| OpenMS 2.5.0

LabeledEval

Evaluation tool for isotope-labeled quantitation experiments.

The command line parameters of this tool are:

    LabeledEval --  Evaluation tool for isotope-labeled quantitation experiments.

    Full documentation: http://www.openms.de/documentation/UTILS_LabeledEval.html

    Version: 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Sep 10 2020, 12:20:39, Revision: GIT-NOTFOUND

    To cite OpenMS:

      Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

    Usage:

      LabeledEval <options>

    Options (mandatory options marked with '*'):

      -in <file>*        Feature result file (valid formats: 'featureXML')

      -truth <file>*     Expected result file. (valid formats: 'consensusXML')

      -rt_tol <tol>      Maximum allowed retention time deviation (default: '20.0')

      -mz_tol <tol>      Maximum allowed m/z deviation (divided by charge) (default: '0.25')

    Common UTIL options:

      -ini <file>        Use the given TOPP INI file

      -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')

      -write_ini <file>  Writes the default configuration file

      --help             Shows options

      --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+LabeledEval Evaluation tool for isotope-labeled quantitation experiments.
version 2.5.0-GIT-NOTFOUND-GIT-NOTFOUND Version of the tool that generated this parameters file.
++1 Instance '1' section for 'LabeledEval'
in Feature result file input file*.featureXML
truth Expected result file.input file*.consensusXML
rt_tol 20.0 Maximum allowed retention time deviation
mz_tol 0.25 Maximum allowed m/z deviation (divided by charge)
log Name of log file (created only when specified)
debug 0 Sets the debug level
threads 1 Sets the number of threads allowed to be used by the TOPP tool
no_progress false Disables progress logging to command line true,false
force false Overwrite tool specific checks.true,false
test false Enables the test mode (needed for internal use only)true,false