| OpenMS 2.5.0

IDMergerAlgorithm Member List

This is the complete list of members for IDMergerAlgorithm, including all inherited members.

accessionEqual_(const ProteinHit &p1, const ProteinHit &p2) | IDMergerAlgorithm | inline private static
accessionHash_(const ProteinHit &p) | IDMergerAlgorithm | inline private static
check_defaults_ | DefaultParamHandler | protected
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const String &experiment_type) const | IDMergerAlgorithm | private
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const ProteinIdentification &ref, const String &experiment_type) const | IDMergerAlgorithm | private
CMD enum value | ProgressLogger |
collected_protein_hits_ | IDMergerAlgorithm | private
copySearchParams_(const ProteinIdentification &from, ProteinIdentification &to) | IDMergerAlgorithm | private static
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
equal_type typedef | IDMergerAlgorithm | private
error_name_ | DefaultParamHandler | protected
file_origin_to_idx_ | IDMergerAlgorithm | private
filled_ | IDMergerAlgorithm | private
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getNewIdentifier_() const | IDMergerAlgorithm | private
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
hash_type typedef | IDMergerAlgorithm | private
id_ | IDMergerAlgorithm | private
IDMergerAlgorithm(const String &runIdentifier="merged") | IDMergerAlgorithm | explicit
insertProteinIDs_(std::vector< ProteinIdentification > &&old_protRuns) | IDMergerAlgorithm | private
insertRuns(std::vector< ProteinIdentification > &&prots, std::vector< PeptideIdentification > &&peps) | IDMergerAlgorithm |
insertRuns(const std::vector< ProteinIdentification > &prots, const std::vector< PeptideIdentification > &peps) | IDMergerAlgorithm |
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
movePepIDsAndRefProteinsToResultFaster_(std::vector< PeptideIdentification > &&pepIDs, std::vector< ProteinIdentification > &&old_protRuns) | IDMergerAlgorithm | private
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
pep_result_ | IDMergerAlgorithm | private
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
prot_result_ | IDMergerAlgorithm | private
recursion_depth_ | ProgressLogger | protected static
returnResultsAndClear(ProteinIdentification &prots, std::vector< PeptideIdentification > &peps) | IDMergerAlgorithm |
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
type_ | ProgressLogger | mutable protected
updateAndMovePepIDs_(std::vector< PeptideIdentification > &&pepIDs, const std::map< String, Size > &runID_to_runIdx, const std::vector< StringList > &originFiles, bool annotate_origin) | IDMergerAlgorithm | private
updateMembers_() | DefaultParamHandler | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~ProgressLogger() | ProgressLogger |