| OpenMS 2.5.0

ConfidenceScoring Member List

This is the complete list of members for ConfidenceScoring, including all inherited members.

BimapType typedef | ConfidenceScoring | protected
chooseDecoys_() | ConfidenceScoring | protected
CMD enum value | ProgressLogger |
ConfidenceScoring(bool test_mode_=false) | ConfidenceScoring | inline explicit
current_logger_ | ProgressLogger | mutable protected
decoy_index_ | ConfidenceScoring | protected
endProgress() const | ProgressLogger |
extractIntensities_(BimapType &intensity_map, Size n_transitions, DoubleList &intensities) | ConfidenceScoring | protected
generator_ | ConfidenceScoring | protected
getAssayRT_(const TargetedExperiment::Peptide &assay) | ConfidenceScoring | protected
getLogType() const | ProgressLogger |
glm_ | ConfidenceScoring | protected
GUI enum value | ProgressLogger |
initialize(const TargetedExperiment &library, const Size n_decoys, const Size n_transitions, const TransformationDescription &rt_trafo) | ConfidenceScoring | inline
initializeGlm(double intercept, double rt_coef, double int_coef) | ConfidenceScoring | inline
last_invoke_ | ProgressLogger | mutable protected
library_ | ConfidenceScoring | protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
manhattanDist_(DoubleList x, DoubleList y) | ConfidenceScoring | protected
n_decoys_ | ConfidenceScoring | protected
n_transitions_ | ConfidenceScoring | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const ProgressLogger &other) | ProgressLogger |
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
rand_gen_ | ConfidenceScoring | protected
recursion_depth_ | ProgressLogger | protected static
rt_norm_ | ConfidenceScoring | protected
rt_trafo_ | ConfidenceScoring | protected
scoreAssay_(const TargetedExperiment::Peptide &assay, double feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >()) | ConfidenceScoring | protected
scoreFeature_(Feature &feature) | ConfidenceScoring | protected
scoreMap(FeatureMap &features) | ConfidenceScoring | inline
setLogType(LogType type) const | ProgressLogger |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
transition_map_ | ConfidenceScoring | protected
type_ | ProgressLogger | mutable protected
~ConfidenceScoring() | ConfidenceScoring | inline virtual
~ProgressLogger() | ProgressLogger |