| OpenMS 2.5.0

SiriusAdapterAlgorithm Member List

This is the complete list of members for SiriusAdapterAlgorithm, including all inherited members.

auto_charge_ | SiriusAdapterAlgorithm | protected
callSiriusQProcess(const String &tmp_ms_file, const String &tmp_out_dir, String &executable, const String &out_csifingerid, const SiriusAdapterAlgorithm &sirius_algo) | SiriusAdapterAlgorithm | static
candidates_ | SiriusAdapterAlgorithm | protected
check_defaults_ | DefaultParamHandler | protected
checkFeatureSpectraNumber(const String &featureinfo, const FeatureMapping::FeatureToMs2Indices &feature_mapping, const MSExperiment &spectra, const SiriusAdapterAlgorithm &sirius_algo) | SiriusAdapterAlgorithm | static
compound_timeout_ | SiriusAdapterAlgorithm | protected
cores_ | SiriusAdapterAlgorithm | protected
database_ | SiriusAdapterAlgorithm | protected
DefaultParamHandler(const String &name) | DefaultParamHandler |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |
defaults_ | DefaultParamHandler | protected
defaultsToParam_() | DefaultParamHandler | protected
elements_ | SiriusAdapterAlgorithm | protected
error_name_ | DefaultParamHandler | protected
feature_only_ | SiriusAdapterAlgorithm | protected
filter_by_num_masstraces_ | SiriusAdapterAlgorithm | protected
getCandidates() | SiriusAdapterAlgorithm |
getDefaults() const | DefaultParamHandler |
getFeatureOnly() | SiriusAdapterAlgorithm |
getIsotopePatternIterations() | SiriusAdapterAlgorithm |
getName() const | DefaultParamHandler |
getNoMasstraceInfoIsotopePattern() | SiriusAdapterAlgorithm |
getParameters() const | DefaultParamHandler |
getSubsections() const | DefaultParamHandler |
getTopNHits() | SiriusAdapterAlgorithm |
ion_tree_ | SiriusAdapterAlgorithm | protected
isotope_ | SiriusAdapterAlgorithm | protected
isotope_pattern_iterations_ | SiriusAdapterAlgorithm | protected
most_intense_ms2_ | SiriusAdapterAlgorithm | protected
no_masstrace_info_isotope_pattern_ | SiriusAdapterAlgorithm | protected
no_recalibration_ | SiriusAdapterAlgorithm | protected
noise_ | SiriusAdapterAlgorithm | protected
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual
param_ | DefaultParamHandler | protected
ppm_max_ | SiriusAdapterAlgorithm | protected
precursor_mz_tolerance_ | SiriusAdapterAlgorithm | protected
precursor_mz_tolerance_unit_ | SiriusAdapterAlgorithm | protected
precursor_rt_tolerance_ | SiriusAdapterAlgorithm | protected
preprocessingSirius(const String &featureinfo, const MSExperiment &spectra, std::vector< FeatureMap > &v_fp, KDTreeFeatureMaps &fp_map_kd, const SiriusAdapterAlgorithm &sirius_algo, FeatureMapping::FeatureToMs2Indices &feature_mapping) | SiriusAdapterAlgorithm | static
profile_ | SiriusAdapterAlgorithm | protected
setName(const String &name) | DefaultParamHandler |
setParameters(const Param &param) | DefaultParamHandler |
SiriusAdapterAlgorithm() | SiriusAdapterAlgorithm |
subsections_ | DefaultParamHandler | protected
top_n_hits_ | SiriusAdapterAlgorithm | protected
tree_timeout_ | SiriusAdapterAlgorithm | protected
updateMembers_() override | SiriusAdapterAlgorithm | protected virtual
warn_empty_defaults_ | DefaultParamHandler | protected
~DefaultParamHandler() | DefaultParamHandler | virtual