| OpenMS 2.5.0

TransitionPQPFile.h
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31 // $Maintainer: George Rosenberger $
32 // $Authors: George Rosenberger, Hannes Roest $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h>
38
39 #include <boost/range/algorithm.hpp>
40 #include <boost/range/algorithm_ext/erase.hpp>
41 #include <iostream>
42
43 namespace OpenMS
44 {
45
219 class OPENMS_DLLAPI TransitionPQPFile :
220 public TransitionTSVFile
221 {
222
223 private:
224
232 void readPQPInput_(const char* filename, std::vector<TSVTransition>& transition_list, bool legacy_traml_id = false);
233
239 void writePQPOutput_(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
240
241 public:
242
244 TransitionPQPFile();
246
248 ~TransitionPQPFile() override;
250
257 void convertTargetedExperimentToPQP(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
258
266 void convertPQPToTargetedExperiment(const char* filename, OpenMS::TargetedExperiment& targeted_exp, bool legacy_traml_id = false);
267
275 void convertPQPToTargetedExperiment(const char* filename, OpenSwath::LightTargetedExperiment& targeted_exp, bool legacy_traml_id = false);
276
277 };
278 }
279
280
TransitionTSVFile.h
OpenMS::TransitionTSVFile
This class supports reading and writing of OpenSWATH transition lists.
Definition: TransitionTSVFile.h:144
OpenMS::TransitionPQPFile
This class supports reading and writing of PQP files.
Definition: TransitionPQPFile.h:219
OpenMS::TargetedExperiment
A description of a targeted experiment containing precursor and production ions.
Definition: TargetedExperiment.h:64
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenSwath::LightTargetedExperiment
Definition: TransitionExperiment.h:207