| OpenMS 2.5.0

ITransition.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <vector>
38 #include <string>
39 #include <boost/shared_ptr.hpp>
40
41 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
42
43 namespace OpenSwath
44 {
45 // Datastructures for Scoring
46 class OPENSWATHALGO_DLLAPI IFeature
47 {
48 public:
49 virtual ~IFeature(){}
50 virtual void getRT(std::vector<double>& rt) const = 0;
51 virtual void getIntensity(std::vector<double>& intens) const = 0;
52 virtual float getIntensity() const = 0;
53 virtual double getRT() const = 0;
54 };
55
56 class OPENSWATHALGO_DLLAPI IMRMFeature
57 {
58 public:
59 virtual ~IMRMFeature(){}
60 virtual boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID) = 0;
61 virtual boost::shared_ptr<OpenSwath::IFeature> getPrecursorFeature(std::string nativeID) = 0;
62 virtual std::vector<std::string> getNativeIDs() const = 0;
63 virtual std::vector<std::string> getPrecursorIDs() const = 0;
64 virtual float getIntensity() const = 0;
65 virtual double getRT() const = 0;
66 virtual size_t size() const = 0;
67 };
68
69 struct OPENSWATHALGO_DLLAPI ITransitionGroup
70 {
71 virtual ~ITransitionGroup() {}
72 virtual std::size_t size() const = 0;
73 virtual std::vector<std::string> getNativeIDs() const = 0;
74 virtual void getLibraryIntensities(std::vector<double>& intensities) const = 0;
75 };
76
77 struct OPENSWATHALGO_DLLAPI ISignalToNoise
78 {
79 virtual ~ISignalToNoise() {}
80 virtual double getValueAtRT(double RT) = 0; // cannot be const due to OpenMS implementation
81 };
82 typedef boost::shared_ptr<ISignalToNoise> ISignalToNoisePtr;
83
84
85 } //end Namespace OpenSwath
86
OpenSwath::IFeature::~IFeature
virtual ~IFeature()
Definition: ITransition.h:49
OpenSwath
Definition: MRMScoring.h:49
OpenSwath::IMRMFeature
Definition: ITransition.h:56
OpenSwath::ISignalToNoise::~ISignalToNoise
virtual ~ISignalToNoise()
Definition: ITransition.h:79
OpenSwath::IMRMFeature::~IMRMFeature
virtual ~IMRMFeature()
Definition: ITransition.h:59
OpenSwath::ISignalToNoisePtr
boost::shared_ptr< ISignalToNoise > ISignalToNoisePtr
Definition: ITransition.h:82
OpenSwath::ISignalToNoise
Definition: ITransition.h:77
OpenSwath::IFeature
Definition: ITransition.h:46
OpenSwath::ITransitionGroup
Definition: ITransition.h:69
OpenSwath::ITransitionGroup::~ITransitionGroup
virtual ~ITransitionGroup()
Definition: ITransition.h:71