| OpenMS 2.5.0

ClusteringGrid.h
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2 // OpenMS -- Open-Source Mass Spectrometry
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30 // --------------------------------------------------------------------------
31 // $Maintainer: Lars Nilse $
32 // $Authors: Lars Nilse $
33 // --------------------------------------------------------------------------
34 #pragma once
35
36 #include <OpenMS/KERNEL/StandardTypes.h>
37 #include <OpenMS/DATASTRUCTURES/DPosition.h>
38
39 #include <OpenMS/KERNEL/StandardDeclarations.h>
40 #include <OpenMS/CONCEPT/Types.h>
41 #include <OpenMS/CONCEPT/Exception.h>
42 #include <OpenMS/CONCEPT/Macros.h>
43
44 #include <map>
45 #include <vector>
46 #include <list>
47
48 namespace OpenMS
49 {
56 class OPENMS_DLLAPI ClusteringGrid
57 {
58 public:
62 typedef std::pair<int,int> CellIndex;
63
67 typedef DPosition<2> Point;
68
76 ClusteringGrid(const std::vector<double> &grid_spacing_x, const std::vector<double> &grid_spacing_y);
77
81 std::vector<double> getGridSpacingX() const;
82
86 std::vector<double> getGridSpacingY() const;
87
94 void addCluster(const CellIndex &cell_index, const int &cluster_index);
95
103 void removeCluster(const CellIndex &cell_index, const int &cluster_index);
104
108 void removeAllClusters();
109
116 std::list<int> getClusters(const CellIndex &cell_index) const;
117
124 CellIndex getIndex(const Point &position) const;
125
135 bool isNonEmptyCell(const CellIndex &cell_index) const;
136
142 int getCellCount() const;
143
144 private:
148 const std::vector<double> grid_spacing_x_;
149 const std::vector<double> grid_spacing_y_;
150
154 std::pair <double,double> range_x_;
155 std::pair <double,double> range_y_;
156
160 std::map<CellIndex, std::list<int> > cells_;
161
162 };
163
164 }
165
OpenMS::ClusteringGrid::grid_spacing_x_
const std::vector< double > grid_spacing_x_
spacing of the grid in x and y direction
Definition: ClusteringGrid.h:148
OpenMS::ClusteringGrid::CellIndex
std::pair< int, int > CellIndex
Definition: ClusteringGrid.h:62
seqan::position
Size< TNeedle >::Type position(const PatternAuxData< TNeedle > &dh)
Definition: AhoCorasickAmbiguous.h:561
StandardDeclarations.h
Exception.h
StandardTypes.h
OpenMS::ClusteringGrid::range_y_
std::pair< double, double > range_y_
Definition: ClusteringGrid.h:155
Types.h
OpenMS::ClusteringGrid::range_x_
std::pair< double, double > range_x_
[min, max] of the grid in x and y direction
Definition: ClusteringGrid.h:154
OpenMS::ClusteringGrid
data structure to store 2D data to be clustered e.g. (m/z, retention time) coordinates from multiplex...
Definition: ClusteringGrid.h:56
OpenMS::ClusteringGrid::Point
DPosition< 2 > Point
Definition: ClusteringGrid.h:67
DPosition.h
OpenMS::ClusteringGrid::cells_
std::map< CellIndex, std::list< int > > cells_
grid cell index mapped to a list of clusters in it
Definition: ClusteringGrid.h:160
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::DPosition< 2 >
Macros.h
OpenMS::ClusteringGrid::grid_spacing_y_
const std::vector< double > grid_spacing_y_
Definition: ClusteringGrid.h:149