| OpenMS 2.5.0

PeptideIdentificationVisualizer.h
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1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 // OpenMS_GUI config
38 #include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
39
40 //OpenMS
41 #include <OpenMS/METADATA/PeptideIdentification.h>
42 #include <OpenMS/VISUAL/VISUALIZER/BaseVisualizer.h>
43 #include <OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h>
44
45 namespace OpenMS
46 {
47 class MetaDataBrowser;
48
54 class OPENMS_GUI_DLLAPI PeptideIdentificationVisualizer :
55 public BaseVisualizerGUI,
56 public BaseVisualizer<PeptideIdentification>
57 {
58 Q_OBJECT
59
60 public:
62 PeptideIdentificationVisualizer(bool editable = false, QWidget * parent = nullptr, MetaDataBrowser * caller = nullptr);
63
65 void load(PeptideIdentification & s, int tree_item_id);
66
67 public slots:
68
69 //Docu in base class
70 void store() override;
71
72 protected slots:
73
75 void undo_();
76
84 void updateTree_();
85
86 protected:
88 MetaDataBrowser * pidv_caller_;
90 int tree_id_;
91
93
94 QLineEdit * identifier_;
95 QLineEdit * score_type_;
96 QComboBox * higher_better_;
97 QLineEdit * identification_threshold_;
99
101 QLineEdit * filter_threshold_;
102 };
103 }
QLineEdit
QWidget
OpenMS::PeptideIdentificationVisualizer::identifier_
QLineEdit * identifier_
Definition: PeptideIdentificationVisualizer.h:94
OpenMS::PeptideIdentificationVisualizer::score_type_
QLineEdit * score_type_
Definition: PeptideIdentificationVisualizer.h:95
OpenMS::BaseVisualizerGUI
A base class for all visualizer classes.
Definition: BaseVisualizerGUI.h:64
OpenMS::PeptideIdentificationVisualizer::pidv_caller_
MetaDataBrowser * pidv_caller_
Pointer to MetaDataBrowser.
Definition: PeptideIdentificationVisualizer.h:88
BaseVisualizer.h
OpenMS::BaseVisualizer
A base class for all visualizer classes.
Definition: BaseVisualizer.h:53
OpenMS::PeptideIdentificationVisualizer::higher_better_
QComboBox * higher_better_
Definition: PeptideIdentificationVisualizer.h:96
BaseVisualizerGUI.h
OpenMS::MetaDataBrowser
A meta data visualization widget.
Definition: MetaDataBrowser.h:104
OpenMS::PeptideIdentificationVisualizer::tree_id_
int tree_id_
The id of the item in the tree.
Definition: PeptideIdentificationVisualizer.h:90
PeptideIdentification.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::PeptideIdentificationVisualizer::identification_threshold_
QLineEdit * identification_threshold_
Definition: PeptideIdentificationVisualizer.h:97
OpenMS::PeptideIdentificationVisualizer
Class that displays all meta information for PeptideIdentification objects.
Definition: PeptideIdentificationVisualizer.h:54
OpenMS::PeptideIdentificationVisualizer::filter_threshold_
QLineEdit * filter_threshold_
Threshold for filtering by score.
Definition: PeptideIdentificationVisualizer.h:101
OpenMS::PeptideIdentification
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:62