| OpenMS 2.5.0

Here is a list of all class members with links to the classes they belong to:

### - e -

- e_ : MapAlignmentAlgorithmSpectrumAlignment
- E_ : ProtonDistributionModel
- E_c_term_ : ProtonDistributionModel
- E_n_term_ : ProtonDistributionModel
- E_wrt_h() : EmgGradientDescent
- E_wrt_mu() : EmgGradientDescent
- E_wrt_sigma() : EmgGradientDescent
- E_wrt_tau() : EmgGradientDescent
- ECD : Precursor
- edge : TOPPASVertex::VertexRoundPackage
- edge_ : TOPPASIOMappingDialog
- edge_being_created_ : TOPPASVertex
- edge_t : IDBoostGraph
- EdgeContainer : TOPPASScene , TOPPASVertex
- EdgeIterator : TOPPASScene , TOPPASVertex
- edges_ : TOPPASScene
- edgesBegin() : TOPPASScene
- edgesEnd() : TOPPASScene
- EdgeStatus : TOPPASEdge
- edit() : ParamTree
- editable_ : BaseVisualizerGUI , MetaDataBrowser
- editCurrentItem() : TOPPASInputFilesDialog
- editMetadata() : TOPPViewBase
- editor_ : INIFileEditorWindow , ToolsDialog , TOPPASToolConfigDialog
- editParam() : TOPPASToolVertex
- editText() : Annotation1DItem
- EDTA : FileTypes
- EDTAFile() : EDTAFile
- ef_ : AdductInfo
- efficient_replace_and_optimise() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- egh_tau_location_ : RTSimulation
- egh_tau_scale_ : RTSimulation
- egh_variance_location_ : RTSimulation
- egh_variance_scale_ : RTSimulation
- EGHFitter1D() : EGHFitter1D
- EGHFitterFunctor() : EGHFitter1D::EGHFitterFunctor
- EGHModel() : EGHModel
- EGHTraceFitter() : EGHTraceFitter
- EGHTraceFunctor() : EGHTraceFitter::EGHTraceFunctor
- EgmFitterFunctor() : EmgFitter1D::EgmFitterFunctor
- EI : IonSource
- EIGHTPLEX : ItraqConstants
- EINZEL_LENS : Instrument
- ELECTROMAGNETIC_RADIATION_CHROMATOGRAM : ChromatogramSettings
- ELECTRON_MASS_IN_U : IMSElement
- ELECTRONMULTIPLIER : IonDetector
- ELECTRONMULTIPLIERTUBE : IonDetector
- ELECTROSPRAYINLET : IonSource
- Element() : Element
- element_1_ : FuzzyStringComparator
- element_2_ : FuzzyStringComparator
- element_path_ : CVMappingRule
- element_type : IMSAlphabet
- ElementDB() : ElementDB
- ElementMapping : QTClusterFinder
- ElementNotFound() : ElementNotFound
- elements_ : FeatureFindingMetabo , IMSAlphabet , IMSAlphabetTextParser , SiriusAdapterAlgorithm
- elementsFromString_() : FeatureFindingMetabo
- eluents_ : Gradient , GradientVisualizer
- elution_model_ : FeatureFinderIdentificationAlgorithm
- elution_model_fit_score : OpenSwath_Scores
- elution_peak : ProcessData
- elution_peak_list : LCMSCData
- elution_peak_list_ITERATOR : LCMSCData
- elutionModelFit() : EmgScoring
- ElutionModelFitter() : ElutionModelFitter
- ElutionPeakDetection() : ElutionPeakDetection
- elutionPeakExtraInfo : LCElutionPeak
- email : MzTabContactMetaData
- email_ : ContactPerson , ContactPersonVisualizer
- EMC : InstrumentSettings
- emg_ : PeakIntegrator
- emg_gd_ : EmgGradientDescent_friend
- emg_point() : EmgGradientDescent , EmgGradientDescent_friend
- EmgFitter1D() : EmgFitter1D
- EmgGradientDescent() : EmgGradientDescent
- EmgGradientDescent_friend : EmgGradientDescent , EmgGradientDescent_friend
- EmgModel() : EmgModel
- EMGPreProcess_() : PeakIntegrator
- EmgScoring() : EmgScoring
- emgscoring_ : MRMFeatureFinderScoring
- EMISSION : InstrumentSettings
- EMISSION_CHROMATOGRAM : ChromatogramSettings
- emitChanged() : TOPPASEdge
- emitToolStarted() : TOPPASToolVertex
- empirical_formula_ : AccurateMassSearchResult
- EmpiricalFormula() : EmpiricalFormula
- empty() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , CVTermList , CVTermListInterface
- EMPTY : DataValue
- empty() : FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector > , File , HashGrid< Cluster > , IMSIsotopeDistribution , DIntervalBase< D > , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , MetaInfo , MSExperiment , NASequence , OnDiscMSExperiment , Param , PeptideIdentification , QCBase::SpectraMap , SpectrumLookup
- EMPTY : String , VersionInfo::VersionDetails
- empty_channels : IsobaricQuantifierStatistics
- empty_features : Contaminants::ContaminantsSummary
- empty_list_ : TOPPASResources
- empty_rows_ : MzTab
- EMPTY_VALUE : DataValue
- EmptySparseVector : BinnedSpectrum
- EMR : InstrumentSettings
- EMULSION : Sample
- enable_() : ToolsDialog
- enable_binarization : LPWrapper::SolverParam
- enable_clq_cuts : LPWrapper::SolverParam
- enable_cov_cuts : LPWrapper::SolverParam
- enable_feas_pump_heuristic : LPWrapper::SolverParam
- enable_gmi_cuts : LPWrapper::SolverParam
- enable_intensity_filter_ : FeatureDeconvolution , MetaboliteFeatureDeconvolution
- enable_mir_cuts : LPWrapper::SolverParam
- enable_presolve : LPWrapper::SolverParam
- enable_RT_filtering_ : FeatureFindingMetabo
- enable_uis_scoring_ : OpenSwathOSWWriter
- enabled_trans_ : HiddenMarkovModel
- enableFeatureNumber() : Spectrum2DGoToDialog
- enableLogging_() : TOPPBase
- enableTransition() : HiddenMarkovModel
- enableTransition_() : HiddenMarkovModel
- encloses() : _Region< __K, _Val, _SubVal, _Acc, _Cmp > , ConvexHull2D , DBoundingBox< D > , DRange< D > , Feature
- encode() : Base64
- encodeCompositionVector() : LibSVMEncoder
- encodeCompositionVectors() : LibSVMEncoder
- encodeIntegers() : Base64
- encodeLibSVMProblem() : LibSVMEncoder
- encodeLibSVMProblemWithCompositionAndLengthVectors() : LibSVMEncoder
- encodeLibSVMProblemWithCompositionLengthAndWeightVectors() : LibSVMEncoder
- encodeLibSVMProblemWithCompositionVectors() : LibSVMEncoder
- encodeLibSVMProblemWithOligoBorderVectors() : LibSVMEncoder
- encodeLibSVMVector() : LibSVMEncoder
- encodeLibSVMVectors() : LibSVMEncoder
- encodeNP() : MSNumpressCoder
- encodeNPRaw() : MSNumpressCoder
- encodeOligo() : LibSVMEncoder
- encodeOligoBorders() : LibSVMEncoder
- encodeProblemWithOligoBorderVectors() : LibSVMEncoder
- encoder_ : Base64
- encodeStrings() : Base64
- end() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , EmpiricalFormula , FeatureFinderIdentificationAlgorithm::RTRegion , HashGrid< Cluster > , IsotopeDistribution , IsotopeWaveletTransform< PeakType >::TransSpectrum , MassTrace , MatchedIterator< CONT_T, TRAIT, CONST_T > , Histogram< ValueType, BinSizeType > , MSExperiment , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow , NASequence , Param , RibonucleotideDB , ScanWindow , TextFile , XCorrArrayType
- end_ : GUIProgressLoggerImpl , PeptideEvidence , ScanWindowVisualizer
- end_boxes_ : IsotopeWaveletTransform< PeakType >
- end_left_padding_ : ContinuousWaveletTransform
- end_peak_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
- end_point_ : Annotation1DDistanceItem
- end_pos : MoleculeParentMatch
- end_position_at_10 : PeakIntegrator::PeakShapeMetrics
- end_position_at_5 : PeakIntegrator::PeakShapeMetrics
- end_position_at_50 : PeakIntegrator::PeakShapeMetrics
- end_scan_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
- endElement() : ConsensusXMLFile , CVMappingFile , FeatureXMLFile , IdXMLFile , MascotXMLHandler , MzDataHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , ParamXMLHandler , PTMXMLHandler , SemanticValidator , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , XMLHandler , XQuestResultXMLHandler , OMSSAXMLFile , PepXMLFile , PepXMLFileMascot , ProtXMLFile , QcMLFile , XTandemXMLFile
- endEnzyme() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- endians_ : MzDataHandler
- EndParsingSoftly() : XMLHandler::EndParsingSoftly
- endPos() : TOPPASEdge
- endProgress() : GUIProgressLoggerImpl , ProgressLogger , ProgressLogger::ProgressLoggerImpl
- endResidue() : ResidueDB
- endRun_() : MascotRemoteQuery
- endScan : MS2ConsensusSpectrum
- endTR : MS2ConsensusSpectrum
- enforced_encoding_ : XMLFile
- enforceEncoding_() : XMLFile
- engine_ : ProteinIdentificationVisualizer
- engine_version_ : ProteinIdentificationVisualizer
- EnhancedTabBar() : EnhancedTabBar
- EnhancedWorkspace() : EnhancedWorkspace
- enhancedWorkspaceWindowChanged() : TOPPViewBase
- enlarge() : DBoundingBox< D >
- enqueueProcess() : TOPPASScene
- ensureAnnotationsWithinDataRange_() : Spectrum1DCanvas
- ensureConvexHulls_() : FeatureFinderIdentificationAlgorithm
- ensureLastChar() : String , StringUtils
- ensureMapsAreFilled_() : CachedSwathFileConsumer , FullSwathFileConsumer , MzMLSwathFileConsumer , RegularSwathFileConsumer
- ensureUniqueId() : UniqueIdInterface
- ensureWithinDataRange() : Annotation1DCaret , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem , Annotation1DTextItem
- enterEvent() : SpectrumCanvas , TOPPASTreeView , TOPPASWidget
- entirePipelineFinished() : TOPPASScene
- entries : Param::ParamNode
- entries_ : MzTabDoubleList , MzTabIntegerList , MzTabModificationList , MzTabStringList
- entries_read_ : FASTAFile
- entry : SimProtein
- EntryIterator : Param::ParamNode
- enumerateCrossLinksAndMasses() : OPXLHelper
- enumToName() : MZTrafoModel
- EnzymaticDigestion() : EnzymaticDigestion
- EnzymaticDigestionLogModel() : EnzymaticDigestionLogModel
- enzyme : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- enzyme_ : Digestion , EnzymaticDigestion , EnzymaticDigestionLogModel , InspectInfile , PeptideIndexing::FoundProteinFunctor , PepXMLFile , ProteinIdentificationVisualizer , SimpleSearchEngineAlgorithm
- enzyme_info_ : SequestInfile
- enzyme_name_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , PeptideIndexing
- enzyme_names_ : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- enzyme_number_ : SequestInfile
- enzyme_regex_ : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- enzyme_specificity_ : PeptideIndexing
- EnzymeIterator : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
- enzymes : XQuestResultXMLHandler
- enzymes_db_ : XQuestResultXMLHandler
- eol_ : CSVWriter
- Epifany() : Epifany
- EPSILON_COEFS_ : EGHTraceFitter
- EQUAL : DataFilters
- equal_() : XMLHandler
- equal_type : ConsensusMapMergerAlgorithm , IDMergerAlgorithm
- EqualInTolerance() : EqualInTolerance< CompareType >
- equals() : Map< Key, T >
- erase() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT > , HashGrid< Cluster > , IMSAlphabet
- erase_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
- erase_match_list() : SHFeature
- erase_MZ_cluster_element() : ProcessData
- erase_MZ_LIST_element() : ProcessData
- eraseMinDistance_() : GridBasedClustering< Metric >
- err : MorpheusScore::Result
- error() : XMLHandler , XMLValidator
- error_ : NetworkGetRequest
- error_medians_ : TOFCalibration
- error_message_ : XMLHandler , MascotRemoteQuery
- error_name_ : DefaultParamHandler
- error_occured_ : TOPPASScene
- error_on_unmapped_ : MRMMapping
- error_streams_ : LogConfigHandler
- error_string_ : NetworkGetRequest
- errorIfAlreadyExists() : ExperimentalDesign
- errors_ : SemanticValidator , TOFCalibration
- errorString() : XMLHandler
- ErrorUnit : XTandemInfile
- ertable_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
- ES_FILE_EXT_MISMATCH : TOPPASEdge
- ES_MERGER_EXT_MISMATCH : TOPPASEdge
- ES_MERGER_WITHOUT_TOOL : TOPPASEdge
- ES_NO_SOURCE_PARAM : TOPPASEdge
- ES_NO_TARGET_PARAM : TOPPASEdge
- ES_NOT_READY_YET : TOPPASEdge
- ES_TOOL_API_CHANGED : TOPPASEdge
- ES_UNKNOWN : TOPPASEdge
- ES_VALID : TOPPASEdge
- ESA : MassAnalyzer
- ESCAPE : String
- ESI : IonizationSimulation , IonSource
- esi_adducts_ : IonizationSimulation
- esi_impurity_probabilities_ : IonizationSimulation
- esi_probability_ : IonizationSimulation
- estimate_() : SignalToNoiseEstimator< Container >
- estimate_fixed_point : MSNumpressCoder::NumpressConfig
- estimateBackground() : PeakIntegrator
- estimateBackground_() : PeakIntegrator
- estimateEmgParameters() : EmgGradientDescent
- estimateForFragmentFromDNAWeight() : CoarseIsotopePatternGenerator
- estimateForFragmentFromPeptideWeight() : CoarseIsotopePatternGenerator
- estimateForFragmentFromPeptideWeightAndS() : CoarseIsotopePatternGenerator
- estimateForFragmentFromRNAWeight() : CoarseIsotopePatternGenerator
- estimateForFragmentFromWeightAndComp() : CoarseIsotopePatternGenerator
- estimateFromDNAWeight() : CoarseIsotopePatternGenerator
- estimateFromPeptideWeight() : CoarseIsotopePatternGenerator
- estimateFromPeptideWeightAndS() : CoarseIsotopePatternGenerator
- estimateFromRNAWeight() : CoarseIsotopePatternGenerator
- estimateFromWeightAndComp() : CoarseIsotopePatternGenerator , EmpiricalFormula
- estimateFromWeightAndCompAndS() : CoarseIsotopePatternGenerator , EmpiricalFormula
- estimateFWHM() : MassTrace
- estimateMedianChromatographicFWHM_() : UTILProteomicsLFQ
- estimateNoise() : SignalToNoiseEstimatorMedianRapid
- estimateNoiseFromRandomMS1Scans() : TOPPViewBase
- estimatePeakWidth() : PeakPickerCWT
- estimatePrecursorWeight_() : CompNovoIdentification
- estimateRTRange() : OpenSwathHelper
- estimateType() : PeakTypeEstimator
- estimateUntrainedTransitions() : HiddenMarkovModel
- ETD : Precursor
- EuclideanSimilarity() : EuclideanSimilarity
- eval() : BSpline2d , CubicSpline2d , GaussFitter , GaussFitter::GaussFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , QuadraticRegression , SplineInterpolatedPeaks::Navigator , SplinePackage , TransformationModelInterpolated::Interpolator
- evaluate() : GridSearch< TupleTypes > , HiddenMarkovModel , MapAlignmentEvaluationAlgorithm , MapAlignmentEvaluationAlgorithmPrecision , MapAlignmentEvaluationAlgorithmRecall , TransformationModel , TransformationModelBSpline , TransformationModelInterpolated , TransformationModelLinear , TransformationModelLowess
- evaluateEGH_() : EGHModel
- event() : QApplicationTOPP
- evidence : Peptide
- EX_BSPLINE : TransformationModelBSpline
- EX_CONSTANT : TransformationModelBSpline
- EX_GLOBAL_LINEAR : TransformationModelBSpline
- EX_LINEAR : TransformationModelBSpline
- examine_edge() : IDBoostGraph::dfs_ccsplit_visitor
- exception : Summary
- exclude_targets_ : TargetedExperiment
- ExclusionListType_ : OfflinePrecursorIonSelection
- EXE : FileTypes
- execQuery() : MascotRemoteQuery
- executeBindStatement() : SqliteConnector
- executeStatement() : SqliteConnector
- EXECUTION_OK : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , PeptideIndexing , TOPPBase , XFDRAlgorithm
- executionFinished() : TOPPASToolVertex
- exist() : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType >
- exists() : ControlledVocabulary
- EXISTS : DataFilters
- exists() : File , IDFilter::GetMatchingItems< HitType, Entry > , MetaInfo , MultiGradient , Param
- exists_() : ParamEditorDelegate
- existsRun() : QcMLFile
- existsRunQualityParameter() : QcMLFile
- existsSet() : QcMLFile
- existsSetQualityParameter() : QcMLFile
- ExitCodes : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , PeptideIndexing , SimpleSearchEngineAlgorithm , TOPPBase , XFDRAlgorithm
- exp_ : MzDataHandler , MzMLHandler , MzXMLHandler , TraMLHandler , MSDataStoringConsumer , PeakShape
- exp_blacklist_ : FeatureFinderMultiplexAlgorithm
- exp_centroid_ : FeatureFinderMultiplexAlgorithm
- exp_centroided_ : MultiplexFiltering
- exp_centroided_mapping_ : MultiplexFiltering
- exp_centroided_white_ : MultiplexFiltering
- exp_mass_to_charge : MzTabOSMSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
- exp_masses_ : TOFCalibration
- exp_name_ : PepXMLFile
- exp_profile_ : FeatureFinderMultiplexAlgorithm
- exp_spline_profile_ : MultiplexFilteringProfile
- exp_table_ : IsotopeWavelet
- exp_table_max_index_ : IsotopeWavelet
- expandPrefix_() : LogStreamBuf
- expandToBoundingBox() : ConvexHull2D
- expected_size_ : FeatureXMLFile
- expectList_() : XMLHandler
- experiment_ : MSSim
- experiment_label_ : PepXMLFile
- experiment_type_ : ConsensusMap
- experimental : ProteinResolver::PeptideEntry
- experimental_mass_to_charge_ : IdentificationHit
- ExperimentalDesign() : ExperimentalDesign
- ExperimentalSettings() : ExperimentalSettings
- ExperimentalSettingsVisualizer() : ExperimentalSettingsVisualizer
- ExperimentSharedPtrType : LayerData , Spectrum2DWidget , SpectrumCanvas , TOPPViewBase , TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
- ExperimentType : LayerData , SpectrumCanvas , SpectrumWidget , TOPPViewBase , TOPPViewIdentificationViewBehavior , TOPPViewSpectraViewBehavior
- explained_TIC_fraction : SIPPeptide
- explainedintensity : SiriusMzTabWriter::SiriusAdapterHit
- explainedpeaks : SiriusMzTabWriter::SiriusAdapterHit
- explanations_ : MassExplainer
- exponent : FeatureDistance::DistanceParams_
- EXPONENTIAL : MassAnalyzer
- exportAsImage() : TOPPASBase
- exportAttachment() : QcMLFile
- exportConsensusMapToMzTab() : MzTab
- exportDBSearchParameters_() : IdentificationDataConverter
- exportEntries_() : SpectraIdentificationViewWidget
- exportFeatureMapToMzTab() : MzTab
- exportIdentificationsToMzTab() : MzTab
- exportIDs() : IdentificationDataConverter
- exportIDstats() : QcMLFile
- exportMSRunInformation_() : IdentificationDataConverter
- exportMzTab() : IdentificationDataConverter
- exportMzTab_() : AccurateMassSearchEngine , MetaboliteSpectralMatching
- exportParentMoleculeToMzTab_() : IdentificationDataConverter
- exportPeptideOrOligoToMzTab_() : IdentificationDataConverter
- exportQP() : QcMLFile
- exportQPs() : QcMLFile
- exportQueryMatchToMzTab_() : IdentificationDataConverter
- exportStepsAndScoresToMzTab_() : IdentificationDataConverter
- extend() : DRange< D >
- extendBox_() : IsotopeWaveletTransform< PeakType >
- extendClustersY() : GridBasedClustering< Metric >
- ExtendedIsotopeFitter1D() : ExtendedIsotopeFitter1D
- ExtendedIsotopeModel() : ExtendedIsotopeModel
- extendMassTrace_() : FeatureFinderAlgorithmPicked
- extendMassTraces_() : FeatureFinderAlgorithmPicked
- external_details : ToolDescription
- EXTERNAL_PROGRAM_ERROR : TOPPBase
- extra_rt_extract : ChromExtractParams
- extract_elution_peaks() : ProcessData
- extract_id_() : ChromatogramExtractor
- extract_MS2_elution_features() : FTPeakDetectController
- extract_scan_index() : SiriusMzTabWriter
- extract_value_bartlett() : ChromatogramExtractor
- extract_value_tophat() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
- extractAndTransformScores() : PosteriorErrorProbabilityModel
- extractAnnotationFromSiriusFile_() : SiriusFragmentAnnotation
- extractChannels() : IsobaricChannelExtractor
- extractChromatograms() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
- extractComponents_() : AbsoluteQuantitation
- extractCoverageStrings() : TOPPViewIdentificationViewBehavior
- extractDateTime_() : XQuestResultXMLHandler
- extractDouble() : StringUtils
- extractFragmentsFromSpectra() : ClusteredMS2ConsensusSpectrum
- extractIndexPairsFromBrackets_() : MzTabFile
- extractIntensities_() : ConfidenceScoring
- extractIntensityVectors() : ConsensusMapNormalizerAlgorithmQuantile
- extraction_function : ChromExtractParams
- ExtractionCoordinates : ChromatogramExtractor
- extractLabelSet() : MultiplexDeltaMassesGenerator
- extractMarkerIons() : RNPxlMarkerIonExtractor
- extractMetaboTargetedAssay() : MetaboTargetedAssay
- extractMetaboTargetedAssayFragmentAnnotation() : MetaboTargetedAssay
- extractMIDFromSiriusMS_() : SiriusFragmentAnnotation
- extractModificationListFromAASequence() : MzTab
- extractNativeIDFromSiriusMS_() : SiriusFragmentAnnotation
- extractNumberOfSubSamples_() : MzTabFile
- extractNumPeptides_() : MzTabFile
- extractNumPeptidesDistinct_() : MzTabFile
- extractNumPeptidesUnambiguous_() : MzTabFile
- extractParamsFromLine_() : MRMFeaturePickerFile
- extractPeaks() : FeatureFinderAlgorithmSHCtrl , FIAMSDataProcessor
- extractPeptideModifications_() : MzTabFile
- extractPeptideSequences() : IDFilter
- extractProteinAccession_() : MzTabFile
- extractProteinAccessionsSet() : PeptideHit
- extractRunFromLine_() : AbsoluteQuantitationStandardsFile
- extractScanNumber() : SpectrumLookup
- extractSeqAndRt_() : MapAlignmentAlgorithmTreeGuided
- extractSiriusFragmentAnnotationMapping() : SiriusFragmentAnnotation
- extractSpectra() : TargetedSpectraExtractor
- extractTrainingSet() : EmgGradientDescent , EmgGradientDescent_friend
- extractXICs() : MetaProSIPXICExtraction
- extractXICsOfIsotopeTraces() : MetaProSIPXICExtraction
- extraMSPeakInfo : MSPeak
- extraPeakInfo_ : CentroidPeak
- extrapolate_ : TransformationModelBSpline