| OpenMS 2.5.0

TwoDOptimization Member List

This is the complete list of members for TwoDOptimization, including all inherited members.

check_defaults_ | DefaultParamHandler | protected
curr_region_ | TwoDOptimization | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
error_name_ | DefaultParamHandler | protected
findMatchingPeaks_(std::multimap< double, IsotopeCluster >::iterator &it, PeakMap &ms_exp) | TwoDOptimization | protected
getDefaults() const | DefaultParamHandler |
getMaxIterations() const | TwoDOptimization | inline
getMaxPeakDistance() const | TwoDOptimization | inline
getMZTolerance() const | TwoDOptimization | inline
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getPenalties() const | TwoDOptimization | inline
getRegionEndpoints_(PeakMap &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, double noise_level, TwoDOptimization::Data &d) | TwoDOptimization | protected
getSubsections() const | DefaultParamHandler |
iso_map_ | TwoDOptimization | protected
matching_peaks_ | TwoDOptimization | protected
max_iteration_ | TwoDOptimization | protected
max_peak_distance_ | TwoDOptimization | protected
operator=(const TwoDOptimization &opt) | TwoDOptimization |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
optimize(InputSpectrumIterator first, InputSpectrumIterator last, PeakMap &ms_exp, bool real2D=true) | TwoDOptimization |
optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp) | TwoDOptimization | protected
optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp) | TwoDOptimization | protected
param_ | DefaultParamHandler | protected
penalties_ | TwoDOptimization | protected
real_2D_ | TwoDOptimization | protected
searchInScan_(std::vector< double >::iterator scan_begin, std::vector< double >::iterator scan_end, double current_mz) | TwoDOptimization | protected
setMaxIterations(UInt max_iteration) | TwoDOptimization | inline
setMaxPeakDistance(double max_peak_distance) | TwoDOptimization | inline
setMZTolerance(double tolerance_mz) | TwoDOptimization | inline
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties) | TwoDOptimization | inline
subsections_ | DefaultParamHandler | protected
tolerance_mz_ | TwoDOptimization | protected
TwoDOptimization() | TwoDOptimization |
TwoDOptimization(const TwoDOptimization &opt) | TwoDOptimization |
updateMembers_() override | TwoDOptimization | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~TwoDOptimization() override | TwoDOptimization | inline