| OpenMS 2.5.0

Residue Member List

This is the complete list of members for Residue, including all inherited members.

addLossFormula(const EmpiricalFormula &) | Residue |
addLossName(const String &name) | Residue |
addNTermLossFormula(const EmpiricalFormula &) | Residue |
addNTermLossName(const String &name) | Residue |
addResidueSet(const String &residue_sets) | Residue |
addSynonym(const String &synonym) | Residue |
AIon enum value | Residue |
average_weight_ | Residue | protected
BIon enum value | Residue |
BIonMinusH20 enum value | Residue |
BIonMinusNH3 enum value | Residue |
CIon enum value | Residue |
CTerminal enum value | Residue |
formula_ | Residue | protected
Full enum value | Residue |
gb_bb_l_ | Residue | protected
gb_bb_r_ | Residue | protected
gb_sc_ | Residue | protected
getAverageWeight(ResidueType res_type=Full) const | Residue |
getBackboneBasicityLeft() const | Residue |
getBackboneBasicityRight() const | Residue |
getFormula(ResidueType res_type=Full) const | Residue |
getInternalToAIon() | Residue | inline static
getInternalToBIon() | Residue | inline static
getInternalToCIon() | Residue | inline static
getInternalToCTerm() | Residue | inline static
getInternalToFull() | Residue | inline static
getInternalToNTerm() | Residue | inline static
getInternalToXIon() | Residue | inline static
getInternalToYIon() | Residue | inline static
getInternalToZIon() | Residue | inline static
getLossFormulas() const | Residue |
getLossNames() const | Residue |
getLowMassIons() const | Residue |
getModification() const | Residue |
getModificationName() const | Residue |
getMonoWeight(ResidueType res_type=Full) const | Residue |
getName() const | Residue |
getNTermLossFormulas() const | Residue |
getNTermLossNames() const | Residue |
getOneLetterCode() const | Residue |
getPiValue() const | Residue |
getPka() const | Residue |
getPkb() const | Residue |
getPkc() const | Residue |
getResidueSets() const | Residue |
getResidueTypeName(const ResidueType res_type) | Residue | static
getShortName() const | Residue |
getSideChainBasicity() const | Residue |
getSynonyms() const | Residue |
getThreeLetterCode() const | Residue |
hasNeutralLoss() const | Residue |
hasNTermNeutralLosses() const | Residue |
Internal enum value | Residue |
internal_formula_ | Residue | protected
internal_to_a_monoweight_ | Residue | protected
internal_to_b_monoweight_ | Residue | protected
internal_to_c_monoweight_ | Residue | protected
internal_to_cterm_monoweight_ | Residue | protected
internal_to_full_monoweight_ | Residue | protected
internal_to_nterm_monoweight_ | Residue | protected
internal_to_x_monoweight_ | Residue | protected
internal_to_y_monoweight_ | Residue | protected
internal_to_z_monoweight_ | Residue | protected
isInResidueSet(const String &residue_set) | Residue |
isModified() const | Residue |
loss_average_weight_ | Residue | protected
loss_formulas_ | Residue | protected
loss_mono_weight_ | Residue | protected
loss_names_ | Residue | protected
low_mass_ions_ | Residue | protected
modification_ | Residue | protected
mono_weight_ | Residue | protected
name_ | Residue | protected
NonIdentified enum value | Residue |
NTerm_loss_formulas_ | Residue | protected
NTerm_loss_names_ | Residue | protected
NTerminal enum value | Residue |
one_letter_code_ | Residue | protected
operator!=(const Residue &residue) const | Residue |
operator!=(char one_letter_code) const | Residue |
operator<<(std::ostream &os, const Residue &residue) | Residue | friend
operator=(const Residue &)=default | Residue |
operator=(Residue &&) &=default | Residue |
operator==(const Residue &residue) const | Residue |
operator==(char one_letter_code) const | Residue |
pka_ | Residue | protected
pkb_ | Residue | protected
pkc_ | Residue | protected
Precursor enum value | Residue |
Residue() | Residue |
Residue(const Residue &)=default | Residue |
Residue(Residue &&)=default | Residue |
Residue(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula) | Residue |
residue_sets_ | Residue | protected
ResidueDB class | Residue | friend
ResidueType enum name | Residue |
residueTypeToIonLetter(const ResidueType &res_type) | Residue | static
setAverageWeight(double weight) | Residue |
setBackboneBasicityLeft(double gb_bb_l) | Residue |
setBackboneBasicityRight(double gb_bb_r) | Residue |
setFormula(const EmpiricalFormula &formula) | Residue |
setLossFormulas(const std::vector< EmpiricalFormula > &) | Residue |
setLossNames(const std::vector< String > &name) | Residue |
setLowMassIons(const std::vector< EmpiricalFormula > &low_mass_ions) | Residue |
setModification(const String &name) | Residue |
setModification_(const ResidueModification &mod) | Residue | protected
setMonoWeight(double weight) | Residue |
setName(const String &name) | Residue |
setNTermLossFormulas(const std::vector< EmpiricalFormula > &) | Residue |
setNTermLossNames(const std::vector< String > &name) | Residue |
setOneLetterCode(const String &one_letter_code) | Residue |
setPka(double value) | Residue |
setPkb(double value) | Residue |
setPkc(double value) | Residue |
setResidueSets(const std::set< String > &residues_sets) | Residue |
setShortName(const String &short_name) | Residue |
setSideChainBasicity(double gb_sc) | Residue |
setSynonyms(const std::set< String > &synonyms) | Residue |
setThreeLetterCode(const String &three_letter_code) | Residue |
short_name_ | Residue | protected
SizeOfResidueType enum value | Residue |
synonyms_ | Residue | protected
three_letter_code_ | Residue | protected
Unannotated enum value | Residue |
XIon enum value | Residue |
YIon enum value | Residue |
YIonMinusH20 enum value | Residue |
YIonMinusNH3 enum value | Residue |
ZIon enum value | Residue |
~Residue() | Residue | virtual