| OpenMS 2.5.0

MzIdentMLDOMHandler Member List

This is the complete list of members for MzIdentMLDOMHandler, including all inherited members.

as_map_ | MzIdentMLDOMHandler | private
buildAnalysisCollection_(xercesc::DOMElement *analysisCollectionElements) | MzIdentMLDOMHandler | protected
buildAnalysisDataCollection_(xercesc::DOMElement *analysisElements) | MzIdentMLDOMHandler | protected
buildAnalysisProtocolCollection_(xercesc::DOMElement *protocolElements) | MzIdentMLDOMHandler | protected
buildAnalysisSoftwareList_(xercesc::DOMElement *analysisSoftwareElements) | MzIdentMLDOMHandler | protected
buildCvList_(xercesc::DOMElement *cvElements) | MzIdentMLDOMHandler | protected
buildEnclosedCV_(xercesc::DOMElement *parentElement, String encel, String acc, String name, String cvref) | MzIdentMLDOMHandler | protected
buildInputDataCollection_(xercesc::DOMElement *inputElements) | MzIdentMLDOMHandler | protected
buildSequenceCollection_(xercesc::DOMElement *sequenceCollectionElements) | MzIdentMLDOMHandler | protected
cpep_id_ | MzIdentMLDOMHandler | protected
cpro_id_ | MzIdentMLDOMHandler | protected
cv_ | MzIdentMLDOMHandler | protected
db_map_ | MzIdentMLDOMHandler | private
db_sq_map_ | MzIdentMLDOMHandler | private
findSearchParameters_(std::pair< CVTermList, std::map< String, DataValue > > as_params) | MzIdentMLDOMHandler | protected static
getChildWithName_(const String &parent_accession, const String &name) const | MzIdentMLDOMHandler | protected
hit_pev_ | MzIdentMLDOMHandler | private
logger_ | MzIdentMLDOMHandler | protected
mzid_parser_ | MzIdentMLDOMHandler | private
MzIdentMLDOMHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &version, const ProgressLogger &logger) | MzIdentMLDOMHandler |
MzIdentMLDOMHandler(std::vector< ProteinIdentification > &pro_id, std::vector< PeptideIdentification > &pep_id, const String &version, const ProgressLogger &logger) | MzIdentMLDOMHandler |
MzIdentMLDOMHandler() | MzIdentMLDOMHandler | private
MzIdentMLDOMHandler(const MzIdentMLDOMHandler &rhs) | MzIdentMLDOMHandler | private
operator=(const MzIdentMLDOMHandler &rhs) | MzIdentMLDOMHandler | private
p_pv_map_ | MzIdentMLDOMHandler | private
parseAnalysisSoftwareList_(xercesc::DOMNodeList *analysisSoftwareElements) | MzIdentMLDOMHandler | protected
parseCvParam_(xercesc::DOMElement *param) | MzIdentMLDOMHandler | protected
parseDBSequenceElements_(xercesc::DOMNodeList *dbSequenceElements) | MzIdentMLDOMHandler | protected
parseInputElements_(xercesc::DOMNodeList *inputElements) | MzIdentMLDOMHandler | protected
parseParamGroup_(xercesc::DOMNodeList *paramGroup) | MzIdentMLDOMHandler | protected
parsePeptideElements_(xercesc::DOMNodeList *peptideElements) | MzIdentMLDOMHandler | protected
parsePeptideEvidenceElements_(xercesc::DOMNodeList *peptideEvidenceElements) | MzIdentMLDOMHandler | protected
parsePeptideSiblings_(xercesc::DOMElement *peptide) | MzIdentMLDOMHandler | protected
parseProteinAmbiguityGroupElement_(xercesc::DOMElement *proteinAmbiguityGroupElement, ProteinIdentification &protein_identification) | MzIdentMLDOMHandler | protected
parseProteinDetectionHypothesisElement_(xercesc::DOMElement *proteinDetectionHypothesisElement, ProteinIdentification &protein_identification) | MzIdentMLDOMHandler | protected
parseProteinDetectionListElements_(xercesc::DOMNodeList *proteinDetectionListElements) | MzIdentMLDOMHandler | protected
parseSpectrumIdentificationElements_(xercesc::DOMNodeList *spectrumIdentificationElements) | MzIdentMLDOMHandler | protected
parseSpectrumIdentificationItemElement_(xercesc::DOMElement *spectrumIdentificationItemElement, PeptideIdentification &spectrum_identification, String &spectrumIdentificationList_ref) | MzIdentMLDOMHandler | protected
parseSpectrumIdentificationItemSetXLMS(std::set< String >::const_iterator set_it, std::multimap< String, int > xl_val_map, xercesc::DOMElement *element_res, String spectrumID) | MzIdentMLDOMHandler | protected
parseSpectrumIdentificationListElements_(xercesc::DOMNodeList *spectrumIdentificationListElements) | MzIdentMLDOMHandler | protected
parseSpectrumIdentificationProtocolElements_(xercesc::DOMNodeList *spectrumIdentificationProtocolElements) | MzIdentMLDOMHandler | protected
parseUserParam_(xercesc::DOMElement *param) | MzIdentMLDOMHandler | protected
pe_ev_map_ | MzIdentMLDOMHandler | private
pep_id_ | MzIdentMLDOMHandler | protected
pep_map_ | MzIdentMLDOMHandler | private
pro_id_ | MzIdentMLDOMHandler | protected
pv_db_map_ | MzIdentMLDOMHandler | private
readMzIdentMLFile(const std::string &mzid_file) | MzIdentMLDOMHandler |
schema_version_ | MzIdentMLDOMHandler | protected
sd_map_ | MzIdentMLDOMHandler | private
search_engine_ | MzIdentMLDOMHandler | private
search_engine_version_ | MzIdentMLDOMHandler | private
si_map_ | MzIdentMLDOMHandler | private
si_pro_map_ | MzIdentMLDOMHandler | private
sp_map_ | MzIdentMLDOMHandler | private
sr_map_ | MzIdentMLDOMHandler | private
unimod_ | MzIdentMLDOMHandler | protected
writeMzIdentMLFile(const std::string &mzid_file) | MzIdentMLDOMHandler |
xl_acceptor_pos_map_ | MzIdentMLDOMHandler | private
xl_donor_pos_map_ | MzIdentMLDOMHandler | private
xl_id_acceptor_map_ | MzIdentMLDOMHandler | private
xl_id_donor_map_ | MzIdentMLDOMHandler | private
xl_mass_map_ | MzIdentMLDOMHandler | private
xl_mod_map_ | MzIdentMLDOMHandler | private
xl_ms_search_ | MzIdentMLDOMHandler | private
xml_cvparam_tag_ptr_ | MzIdentMLDOMHandler | private
xml_name_attr_ptr_ | MzIdentMLDOMHandler | private
xml_root_tag_ptr_ | MzIdentMLDOMHandler | private
~MzIdentMLDOMHandler() | MzIdentMLDOMHandler | virtual