MS2Info &)
bool | operator== (const MS2Info &)
MS2Info & | operator<= (const MS2Info &)
MS2Info & | operator>= (const MS2Info &)
MS2Info & | operator< (const MS2Info &)
MS2Info & | operator> (const MS2Info &)
void | add_modification (int, double)
std::map< int, double >::iterator | get_Modification_list_start ()
std::map< int, double >::iterator | get_Modification_list_end ()
std::map< int, double >::iterator | find_Modification (int pos)
std::map< int, double > * | get_Modification_list ()
bool | check_MODIFICATION ()
void | set_THEO_MASS_from_SQ ()
double | get_THEO_MZ ()
void | set_FULL_SQ ()
void | set_SQ (std::string in)
void | show_info ()
bool | get_PROTEO_TYPE ()
int | get_TRYPTIC_STATE ()
bool | compare_AC (std::string)
bool | search_AC_pattern (std::string)
std::string | get_SQ ()
std::string | get_MOD_SQ ()
std::string | get_TOTAL_SQ ()
std::string | get_AC ()
std::vector< std::string > | get_ALL_AC ()
std::vector< std::string >::iterator | get_ALL_AC_START ()
std::vector< std::string >::iterator | get_ALL_AC_END ()
bool | find_AC (std::string)
void | set_AC (std::string)
float | get_PEP_PROB ()
void | set_PEP_PROB (float in)
double | get_MONO_MZ ()
void | set_MONO_MZ (double)
double | get_NEUTRAL_MR ()
void | set_NEUTRAL_MR (double)
int | get_CHRG ()
void | set_CHRG (int in)
int | get_SCAN ()
int | get_SCAN_START ()
void | set_SCAN_START (int in)
int | get_SCAN_END ()
void | set_SCAN_END (int in)
int | get_ID ()
double | get_DELTA_CN ()
void | set_DELTA_CN (double in)
double | get_XCORR ()
void | set_XCORR (double in)
void | set_MS2_TYPE_TAG (std::string in)
std::string | get_MS2_TYPE_TAG ()
double | getRetentionTime ()
void | setRetentionTime (double in)
double | get_MONO_AA_MASS (int)
std::string | get_PREV_AA ()
void | set_PREV_AA (std::string in)

## Static Public Attributes

static const double | mono_mass [26]
static const char | AA [20]

## Private Attributes

int | ID
std::string | SQ
std::string | FULL_SQ
std::string | PREV_AA
std::vector< std::string > | AC
std::string | MS2_TYPE_TAG
float | PEP_PROB
double | XCORR
double | DELTA_CN
double | MONO_MZ
double | THEO_MZ
double | NEUTRAL_MR
int | CHRG
int | SCAN_START
int | SCAN_END
double | TR
std::map< int, double > | MOD_LIST

## Static Private Attributes

static const double | _MONO_H
static const double | _MONO_O

## Constructor & Destructor Documentation

## ◆ ~MS2Info()

~MS2Info | ( |  | ) |

## ◆ MS2Info() [1/7]

MS2Info | ( |  | ) |

## ◆ MS2Info() [2/7]

MS2Info | ( | int |  | ) |

## ◆ MS2Info() [3/7]

MS2Info | ( | std::string | ,
|  | std::string | ,
|  | float |
| ) |  |

## ◆ MS2Info() [4/7]

MS2Info | ( | std::string | ,
|  | std::string | ,
|  | int | ,
|  | float |
| ) |  |

## ◆ MS2Info() [5/7]

MS2Info | ( | std::string | ,
|  | std::string | ,
|  | float | ,
|  | int | ,
|  | int |
| ) |  |

## ◆ MS2Info() [6/7]

MS2Info | ( | const MS2Info & |  | ) |

## ◆ MS2Info() [7/7]

MS2Info | ( | const MS2Info * |  | ) |

## Member Function Documentation

## ◆ add_modification()

void add_modification | ( | int | ,
|  | double |
| ) |  |

## ◆ check_MODIFICATION()

bool check_MODIFICATION | ( |  | ) |

## ◆ compare_AC()

bool compare_AC | ( | std::string |  | ) |

## ◆ find_AC()

bool find_AC | ( | std::string |  | ) |

## ◆ find_Modification()

std::map<int, double>::iterator find_Modification | ( | int | pos | ) |

## ◆ get_AC()

std::string get_AC | ( |  | ) |

## ◆ get_ALL_AC()

std::vector<std::string> get_ALL_AC | ( |  | ) |

## ◆ get_ALL_AC_END()

std::vector<std::string>::iterator get_ALL_AC_END | ( |  | ) |

## ◆ get_ALL_AC_START()

std::vector<std::string>::iterator get_ALL_AC_START | ( |  | ) |

## ◆ get_CHRG()

int get_CHRG | ( |  | ) |

## ◆ get_DELTA_CN()

double get_DELTA_CN | ( |  | ) |

## ◆ get_ID()

int get_ID | ( |  | ) |

## ◆ get_MOD_SQ()

std::string get_MOD_SQ | ( |  | ) |

## ◆ get_Modification_list()

std::map<int, double>* get_Modification_list | ( |  | ) |

## ◆ get_Modification_list_end()

std::map<int, double>::iterator get_Modification_list_end | ( |  | ) |

## ◆ get_Modification_list_start()

std::map<int, double>::iterator get_Modification_list_start | ( |  | ) |

## ◆ get_MONO_AA_MASS()

double get_MONO_AA_MASS | ( | int |  | ) |

## ◆ get_MONO_MZ()

double get_MONO_MZ | ( |  | ) |

## ◆ get_MS2_TYPE_TAG()

std::string get_MS2_TYPE_TAG | ( |  | ) |

## ◆ get_NEUTRAL_MR()

double get_NEUTRAL_MR | ( |  | ) |

## ◆ get_PEP_PROB()

float get_PEP_PROB | ( |  | ) |

## ◆ get_PREV_AA()

std::string get_PREV_AA | ( |  | ) |

## ◆ get_PROTEO_TYPE()

bool get_PROTEO_TYPE | ( |  | ) |

## ◆ get_SCAN()

int get_SCAN | ( |  | ) |

## ◆ get_SCAN_END()

int get_SCAN_END | ( |  | ) |

## ◆ get_SCAN_START()

int get_SCAN_START | ( |  | ) |

## ◆ get_SQ()

std::string get_SQ | ( |  | ) |

## ◆ get_THEO_MZ()

double get_THEO_MZ | ( |  | ) |

## ◆ get_TOTAL_SQ()

std::string get_TOTAL_SQ | ( |  | ) |

## ◆ get_TRYPTIC_STATE()

int get_TRYPTIC_STATE | ( |  | ) |

## ◆ get_XCORR()

double get_XCORR | ( |  | ) |

## ◆ getRetentionTime()

double getRetentionTime | ( |  | ) |

## ◆ operator<()

MS2Info& operator< | ( | const MS2Info & |  | ) |

## ◆ operator<=()

MS2Info& operator<= | ( | const MS2Info & |  | ) |

## ◆ operator=()

MS2Info& operator= | ( | const MS2Info & |  | ) |

## ◆ operator==()

bool operator== | ( | const MS2Info & |  | ) |

## ◆ operator>()

MS2Info& operator> | ( | const MS2Info & |  | ) |

## ◆ operator>=()

MS2Info& operator>= | ( | const MS2Info & |  | ) |

## ◆ search_AC_pattern()

bool search_AC_pattern | ( | std::string |  | ) |

## ◆ set_AC()

void set_AC | ( | std::string |  | ) |

## ◆ set_CHRG()

void set_CHRG | ( | int | in | ) |

## ◆ set_DELTA_CN()

void set_DELTA_CN | ( | double | in | ) |

## ◆ set_FULL_SQ()

void set_FULL_SQ | ( |  | ) |

## ◆ set_MONO_MZ()

void set_MONO_MZ | ( | double |  | ) |

## ◆ set_MS2_TYPE_TAG()

void set_MS2_TYPE_TAG | ( | std::string | in | ) |

## ◆ set_NEUTRAL_MR()

void set_NEUTRAL_MR | ( | double |  | ) |

## ◆ set_PEP_PROB()

void set_PEP_PROB | ( | float | in | ) |

## ◆ set_PREV_AA()

void set_PREV_AA | ( | std::string | in | ) |

## ◆ set_SCAN_END()

void set_SCAN_END | ( | int | in | ) |

## ◆ set_SCAN_START()

void set_SCAN_START | ( | int | in | ) |

## ◆ set_SQ()

void set_SQ | ( | std::string | in | ) |

## ◆ set_THEO_MASS_from_SQ()

void set_THEO_MASS_from_SQ | ( |  | ) |

## ◆ set_XCORR()

void set_XCORR | ( | double | in | ) |

## ◆ setRetentionTime()

void setRetentionTime | ( | double | in | ) |

## ◆ show_info()

void show_info | ( |  | ) |

## Member Data Documentation

## ◆ _MONO_H

const double _MONO_H

static private

## ◆ _MONO_O

const double _MONO_O

static private

## ◆ AA

const char AA[20]

static

## ◆ AC

std::vector<std::string> AC

private

## ◆ CHRG

int CHRG

private

## ◆ DELTA_CN

double DELTA_CN

private

## ◆ FULL_SQ

std::string FULL_SQ

private

## ◆ ID

int ID

private

## ◆ MOD_LIST

std::map<int, double> MOD_LIST

private

## ◆ mono_mass

const double mono_mass[26]

static

## ◆ MONO_MZ

double MONO_MZ

private

## ◆ MS2_TYPE_TAG

std::string MS2_TYPE_TAG

private

## ◆ NEUTRAL_MR

double NEUTRAL_MR

private

## ◆ PEP_PROB

float PEP_PROB

private

## ◆ PREV_AA

std::string PREV_AA

private

## ◆ SCAN_END

int SCAN_END

private

## ◆ SCAN_START

int SCAN_START

private

## ◆ SQ

std::string SQ

private

## ◆ THEO_MZ

double THEO_MZ

private

## ◆ TR

double TR

private

## ◆ XCORR

double XCORR

private