| OpenMS 2.5.0

ConsensusMap Member List

This is the complete list of members for ConsensusMap, including all inherited members.

appendColumns(const ConsensusMap &rhs) | ConsensusMap |
appendRows(const ConsensusMap &rhs) | ConsensusMap |
applyFunctionOnPeptideHits(std::function< void(PeptideHit &)> &f, bool include_unassigned=true) | ConsensusMap |
applyFunctionOnPeptideHits(std::function< void(const PeptideHit &)> &, bool include_unassigned=true) const | ConsensusMap |
applyFunctionOnPeptideHits_(const std::vector< PeptideIdentification > &idvec, std::function< void(const PeptideHit &)> &f) const | ConsensusMap | private
applyFunctionOnPeptideHits_(std::vector< PeptideIdentification > &idvec, std::function< void(PeptideHit &)> &f) | ConsensusMap | private
applyFunctionOnPeptideIDs(std::function< void(PeptideIdentification &)> &f, bool include_unassigned=true) | ConsensusMap |
applyFunctionOnPeptideIDs(std::function< void(const PeptideIdentification &)> &f, bool include_unassigned=true) const | ConsensusMap |
applyFunctionOnPeptideIDs_(const std::vector< PeptideIdentification > &idvec, std::function< void(const PeptideIdentification &)> &f) const | ConsensusMap | private
applyFunctionOnPeptideIDs_(std::vector< PeptideIdentification > &idvec, std::function< void(PeptideIdentification &)> &f) | ConsensusMap | private
applyMemberFunction(Size(Type::*member_function)()) | ConsensusMap | inline
applyMemberFunction(Size(Type::*member_function)() const) const | ConsensusMap | inline
Base typedef | ConsensusMap |
clear(bool clear_meta_data=true) | ConsensusMap |
clearMetaInfo() | MetaInfoInterface |
clearRanges() | RangeManager< 2 > | inline
clearUniqueId() | UniqueIdInterface | inline
column_description_ | ConsensusMap | protected
ColumnHeaders typedef | ConsensusMap |
ConsensusMap() | ConsensusMap |
ConsensusMap(const ConsensusMap &source) | ConsensusMap |
ConsensusMap(Base::size_type n) | ConsensusMap | explicit
ConstIterator typedef | ConsensusMap |
ConstReverseIterator typedef | ConsensusMap |
createIfNotExists_() | MetaInfoInterface | inline protected
data_processing_ | ConsensusMap | protected
DIMENSION enum value | RangeManager< 2 > |
DocumentIdentifier() | DocumentIdentifier |
DocumentIdentifier(const DocumentIdentifier &)=default | DocumentIdentifier |
DocumentIdentifier(DocumentIdentifier &&)=default | DocumentIdentifier |
ensureUniqueId() | UniqueIdInterface | inline
experiment_type_ | ConsensusMap | protected
file_path_ | DocumentIdentifier | protected
file_type_ | DocumentIdentifier | protected
getBase_() const | UniqueIdIndexer< ConsensusMap > | inline protected
getBase_() | UniqueIdIndexer< ConsensusMap > | inline protected
getColumnHeaders() const | ConsensusMap |
getColumnHeaders() | ConsensusMap |
getDataProcessing() const | ConsensusMap |
getDataProcessing() | ConsensusMap |
getExperimentType() const | ConsensusMap |
getIdentifier() const | DocumentIdentifier |
getKeys(std::vector< String > &keys) const | MetaInfoInterface |
getKeys(std::vector< UInt > &keys) const | MetaInfoInterface |
getLoadedFilePath() const | DocumentIdentifier |
getLoadedFileType() const | DocumentIdentifier |
getMax() const | RangeManager< 2 > | inline
getMaxInt() const | RangeManager< 2 > | inline
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface |
getMin() const | RangeManager< 2 > | inline
getMinInt() const | RangeManager< 2 > | inline
getPrimaryMSRunPath(StringList &toFill) const | ConsensusMap |
getProteinIdentifications() const | ConsensusMap |
getProteinIdentifications() | ConsensusMap |
getUnassignedPeptideIdentifications() const | ConsensusMap |
getUnassignedPeptideIdentifications() | ConsensusMap |
getUniqueId() const | UniqueIdInterface | inline
hasInvalidUniqueId() const | UniqueIdInterface | inline
hasValidUniqueId() const | UniqueIdInterface | inline
id_ | DocumentIdentifier | protected
int_range_ | RangeManager< 2 > | protected
IntensityRangeType typedef | RangeManager< 2 > |
INVALID enum value | UniqueIdInterface |
isMapConsistent(Logger::LogStream *stream=nullptr) const | ConsensusMap |
isMetaEmpty() const | MetaInfoInterface |
isValid(UInt64 unique_id) | UniqueIdInterface | inline static
Iterator typedef | ConsensusMap |
meta_ | MetaInfoInterface | protected
MetaInfoInterface() | MetaInfoInterface |
MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface |
MetaInfoInterface(MetaInfoInterface &&) noexcept | MetaInfoInterface |
metaRegistry() | MetaInfoInterface | static
metaValueExists(const String &name) const | MetaInfoInterface |
metaValueExists(UInt index) const | MetaInfoInterface |
operator!=(const ConsensusMap &rhs) const | ConsensusMap |
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface |
RangeManager< 2 >::operator!=(const RangeManager &rhs) const | RangeManager< 2 > | inline
operator=(const ConsensusMap &source) | ConsensusMap |
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs) | MetaInfoInterface |
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept | MetaInfoInterface |
RangeManager< 2 >::operator=(const RangeManager &rhs) | RangeManager< 2 > | inline
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &)=default | DocumentIdentifier |
OpenMS::DocumentIdentifier::operator=(DocumentIdentifier &&) &=default | DocumentIdentifier |
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface const &rhs)=default | UniqueIdInterface |
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface &&) &=default | UniqueIdInterface |
operator==(const ConsensusMap &rhs) const | ConsensusMap |
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface |
RangeManager< 2 >::operator==(const RangeManager &rhs) const | RangeManager< 2 > | inline
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) const | DocumentIdentifier |
OpenMS::UniqueIdInterface::operator==(UniqueIdInterface const &rhs) const | UniqueIdInterface | inline
pos_range_ | RangeManager< 2 > | protected
PositionRangeType typedef | RangeManager< 2 > |
PositionType typedef | RangeManager< 2 > |
privvec typedef | ConsensusMap |
protein_identifications_ | ConsensusMap | protected
RangeManager() | RangeManager< 2 > | inline
RangeManager(const RangeManager &rhs) | RangeManager< 2 > | inline
RangeManager(RangeManager &&) noexcept=default | RangeManager< 2 > |
RangeManagerType typedef | ConsensusMap |
removeMetaValue(const String &name) | MetaInfoInterface |
removeMetaValue(UInt index) | MetaInfoInterface |
resolveUniqueIdConflicts() | UniqueIdIndexer< ConsensusMap > | inline
ReverseIterator typedef | ConsensusMap |
setColumnHeaders(const ColumnHeaders &column_description) | ConsensusMap |
setDataProcessing(const std::vector< DataProcessing > &processing_method) | ConsensusMap |
setExperimentType(const String &experiment_type) | ConsensusMap |
setIdentifier(const String &id) | DocumentIdentifier |
setLoadedFilePath(const String &file_name) | DocumentIdentifier |
setLoadedFileType(const String &file_name) | DocumentIdentifier |
setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface |
setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface |
setPrimaryMSRunPath(const StringList &s) | ConsensusMap |
setPrimaryMSRunPath(const StringList &s, MSExperiment &e) | ConsensusMap |
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications) | ConsensusMap |
setProteinIdentifications(std::vector< ProteinIdentification > &&protein_identifications) | ConsensusMap |
setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications) | ConsensusMap |
setUniqueId() | UniqueIdInterface | inline
setUniqueId(UInt64 rhs) | UniqueIdInterface | inline
setUniqueId(const String &rhs) | UniqueIdInterface |
sortByIntensity(bool reverse=false) | ConsensusMap |
sortByMaps() | ConsensusMap |
sortByMZ() | ConsensusMap |
sortByPosition() | ConsensusMap |
sortByQuality(bool reverse=false) | ConsensusMap |
sortByRT() | ConsensusMap |
sortBySize() | ConsensusMap |
sortPeptideIdentificationsByMapIndex() | ConsensusMap |
swap(ConsensusMap &from) | ConsensusMap |
OpenMS::DocumentIdentifier::swap(DocumentIdentifier &from) | DocumentIdentifier |
OpenMS::UniqueIdInterface::swap(UniqueIdInterface &from) | UniqueIdInterface | inline
UniqueIdIndexer< ConsensusMap >::swap(UniqueIdIndexer &rhs) | UniqueIdIndexer< ConsensusMap > | inline
unassigned_peptide_identifications_ | ConsensusMap | protected
unique_id_ | UniqueIdInterface | protected
uniqueid_to_index_ | UniqueIdIndexer< ConsensusMap > | mutable protected
UniqueIdInterface() | UniqueIdInterface | inline
UniqueIdInterface(const UniqueIdInterface &rhs)=default | UniqueIdInterface |
UniqueIdInterface(UniqueIdInterface &&rhs)=default | UniqueIdInterface |
UniqueIdMap typedef | UniqueIdIndexer< ConsensusMap > |
uniqueIdToIndex(UInt64 unique_id) const | UniqueIdIndexer< ConsensusMap > | inline
updateRanges() override | ConsensusMap | virtual
updateRanges_(const PeakIteratorType &begin, const PeakIteratorType &end) | RangeManager< 2 > | inline protected
updateUniqueIdToIndex() const | UniqueIdIndexer< ConsensusMap > | inline
~ConsensusMap() override | ConsensusMap |
~DocumentIdentifier() | DocumentIdentifier | virtual
~MetaInfoInterface() | MetaInfoInterface |
~RangeManager() | RangeManager< 2 > | inline virtual
~UniqueIdInterface()=default | UniqueIdInterface | virtual