| OpenMS 2.5.0

Classes | Namespaces | Functions
TargetedExperimentHelper.h File Reference
`#include <OpenMS/KERNEL/StandardTypes.h>`
`#include <OpenMS/KERNEL/StandardDeclarations.h>`
`#include <OpenMS/CONCEPT/Types.h>`
`#include <OpenMS/CONCEPT/Exception.h>`
`#include <OpenMS/CONCEPT/Macros.h>`
`#include <OpenMS/CHEMISTRY/AASequence.h>`
`#include <OpenMS/METADATA/CVTerm.h>`
`#include <OpenMS/METADATA/CVTermList.h>`
`#include <OpenMS/METADATA/CVTermListInterface.h>`
`#include <OpenMS/CHEMISTRY/Residue.h>`
`#include <boost/numeric/conversion/cast.hpp>`

Go to the source code of this file.

## Classes

struct | Configuration
struct | CV
struct | Protein
class | RetentionTime
| This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More...
class | PeptideCompound
| Base class to represent either a peptide or a compound. More...
class | Compound
| Represents a compound (small molecule) More...
class | Peptide
| Represents a peptide (amino acid sequence) More...
struct | Peptide::Modification
struct | Contact
struct | Publication
struct | Instrument
struct | Prediction
struct | Interpretation
| Product ion interpretation. More...
struct | TraMLProduct
| Represents a product ion. More...

## Namespaces

| OpenMS
| Main OpenMS namespace.
| OpenMS::TargetedExperimentHelper
| This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget).

## Functions

OpenMS::AASequence | getAASequence (const Peptide &peptide)
| helper function that converts a Peptide object to a AASequence object More...
void | setModification (int location, int max_size, String modification, OpenMS::AASequence &aas)
| helper function that sets a modification on a AASequence object More...