| OpenMS 2.5.0

MapAlignmentAlgorithmTreeGuided Member List

This is the complete list of members for MapAlignmentAlgorithmTreeGuided, including all inherited members.

addPeptideSequences_(const std::vector< PeptideIdentification > &peptides, SeqAndRTList &peptide_rts, std::vector< double > &map_range, double feature_rt) | MapAlignmentAlgorithmTreeGuided | protected static
align_algorithm_ | MapAlignmentAlgorithmTreeGuided | protected
buildTree(std::vector< FeatureMap > &feature_maps, std::vector< BinaryTreeNode > &tree, std::vector< std::vector< double >> &maps_ranges) | MapAlignmentAlgorithmTreeGuided | static
check_defaults_ | DefaultParamHandler | protected
CMD enum value | ProgressLogger |
computeTrafosByOriginalRT(std::vector< FeatureMap > &feature_maps, FeatureMap &map_transformed, std::vector< TransformationDescription > &transformations, const std::vector< Size > &trafo_order) | MapAlignmentAlgorithmTreeGuided |
computeTransformedFeatureMaps(std::vector< FeatureMap > &feature_maps, const std::vector< TransformationDescription > &transformations) | MapAlignmentAlgorithmTreeGuided | static
current_logger_ | ProgressLogger | mutable protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
endProgress() const | ProgressLogger |
error_name_ | DefaultParamHandler | protected
extractSeqAndRt_(const std::vector< FeatureMap > &feature_maps, std::vector< SeqAndRTList > &maps_seq_and_rt, std::vector< std::vector< double >> &maps_ranges) | MapAlignmentAlgorithmTreeGuided | protected static
getDefaults() const | DefaultParamHandler |
getLogType() const | ProgressLogger |
getName() const | DefaultParamHandler |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
GUI enum value | ProgressLogger |
last_invoke_ | ProgressLogger | mutable protected
LogType enum name | ProgressLogger |
logTypeToFactoryName_(LogType type) | ProgressLogger | protected static
MapAlignmentAlgorithmTreeGuided() | MapAlignmentAlgorithmTreeGuided |
MapAlignmentAlgorithmTreeGuided(const MapAlignmentAlgorithmTreeGuided &) | MapAlignmentAlgorithmTreeGuided | private
model_param_ | MapAlignmentAlgorithmTreeGuided | protected
model_type_ | MapAlignmentAlgorithmTreeGuided | protected
nextProgress() const | ProgressLogger |
NONE enum value | ProgressLogger |
operator=(const MapAlignmentAlgorithmTreeGuided &) | MapAlignmentAlgorithmTreeGuided | private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
ProgressLogger() | ProgressLogger |
ProgressLogger(const ProgressLogger &other) | ProgressLogger |
recursion_depth_ | ProgressLogger | protected static
SeqAndRTList typedef | MapAlignmentAlgorithmTreeGuided | protected
setLogType(LogType type) const | ProgressLogger |
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
setProgress(SignedSize value) const | ProgressLogger |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |
subsections_ | DefaultParamHandler | protected
treeGuidedAlignment(const std::vector< BinaryTreeNode > &tree, std::vector< FeatureMap > feature_maps_transformed, std::vector< std::vector< double >> &maps_ranges, FeatureMap &map_transformed, std::vector< Size > &trafo_order) | MapAlignmentAlgorithmTreeGuided |
type_ | ProgressLogger | mutable protected
updateMembers_() override | MapAlignmentAlgorithmTreeGuided | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual
~MapAlignmentAlgorithmTreeGuided() override | MapAlignmentAlgorithmTreeGuided |
~ProgressLogger() | ProgressLogger |