| OpenMS 2.5.0

CrossLinksDB Member List

This is the complete list of members for CrossLinksDB, including all inherited members.

addModification(ResidueModification *new_mod) | ModificationsDB |
CrossLinksDB() | CrossLinksDB | private
CrossLinksDB(const CrossLinksDB &residue_db) | CrossLinksDB | private
findModificationIndex(const String &mod_name) const | ModificationsDB |
getAllSearchModifications(std::vector< String > &modifications) const | CrossLinksDB |
getBestModificationByDiffMonoMass(double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB |
getInstance() | CrossLinksDB | inline static
getModification(Size index) const | ModificationsDB |
getModification(const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB |
getNumberOfModifications() const | ModificationsDB |
has(String modification) const | ModificationsDB |
initializeModificationsDB(OpenMS::String unimod_file="CHEMISTRY/unimod.xml", OpenMS::String psimod_file="CHEMISTRY/PSI-MOD.obo", OpenMS::String xlmod_file="CHEMISTRY/XLMOD.obo") | ModificationsDB | static
is_instantiated_ | ModificationsDB | protected static
isInstantiated() | ModificationsDB | static
modification_names_ | ModificationsDB | protected
mods_ | ModificationsDB | protected
operator=(const CrossLinksDB &aa) | CrossLinksDB | private
readFromOBOFile(const String &filename) | CrossLinksDB |
residuesMatch_(const String &residue, const ResidueModification *origin) const | ModificationsDB | protected
searchModifications(std::set< const ResidueModification *> &mods, const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB |
searchModificationsByDiffMonoMass(std::vector< String > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB |
~CrossLinksDB() override | CrossLinksDB | private