| OpenMS 2.5.0

EDTAFile.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Chris Bielow $
32 // $Authors: Chris Bielow $
33 // --------------------------------------------------------------------------
34
35 #pragma once
36
37 #include <OpenMS/DATASTRUCTURES/String.h>
38 #include <OpenMS/CONCEPT/Exception.h>
39 #include <OpenMS/CONCEPT/LogStream.h>
40 #include <OpenMS/KERNEL/ConsensusMap.h>
41 #include <OpenMS/KERNEL/Feature.h>
42 #include <OpenMS/FORMAT/TextFile.h>
43
44 #include <fstream>
45 #include <vector>
46
47 namespace OpenMS
48 {
85 class OPENMS_DLLAPI EDTAFile
86 {
87 public:
89 EDTAFile();
91 virtual ~EDTAFile();
92
93 private:
97 double checkedToDouble_(const std::vector<String> & parts, Size index, double def = -1);
98
102 Int checkedToInt_(const std::vector<String> & parts, Size index, Int def = -1);
103
104 public:
113 void load(const String & filename, ConsensusMap & consensus_map);
114
122 void store(const String & filename, const ConsensusMap & map) const;
123
124
132 void store(const String & filename, const FeatureMap & map) const;
133 };
134 } // namespace OpenMS
135
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::EDTAFile
File adapter for Enhanced DTA files.
Definition: EDTAFile.h:85
Feature.h
Exception.h
OpenMS::FeatureMap
A container for features.
Definition: FeatureMap.h:95
ConsensusMap.h
String.h
TextFile.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
LogStream.h
int
OpenMS::ConsensusMap
A container for consensus elements.
Definition: ConsensusMap.h:79
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127